Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09345

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,969,729	-				+0.9
1,969,729	-				+1.0
1,969,729	-				-1.8
1,969,738	+				+0.6
1,969,738	+				+0.3
1,969,739	-				+1.7
1,969,739	-				-2.0
1,969,759	+				-0.0
1,969,769	+				-0.5
1,969,803	-				-0.1
1,969,814	+				+0.1
1,969,815	-				-0.6
1,969,848	+				-0.7
1,969,859	+				+0.5
1,969,859	+				-1.3
1,969,915	-				+1.2
1,969,937	-				+0.8
1,969,974	+				+0.3
1,969,975	-				+0.9
1,969,982	-				-0.3
1,969,985	+				+0.4
1,970,001	+				+0.1
1,970,001	+				-2.2
1,970,002	-				+0.3
1,970,024	+				-0.9
1,970,057	+				-0.3
1,970,080	+				+0.6
1,970,081	-				-1.0
1,970,100	+				+0.7
1,970,155	-				-2.4
1,970,170	-				-0.7
1,970,225	+				-0.5
1,970,251	+				-1.3
1,970,252	-				-1.3
1,970,252	-				-1.2
1,970,252	-				-1.0
1,970,266	+				+0.6
1,970,267	-				+0.3
1,970,267	-				-2.0
1,970,267	-				-0.4
1,970,270	-				-0.3
1,970,270	-				-1.5
1,970,309	+				-0.2
1,970,309	+				+0.3
1,970,309	+				-1.0
1,970,310	-				+0.1
1,970,310	-				-0.1
1,970,318	+				-0.9
1,970,319	-				+0.3
1,970,355	+				+0.9
1,970,355	+				-0.4
1,970,356	-				-0.7
1,970,361	+				+0.0
1,970,362	-				+0.7
1,970,464	+		DZA65_RS09340	0.44	-0.4
1,970,496	+		DZA65_RS09340	0.56	+0.2
1,970,496	+		DZA65_RS09340	0.56	-1.3
1,970,497	-		DZA65_RS09340	0.56	-0.2
1,970,556	+		DZA65_RS09340	0.78	+0.0
1,970,556	+		DZA65_RS09340	0.78	+1.0
1,970,557	-		DZA65_RS09340	0.79	-0.9
1,970,557	-		DZA65_RS09340	0.79	+0.2
1,970,574	+		DZA65_RS09340	0.85	+1.3
1,970,575	-		DZA65_RS09340	0.85	-1.0
1,970,604	+				-1.9
1,970,606	+				-1.6
1,970,606	+				+1.1
1,970,607	-				+0.8
1,970,702	-		DZA65_RS09345	0.33	-0.3
1,970,734	-		DZA65_RS09345	0.46	-0.9
1,970,734	-		DZA65_RS09345	0.46	-1.1
1,970,744	-		DZA65_RS09345	0.50	-1.7
1,970,810	+		DZA65_RS09345	0.77	+1.3
1,970,824	-		DZA65_RS09345	0.83	+0.5
1,970,829	+		DZA65_RS09345	0.85	-0.4
1,970,829	+		DZA65_RS09345	0.85	+0.1
1,970,829	+		DZA65_RS09345	0.85	+0.5
1,970,836	+		DZA65_RS09345	0.88	-0.5
1,970,883	-				-1.5
1,970,931	+				+1.0
1,970,942	+				-0.1
1,970,942	+				+1.2
1,970,942	+				-0.9
1,970,942	+				-0.1
1,970,942	+				+0.6
1,970,942	+				+0.3
1,970,942	+				-1.5
1,970,943	-				-1.7
1,970,943	-				+1.0
1,970,943	-				+1.3
1,970,943	-				-0.7
1,970,943	-				+0.2
1,970,982	+				-0.2
1,970,982	+				+0.2
1,970,986	-				+0.3
1,970,993	+				-3.4
1,970,993	+				+0.5
1,971,086	+				-2.2
1,971,087	-				-0.5
1,971,105	+				+0.3
1,971,187	+				-1.0
1,971,187	+				-0.0
1,971,187	+				+1.1
1,971,188	-				-0.6
1,971,188	-				-0.0
1,971,272	-		DZA65_RS09350	0.12	-0.3
1,971,272	-		DZA65_RS09350	0.12	-1.9
1,971,284	+		DZA65_RS09350	0.13	+0.6
1,971,288	+		DZA65_RS09350	0.14	+1.2
1,971,288	+		DZA65_RS09350	0.14	-0.0
1,971,289	-		DZA65_RS09350	0.14	+0.4
1,971,312	-		DZA65_RS09350	0.16	+0.2
1,971,358	+		DZA65_RS09350	0.21	+0.4
