Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09170

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,935,270	+		DZA65_RS09165	0.67	-0.0
1,935,270	+		DZA65_RS09165	0.67	+0.0
1,935,271	-		DZA65_RS09165	0.67	-1.3
1,935,271	-		DZA65_RS09165	0.67	+0.4
1,935,271	-		DZA65_RS09165	0.67	-0.9
1,935,271	-		DZA65_RS09165	0.67	+1.6
1,935,271	-		DZA65_RS09165	0.67	-0.1
1,935,271	-		DZA65_RS09165	0.67	+1.5
1,935,272	+		DZA65_RS09165	0.67	+1.3
1,935,273	-		DZA65_RS09165	0.67	+1.3
1,935,328	+		DZA65_RS09165	0.70	-1.7
1,935,328	+		DZA65_RS09165	0.70	+0.4
1,935,328	+		DZA65_RS09165	0.70	-0.1
1,935,328	+		DZA65_RS09165	0.70	-0.7
1,935,328	+		DZA65_RS09165	0.70	-0.6
1,935,328	+		DZA65_RS09165	0.70	+0.9
1,935,328	+		DZA65_RS09165	0.70	-1.0
1,935,328	+		DZA65_RS09165	0.70	+0.3
1,935,329	-		DZA65_RS09165	0.70	-0.2
1,935,329	-		DZA65_RS09165	0.70	-0.0
1,935,329	-		DZA65_RS09165	0.70	+0.7
1,935,352	-		DZA65_RS09165	0.71	-1.5
1,935,473	-		DZA65_RS09165	0.78	-0.1
1,935,481	+		DZA65_RS09165	0.78	+1.6
1,935,482	-		DZA65_RS09165	0.78	-0.5
1,935,482	-		DZA65_RS09165	0.78	+0.5
1,935,541	+				+0.3
1,935,541	+		DZA65_RS09165	0.81	+0.6
1,935,542	-		DZA65_RS09165	0.81	-1.0
1,935,586	+		DZA65_RS09165	0.84	-0.1
1,935,587	-		DZA65_RS09165	0.84	-0.0
1,935,608	+		DZA65_RS09165	0.85	-0.3
1,935,608	+		DZA65_RS09165	0.85	+0.0
1,935,608	+		DZA65_RS09165	0.85	+0.7
1,935,609	-		DZA65_RS09165	0.85	-1.3
1,935,609	-		DZA65_RS09165	0.85	+0.3
1,935,609	-		DZA65_RS09165	0.85	-0.7
1,935,609	-		DZA65_RS09165	0.85	+1.3
1,935,609	-		DZA65_RS09165	0.85	-0.1
1,935,609	-		DZA65_RS09165	0.85	-0.1
1,935,609	-		DZA65_RS09165	0.85	-0.7
1,935,661	+		DZA65_RS09165	0.88	+1.1
1,935,834	+				-0.3
1,935,834	+				-0.2
1,935,834	+				+2.9
1,935,834	+				+1.0
1,935,834	+				-0.5
1,935,834	+				-0.7
1,935,834	+				+0.8
1,935,835	-				+0.3
1,935,835	-				-0.7
1,935,835	-				-1.0
1,935,835	-				-0.4
1,935,835	-				-0.5
1,935,835	-				-0.4
1,935,857	+				+0.6
1,935,857	+				-0.3
1,935,963	+				+0.9
1,935,964	-				-0.7
1,935,977	+				+0.3
1,936,037	+				+0.1
1,936,040	-				-0.9
1,936,040	-				+0.7
1,936,144	-				-1.2
1,936,167	+				-0.1
1,936,167	+				+0.4
1,936,167	+				-0.4
1,936,167	+				-0.3
1,936,167	+				-0.1
1,936,167	+				+0.9
1,936,167	+				-0.0
1,936,167	+				-0.4
1,936,167	+				-1.1
1,936,167	+				-1.9
1,936,168	-				-1.5
1,936,168	-				+0.8
1,936,168	-				+0.3
1,936,168	-				-0.0
1,936,168	-				-0.6
1,936,168	-				+0.9
1,936,168	-				-0.3
1,936,168	-				+0.8
1,936,168	-				+0.8
1,936,168	-				+0.8
1,936,168	-				-0.2
1,936,168	-				-1.5
1,936,177	+				-0.2
1,936,183	+				+1.3
1,936,183	+				+0.8
1,936,183	+				+2.5
