Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09525

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,000,953	-		DZA65_RS09520	0.45	-0.4
2,000,953	-		DZA65_RS09520	0.45	+0.0
2,000,956	-		DZA65_RS09520	0.45	-0.7
2,001,071	+		DZA65_RS09520	0.52	-0.5
2,001,074	-		DZA65_RS09520	0.52	-1.7
2,001,255	+		DZA65_RS09520	0.64	-0.2
2,001,255	+		DZA65_RS09520	0.64	-0.3
2,001,631	+		DZA65_RS09520	0.87	+0.5
2,001,632	-		DZA65_RS09520	0.88	-0.1
2,001,813	+				+0.3
2,001,813	+				-1.1
2,001,814	-				-0.4
2,001,814	-				-1.0
2,001,830	+				+0.1
2,001,830	+				-1.7
2,001,830	+				-1.3
2,001,831	-				-1.0
2,001,831	-				+0.2
2,001,831	-				+0.3
2,001,831	-				+1.3
2,001,831	-				-1.7
2,001,831	-				+0.6
2,001,831	-				+0.3
2,001,831	-				+0.0
2,001,843	+				+0.3
2,001,885	+				+1.1
2,001,885	+				-0.8
2,001,886	-				-0.0
2,001,886	-				-0.5
2,002,056	+		DZA65_RS09525	0.22	+0.7
2,002,056	+		DZA65_RS09525	0.22	-2.2
2,002,067	+		DZA65_RS09525	0.23	+0.5
2,002,068	-		DZA65_RS09525	0.23	-0.5
2,002,068	-		DZA65_RS09525	0.23	+0.6
2,002,068	-		DZA65_RS09525	0.23	-1.3
2,002,113	+		DZA65_RS09525	0.27	-0.9
2,002,113	+		DZA65_RS09525	0.27	-1.1
2,002,113	+		DZA65_RS09525	0.27	-0.4
2,002,113	+		DZA65_RS09525	0.27	+0.3
2,002,114	-		DZA65_RS09525	0.27	+0.3
2,002,114	-		DZA65_RS09525	0.27	-1.4
2,002,114	-				+0.9
2,002,155	+		DZA65_RS09525	0.31	-1.4
2,002,155	+		DZA65_RS09525	0.31	-0.9
2,002,155	+		DZA65_RS09525	0.31	-0.2
2,002,156	-		DZA65_RS09525	0.32	-2.9
2,002,156	-		DZA65_RS09525	0.32	-1.3
2,002,157	+		DZA65_RS09525	0.32	-0.8
2,002,157	+		DZA65_RS09525	0.32	+0.3
2,002,157	+		DZA65_RS09525	0.32	-0.3
2,002,157	+		DZA65_RS09525	0.32	-0.8
2,002,158	-		DZA65_RS09525	0.32	+0.3
2,002,158	-		DZA65_RS09525	0.32	+0.5
2,002,158	-		DZA65_RS09525	0.32	-1.0
2,002,158	-				-1.3
2,002,158	-		DZA65_RS09525	0.32	+1.1
2,002,158	-		DZA65_RS09525	0.32	+0.0
2,002,158	-		DZA65_RS09525	0.32	-2.0
2,002,230	+		DZA65_RS09525	0.39	-1.1
2,002,292	-		DZA65_RS09525	0.45	-2.7
2,002,355	+		DZA65_RS09525	0.51	-2.5
2,002,358	+		DZA65_RS09525	0.51	-1.3
2,002,445	+		DZA65_RS09525	0.60	-0.3
2,002,446	-		DZA65_RS09525	0.60	-1.7
2,002,538	+		DZA65_RS09525	0.69	-0.5
2,002,538	+		DZA65_RS09525	0.69	-1.7
2,002,539	-		DZA65_RS09525	0.69	-1.5
2,002,539	-		DZA65_RS09525	0.69	-1.8
2,002,542	+		DZA65_RS09525	0.69	+0.7
2,002,542	+				+2.1
2,002,542	+		DZA65_RS09525	0.69	-2.3
2,002,542	+		DZA65_RS09525	0.69	-2.2
2,002,542	+		DZA65_RS09525	0.69	-0.5
2,002,543	-		DZA65_RS09525	0.69	-1.7
2,002,543	-		DZA65_RS09525	0.69	+0.8
2,002,543	-		DZA65_RS09525	0.69	-0.7
2,002,543	-		DZA65_RS09525	0.69	+0.3
2,002,671	-		DZA65_RS09525	0.82	-1.0
2,002,671	-		DZA65_RS09525	0.82	+0.1
2,002,691	+		DZA65_RS09525	0.84	-1.4
2,002,691	+		DZA65_RS09525	0.84	-0.7