1,971,358	+		DZA65_RS09350	0.21	-0.6
1,971,358	+		DZA65_RS09350	0.21	+2.5
1,971,358	+				-0.0
1,971,359	-				-1.0
1,971,359	-		DZA65_RS09350	0.21	-0.6
1,971,359	-		DZA65_RS09350	0.21	-1.4
1,971,359	-		DZA65_RS09350	0.21	-1.0
1,971,359	-				+1.3
1,971,370	+		DZA65_RS09350	0.22	-2.7
1,971,370	+		DZA65_RS09350	0.22	-1.3
1,971,370	+		DZA65_RS09350	0.22	-2.3
1,971,370	+		DZA65_RS09350	0.22	-1.9
1,971,370	+		DZA65_RS09350	0.22	-0.3
1,971,371	-		DZA65_RS09350	0.22	-1.4
1,971,371	-		DZA65_RS09350	0.22	-0.5
1,971,371	-		DZA65_RS09350	0.22	-0.7
1,971,371	-		DZA65_RS09350	0.22	+1.2
1,971,371	-		DZA65_RS09350	0.22	-0.1
1,971,371	-		DZA65_RS09350	0.22	-1.3
1,971,371	-		DZA65_RS09350	0.22	-0.1
1,971,371	-		DZA65_RS09350	0.22	-0.9
1,971,371	-		DZA65_RS09350	0.22	+0.1
1,971,371	-		DZA65_RS09350	0.22	-1.3
1,971,371	-		DZA65_RS09350	0.22	-1.0
1,971,448	+		DZA65_RS09350	0.30	+1.3
1,971,448	+		DZA65_RS09350	0.30	-1.9
1,971,448	+		DZA65_RS09350	0.30	+0.8
1,971,448	+		DZA65_RS09350	0.30	-0.9
1,971,449	-		DZA65_RS09350	0.30	+0.5
1,971,449	-		DZA65_RS09350	0.30	-0.3
1,971,449	-		DZA65_RS09350	0.30	+0.7
1,971,449	-		DZA65_RS09350	0.30	-0.1
1,971,449	-		DZA65_RS09350	0.30	-0.9
1,971,449	-		DZA65_RS09350	0.30	+1.0
1,971,449	-		DZA65_RS09350	0.30	+0.3
1,971,482	+		DZA65_RS09350	0.34	-1.5
1,971,482	+		DZA65_RS09350	0.34	+0.7
1,971,483	-		DZA65_RS09350	0.34	-1.3
1,971,563	-		DZA65_RS09350	0.42	+1.1
1,971,612	-		DZA65_RS09350	0.47	+0.4
1,971,612	-		DZA65_RS09350	0.47	+0.0
1,971,653	+		DZA65_RS09350	0.51	+0.8
1,971,653	+		DZA65_RS09350	0.51	-0.4
1,971,653	+		DZA65_RS09350	0.51	-0.2
1,971,653	+		DZA65_RS09350	0.51	+0.3
1,971,653	+		DZA65_RS09350	0.51	+0.0
1,971,653	+		DZA65_RS09350	0.51	-0.1
1,971,653	+		DZA65_RS09350	0.51	-0.9
1,971,654	-				+2.5
1,971,654	-		DZA65_RS09350	0.51	-0.6
1,971,654	-		DZA65_RS09350	0.51	-0.1
1,971,725	+		DZA65_RS09350	0.59	-0.7
1,971,742	+		DZA65_RS09350	0.60	-0.9
1,971,749	-		DZA65_RS09350	0.61	-0.8
1,971,749	-		DZA65_RS09350	0.61	-0.1
1,971,756	-		DZA65_RS09350	0.62	-0.6
1,971,784	+		DZA65_RS09350	0.65	-1.0
1,971,805	+		DZA65_RS09350	0.67	-1.0
1,971,805	+		DZA65_RS09350	0.67	+0.3
1,971,805	+		DZA65_RS09350	0.67	+0.7
1,971,825	-		DZA65_RS09350	0.69	+0.4
1,971,825	-		DZA65_RS09350	0.69	-2.3
1,971,830	+		DZA65_RS09350	0.69	-0.2
1,971,838	+				+0.7
1,971,838	+		DZA65_RS09350	0.70	+1.0
1,971,839	-		DZA65_RS09350	0.70	+1.0
1,971,858	+		DZA65_RS09350	0.72	+1.3
1,971,858	+		DZA65_RS09350	0.72	-1.3
1,971,858	+		DZA65_RS09350	0.72	+0.3
1,971,858	+				-1.7
1,971,858	+		DZA65_RS09350	0.72	-0.9
1,971,858	+		DZA65_RS09350	0.72	-0.1
1,971,858	+		DZA65_RS09350	0.72	-0.7
1,971,859	-		DZA65_RS09350	0.72	-1.0
1,971,859	-		DZA65_RS09350	0.72	-0.7
1,971,859	-		DZA65_RS09350	0.72	-1.7
1,971,859	-		DZA65_RS09350	0.72	-0.9
1,971,859	-		DZA65_RS09350	0.72	-0.4
1,971,859	-		DZA65_RS09350	0.72	-1.9