1,936,183	+				+0.6
1,936,183	+				-1.3
1,936,183	+				+0.9
1,936,183	+				-0.0
1,936,183	+				-2.3
1,936,184	-				-0.4
1,936,184	-				+0.1
1,936,184	-				-0.7
1,936,184	-				+0.9
1,936,339	+		DZA65_RS09170	0.13	-0.4
1,936,339	+		DZA65_RS09170	0.13	-2.3
1,936,339	+		DZA65_RS09170	0.13	+0.5
1,936,339	+		DZA65_RS09170	0.13	-0.9
1,936,339	+		DZA65_RS09170	0.13	-1.6
1,936,339	+		DZA65_RS09170	0.13	-0.8
1,936,340	-		DZA65_RS09170	0.13	-0.8
1,936,340	-				+0.7
1,936,340	-		DZA65_RS09170	0.13	+0.7
1,936,624	+		DZA65_RS09170	0.35	-0.8
1,936,624	+		DZA65_RS09170	0.35	+0.3
1,936,625	-		DZA65_RS09170	0.36	+0.4
1,936,630	+		DZA65_RS09170	0.36	-0.6
1,936,630	+		DZA65_RS09170	0.36	-2.0
1,936,685	-		DZA65_RS09170	0.40	+0.6
1,936,685	-		DZA65_RS09170	0.40	-2.0
1,936,764	+		DZA65_RS09170	0.46	-0.4
1,936,764	+		DZA65_RS09170	0.46	+0.5
1,936,764	+		DZA65_RS09170	0.46	+0.0
1,936,765	-		DZA65_RS09170	0.46	-0.6
1,936,765	-		DZA65_RS09170	0.46	-2.3
1,936,765	-		DZA65_RS09170	0.46	+0.2
1,936,769	-		DZA65_RS09170	0.47	-0.1
1,936,881	+		DZA65_RS09170	0.56	-1.7
1,936,882	-		DZA65_RS09170	0.56	+1.2
1,936,894	+		DZA65_RS09170	0.57	-0.4
1,936,894	+		DZA65_RS09170	0.57	+1.1
1,936,895	-		DZA65_RS09170	0.57	-1.3
1,936,896	+		DZA65_RS09170	0.57	-1.3
1,936,966	+		DZA65_RS09170	0.62	-0.5
1,936,966	+		DZA65_RS09170	0.62	-1.7
1,936,966	+		DZA65_RS09170	0.62	-0.7
1,936,967	-		DZA65_RS09170	0.62	+0.6
1,936,967	-		DZA65_RS09170	0.62	-0.2
1,936,967	-		DZA65_RS09170	0.62	-0.9
1,936,967	-		DZA65_RS09170	0.62	+1.0
1,936,967	-		DZA65_RS09170	0.62	+0.5
1,937,072	-		DZA65_RS09170	0.71	+1.3
1,937,136	+		DZA65_RS09170	0.76	-2.0
1,937,137	-		DZA65_RS09170	0.76	+0.9
1,937,137	-		DZA65_RS09170	0.76	-1.3
1,937,179	+		DZA65_RS09170	0.79	-2.5
1,937,180	-		DZA65_RS09170	0.79	-0.3
1,937,180	-		DZA65_RS09170	0.79	+1.1
1,937,180	-		DZA65_RS09170	0.79	+1.5
1,937,224	+		DZA65_RS09170	0.82	-0.7
1,937,224	+		DZA65_RS09170	0.82	-1.0
1,937,224	+		DZA65_RS09170	0.82	+0.4
1,937,224	+		DZA65_RS09170	0.82	-0.3
1,937,225	-		DZA65_RS09170	0.82	-1.5
1,937,225	-		DZA65_RS09170	0.82	-0.3
1,937,225	-		DZA65_RS09170	0.82	-1.0
1,937,225	-		DZA65_RS09170	0.82	-1.3
1,937,225	-		DZA65_RS09170	0.82	-0.6
1,937,225	-		DZA65_RS09170	0.82	-0.7
1,937,225	-		DZA65_RS09170	0.82	-0.2
1,937,365	+				+0.3
1,937,536	+				-0.1
1,937,536	+				-0.6
1,937,537	-				-0.0
1,937,537	-				-0.7
1,937,543	+				+1.9
1,937,544	-				-0.3
1,937,579	+				+0.4
1,937,579	+				+0.5
1,937,579	+				-0.7
1,937,579	+				+0.6
1,937,579	+				+0.1
1,937,579	+				+1.9
1,937,579	+				-0.1
1,937,580	-				-0.1
1,937,580	-				+0.5
1,937,580	-				+0.1
1,937,580	-				+0.6
