Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09505

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,997,333	-				+0.3
1,997,336	-				-2.0
1,997,427	+				+0.1
1,997,427	+				-0.2
1,997,428	-				-1.5
1,997,454	+				-0.4
1,997,455	-				-3.2
1,997,455	-				-0.2
1,997,461	+				-0.4
1,997,461	+				-1.3
1,997,461	+				-0.0
1,997,462	-				+0.9
1,997,462	-				-2.0
1,997,469	-				-1.3
1,997,522	+				-0.3
1,997,556	-		DZA65_RS09500	0.12	-0.2
1,997,570	+		DZA65_RS09500	0.14	-0.0
1,997,668	-		DZA65_RS09500	0.28	-0.0
1,997,668	-		DZA65_RS09500	0.28	-0.0
1,997,668	-		DZA65_RS09500	0.28	+0.1
1,997,680	+		DZA65_RS09500	0.30	-1.3
1,997,680	+		DZA65_RS09500	0.30	-0.9
1,997,680	+		DZA65_RS09500	0.30	+1.6
1,997,680	+		DZA65_RS09500	0.30	+0.6
1,997,680	+		DZA65_RS09500	0.30	+0.5
1,997,680	+		DZA65_RS09500	0.30	-1.3
1,997,681	-		DZA65_RS09500	0.30	-2.3
1,997,681	-		DZA65_RS09500	0.30	+0.4
1,997,722	+		DZA65_RS09500	0.36	+1.9
1,997,722	+		DZA65_RS09500	0.36	+0.7
1,997,722	+		DZA65_RS09500	0.36	+1.3
1,997,727	+		DZA65_RS09500	0.37	-0.3
1,997,727	+		DZA65_RS09500	0.37	+0.1
1,997,727	+		DZA65_RS09500	0.37	-0.8
1,997,832	+		DZA65_RS09500	0.52	+0.5
1,997,832	+		DZA65_RS09500	0.52	-0.2
1,997,863	+		DZA65_RS09500	0.56	-0.3
1,997,863	+		DZA65_RS09500	0.56	+0.5
1,997,864	-		DZA65_RS09500	0.56	-0.1
1,997,930	+		DZA65_RS09500	0.66	+1.6
1,997,930	+		DZA65_RS09500	0.66	-3.2
1,997,930	+		DZA65_RS09500	0.66	-0.8
1,997,930	+		DZA65_RS09500	0.66	-2.9
1,997,984	-		DZA65_RS09500	0.74	+1.0
1,998,016	+		DZA65_RS09500	0.78	-0.0
1,998,166	+				-1.2
1,998,166	+				-0.1
1,998,167	-				+1.0
1,998,195	+				-0.4
1,998,195	+				+0.2
1,998,196	-				-2.3
1,998,199	+				-0.6
1,998,199	+				-0.7
1,998,200	-				-0.0
1,998,250	-				+0.1
1,998,308	-				-1.9
1,998,349	+				-1.3
1,998,350	-				+1.0
1,998,350	-				+0.1
1,998,350	-				+2.1
1,998,353	+				+0.9
1,998,353	+				+0.3
1,998,353	+				+0.3
1,998,353	+				-1.5
1,998,353	+				+1.6
1,998,353	+				+1.0
1,998,353	+				-0.4
1,998,353	+				+1.0
1,998,353	+				+1.3
1,998,353	+				-2.3
1,998,353	+				+0.3
1,998,354	-				+0.3
1,998,354	-				+2.3
1,998,354	-				-0.4
1,998,354	-				+0.7
1,998,358	-				+0.0
1,998,375	+				+0.7
1,998,375	+				-2.3
1,998,428	+		DZA65_RS09505	0.13	+1.7
1,998,428	+		DZA65_RS09505	0.13	-0.9
1,998,428	+		DZA65_RS09505	0.13	-0.0
1,998,429	-		DZA65_RS09505	0.14	-0.4
1,998,429	-		DZA65_RS09505	0.14	-0.7
1,998,499	+		DZA65_RS09505	0.19	-1.5
1,998,577	+		DZA65_RS09505	0.26	+0.5
1,998,577	+		DZA65_RS09505	0.26	-0.1
1,998,577	+		DZA65_RS09505	0.26	+0.1
1,998,578	-		DZA65_RS09505	0.26	+0.0
1,998,578	-		DZA65_RS09505	0.26	-1.4
1,998,643	+		DZA65_RS09505	0.32	-1.8
1,998,643	+		DZA65_RS09505	0.32	+0.7
1,998,920	+		DZA65_RS09505	0.55	+1.4
1,998,920	+		DZA65_RS09505	0.55	+0.3