2,002,692	-		DZA65_RS09525	0.84	+0.5
2,002,692	-		DZA65_RS09525	0.84	-1.8
2,002,692	-		DZA65_RS09525	0.84	+0.6
2,002,692	-		DZA65_RS09525	0.84	-0.2
2,002,692	-		DZA65_RS09525	0.84	+0.1
2,002,692	-		DZA65_RS09525	0.84	-1.7
2,002,692	-		DZA65_RS09525	0.84	+0.3
2,002,692	-		DZA65_RS09525	0.84	-0.3
2,002,707	-		DZA65_RS09525	0.85	+1.9
2,002,765	+				-2.4
2,002,765	+				+0.6
2,002,765	+				-2.6
2,002,765	+				-1.4
2,002,766	-				-1.1
2,002,766	-				+0.3
2,002,766	-				-0.8
2,002,766	-				-0.1
2,002,794	-				-0.8
2,002,839	+				-1.1
2,002,895	+				-0.0
2,002,896	-				-1.7
2,002,896	-				-0.3
2,002,896	-				-1.7
2,002,896	-				-0.3
2,002,897	+				-0.7
2,002,897	+				-1.7
2,002,897	+				+0.9
2,002,897	+				-2.5
2,002,897	+				+0.8
2,002,897	+				+0.3
2,002,898	-				-0.8
2,002,898	-				+0.3
2,002,898	-				+0.5
2,002,898	-				-3.3
2,002,898	-				-2.5
2,002,898	-				-0.6
2,002,948	+				+0.3
2,002,949	-				-1.1
2,003,055	-		DZA65_RS09530	0.18	-0.3
2,003,118	+		DZA65_RS09530	0.24	+0.4
2,003,118	+		DZA65_RS09530	0.24	-1.1
2,003,119	-		DZA65_RS09530	0.24	-1.6
2,003,176	+		DZA65_RS09530	0.29	+0.3
2,003,176	+		DZA65_RS09530	0.29	+0.0
2,003,177	-		DZA65_RS09530	0.29	+0.3
2,003,177	-		DZA65_RS09530	0.29	-0.5
2,003,177	-		DZA65_RS09530	0.29	-0.6
2,003,177	-		DZA65_RS09530	0.29	+1.9
2,003,177	-		DZA65_RS09530	0.29	+1.0
2,003,177	-		DZA65_RS09530	0.29	+0.3
2,003,281	+		DZA65_RS09530	0.39	-2.0
2,003,281	+		DZA65_RS09530	0.39	+0.6
2,003,329	-		DZA65_RS09530	0.43	+0.3
2,003,441	+		DZA65_RS09530	0.53	-1.7
2,003,498	+		DZA65_RS09530	0.59	-0.3
2,003,498	+		DZA65_RS09530	0.59	+0.3
2,003,509	+		DZA65_RS09530	0.60	-0.0
2,003,509	+		DZA65_RS09530	0.60	-1.7
2,003,509	+		DZA65_RS09530	0.60	+0.3
2,003,509	+		DZA65_RS09530	0.60	+0.2
2,003,510	-		DZA65_RS09530	0.60	+0.1
2,003,510	-		DZA65_RS09530	0.60	-0.7
2,003,510	-		DZA65_RS09530	0.60	+1.1
2,003,510	-		DZA65_RS09530	0.60	-0.3
2,003,555	+		DZA65_RS09530	0.64	-0.6
2,003,555	+		DZA65_RS09530	0.64	-2.7
2,003,555	+		DZA65_RS09530	0.64	-0.6
2,003,555	+		DZA65_RS09530	0.64	-0.1
2,003,556	-		DZA65_RS09530	0.64	-2.3
2,003,556	-		DZA65_RS09530	0.64	-0.1
2,003,556	-				-1.3
2,003,564	+		DZA65_RS09530	0.65	-3.3
2,003,565	-		DZA65_RS09530	0.65	-0.7
2,003,623	+		DZA65_RS09530	0.70	+0.1
2,003,623	+		DZA65_RS09530	0.70	-0.8
2,003,624	-		DZA65_RS09530	0.70	+0.5
2,003,624	-		DZA65_RS09530	0.70	-0.8
2,003,644	+		DZA65_RS09530	0.72	-2.0
2,003,644	+		DZA65_RS09530	0.72	-0.4
2,003,644	+		DZA65_RS09530	0.72	+0.7
2,003,644	+		DZA65_RS09530	0.72	-0.4
2,003,645	-		DZA65_RS09530	0.72	-2.3
2,003,664	-		DZA65_RS09530	0.74	+0.4
2,003,728	+		DZA65_RS09530	0.80	-0.0
2,003,729	-		DZA65_RS09530	0.80	-1.3
2,003,729	-		DZA65_RS09530	0.80	+0.3
2,003,729	-		DZA65_RS09530	0.80	-1.7
2,003,802	-		DZA65_RS09530	0.86	+0.7