1,998,920	+		DZA65_RS09505	0.55	-1.6
1,998,920	+		DZA65_RS09505	0.55	+0.0
1,998,920	+		DZA65_RS09505	0.55	-1.6
1,998,921	-		DZA65_RS09505	0.55	+1.7
1,998,921	-		DZA65_RS09505	0.55	+0.3
1,998,986	+		DZA65_RS09505	0.61	-0.2
1,998,986	+		DZA65_RS09505	0.61	+0.6
1,998,987	-		DZA65_RS09505	0.61	-1.5
1,998,987	-		DZA65_RS09505	0.61	-0.2
1,998,987	-		DZA65_RS09505	0.61	-1.0
1,999,028	+		DZA65_RS09505	0.64	-0.0
1,999,028	+		DZA65_RS09505	0.64	-2.2
1,999,028	+		DZA65_RS09505	0.64	+0.1
1,999,028	+		DZA65_RS09505	0.64	+0.7
1,999,028	+		DZA65_RS09505	0.64	-2.7
1,999,028	+		DZA65_RS09505	0.64	-0.2
1,999,028	+		DZA65_RS09505	0.64	+0.3
1,999,028	+		DZA65_RS09505	0.64	+0.2
1,999,028	+		DZA65_RS09505	0.64	+1.0
1,999,028	+		DZA65_RS09505	0.64	-0.2
1,999,028	+		DZA65_RS09505	0.64	-0.2
1,999,029	-		DZA65_RS09505	0.64	-1.0
1,999,029	-		DZA65_RS09505	0.64	-0.5
1,999,029	-		DZA65_RS09505	0.64	-0.6
1,999,029	-		DZA65_RS09505	0.64	-0.0
1,999,029	-		DZA65_RS09505	0.64	-1.7
1,999,168	+		DZA65_RS09505	0.76	-0.9
1,999,168	+		DZA65_RS09505	0.76	+0.3
1,999,168	+		DZA65_RS09505	0.76	+1.6
1,999,169	-		DZA65_RS09505	0.76	-0.2
1,999,169	-		DZA65_RS09505	0.76	-0.3
1,999,169	-		DZA65_RS09505	0.76	-0.7
1,999,169	-		DZA65_RS09505	0.76	-2.0
1,999,179	+		DZA65_RS09505	0.77	+3.1
1,999,180	-		DZA65_RS09505	0.77	+0.3
1,999,180	-		DZA65_RS09505	0.77	-1.7
1,999,212	+		DZA65_RS09505	0.80	+2.6
1,999,213	-		DZA65_RS09505	0.80	-0.7
1,999,279	+		DZA65_RS09505	0.85	-0.7
1,999,279	+		DZA65_RS09505	0.85	+0.6
1,999,279	+		DZA65_RS09505	0.85	-3.2
1,999,280	-		DZA65_RS09505	0.86	+0.3
1,999,280	-		DZA65_RS09505	0.86	-0.4
1,999,313	-		DZA65_RS09505	0.88	-0.4
1,999,347	+				-1.7
1,999,374	+				+0.5
1,999,426	-				-2.0
1,999,426	-				+0.8
1,999,433	+				+0.3
1,999,433	+				-0.7
1,999,434	-				+1.1
1,999,434	-				-0.5
1,999,576	-				-0.7
1,999,596	+				+0.2
1,999,596	+				+0.4
1,999,597	-				-2.7
1,999,597	-				-1.5
1,999,702	+				+0.4
1,999,711	-				-1.3
1,999,711	-				-1.3
1,999,808	+				-0.3
1,999,871	+		DZA65_RS09515	0.13	-0.2
1,999,872	-		DZA65_RS09515	0.13	-2.3
1,999,943	+		DZA65_RS09515	0.34	-0.4
1,999,943	+		DZA65_RS09515	0.34	-0.1
1,999,944	-		DZA65_RS09515	0.34	-1.5
1,999,944	-		DZA65_RS09515	0.34	-1.2
1,999,944	-		DZA65_RS09515	0.34	-1.0
1,999,951	-		DZA65_RS09515	0.36	-2.7
1,999,951	-		DZA65_RS09515	0.36	-2.5
1,999,957	+		DZA65_RS09515	0.38	-0.8
1,999,957	+				+2.3
1,999,957	+		DZA65_RS09515	0.38	-2.0
2,000,104	+		DZA65_RS09515	0.81	-1.7
2,000,105	-		DZA65_RS09515	0.81	-2.0
2,000,199	+				-0.0
2,000,257	-				-0.5
2,000,257	-				+1.1
2,000,269	+				+1.3
2,000,269	+				+0.8
2,000,269	+				+1.6
2,000,269	+				+1.0
2,000,270	-				-0.8
2,000,270	-				-0.1
2,000,270	-				-1.7
2,000,270	-				+0.5
2,000,395	+				+0.5