1,937,580	-				-1.5
1,937,580	-				+0.5
1,937,583	-				+0.1
1,937,611	+				+0.4
1,937,611	+				-1.2
1,937,611	+				-0.3
1,937,611	+				-0.1
1,937,611	+				-2.0
1,937,611	+				-0.9
1,937,611	+				+0.2
1,937,611	+				-0.1
1,937,612	-				+0.6
1,937,612	-				+0.1
1,937,612	-				-1.0
1,937,612	-				+1.9
1,937,612	-				-1.0
1,937,612	-				-2.9
1,937,618	+				+0.3
1,937,619	-				+0.3
1,937,691	-				-0.2
1,937,691	-				+0.0
1,937,691	-				-0.2
1,937,691	-				+0.2
1,937,826	-		DZA65_RS09175	0.17	+0.0
1,937,840	+		DZA65_RS09175	0.18	+0.7
1,937,840	+		DZA65_RS09175	0.18	-1.7
1,937,840	+		DZA65_RS09175	0.18	-0.4
1,937,840	+		DZA65_RS09175	0.18	-0.1
1,937,840	+		DZA65_RS09175	0.18	-0.6
1,937,841	-		DZA65_RS09175	0.18	+0.7
1,937,841	-		DZA65_RS09175	0.18	-0.8
1,937,841	-		DZA65_RS09175	0.18	+0.1
1,937,841	-		DZA65_RS09175	0.18	+0.6
1,937,841	-		DZA65_RS09175	0.18	+0.3
1,937,841	-		DZA65_RS09175	0.18	+0.4
1,937,842	+		DZA65_RS09175	0.18	-0.1
1,937,842	+		DZA65_RS09175	0.18	-1.0
1,937,842	+		DZA65_RS09175	0.18	+0.3
1,937,842	+		DZA65_RS09175	0.18	-0.2
1,937,842	+		DZA65_RS09175	0.18	+0.5
1,937,842	+		DZA65_RS09175	0.18	-1.3
1,937,842	+		DZA65_RS09175	0.18	+1.3
1,937,842	+		DZA65_RS09175	0.18	+0.0
1,937,843	-		DZA65_RS09175	0.18	-0.3
1,937,843	-		DZA65_RS09175	0.18	+0.9
1,937,843	-		DZA65_RS09175	0.18	+0.0
1,937,843	-		DZA65_RS09175	0.18	-0.2
1,937,843	-		DZA65_RS09175	0.18	-0.2
1,937,843	-		DZA65_RS09175	0.18	-1.1
1,937,843	-		DZA65_RS09175	0.18	+1.4
1,937,843	-		DZA65_RS09175	0.18	+0.3
1,937,843	-		DZA65_RS09175	0.18	+1.4
1,937,872	-		DZA65_RS09175	0.20	-2.1
1,937,903	+		DZA65_RS09175	0.22	-0.8
1,937,903	+		DZA65_RS09175	0.22	+0.3
1,937,903	+		DZA65_RS09175	0.22	-0.0
1,937,904	-		DZA65_RS09175	0.22	+0.6
1,937,904	-		DZA65_RS09175	0.22	+0.3
1,937,904	-				+1.3
1,937,930	+		DZA65_RS09175	0.23	-0.7
1,937,931	-		DZA65_RS09175	0.23	-1.8
1,937,931	-		DZA65_RS09175	0.23	-2.3
1,937,960	-		DZA65_RS09175	0.25	-1.6
1,938,137	-		DZA65_RS09175	0.35	-1.3
1,938,137	-				+0.3
1,938,161	-		DZA65_RS09175	0.37	+1.1
1,938,161	-		DZA65_RS09175	0.37	+0.2
1,938,161	-		DZA65_RS09175	0.37	+1.1
1,938,161	-		DZA65_RS09175	0.37	-0.9
1,938,181	+		DZA65_RS09175	0.38	+0.1
1,938,182	-		DZA65_RS09175	0.38	-0.8
1,938,182	-		DZA65_RS09175	0.38	+2.7
1,938,182	-		DZA65_RS09175	0.38	-0.1
1,938,182	-		DZA65_RS09175	0.38	+0.3
1,938,253	+		DZA65_RS09175	0.42	-0.6
1,938,254	-		DZA65_RS09175	0.42	-1.3
1,938,271	+		DZA65_RS09175	0.43	-2.0
1,938,292	+		DZA65_RS09175	0.45	-1.3
1,938,293	-		DZA65_RS09175	0.45	+0.2
1,938,293	-		DZA65_RS09175	0.45	+0.3
1,938,319	+		DZA65_RS09175	0.46	+0.6
1,938,319	+		DZA65_RS09175	0.46	-0.1
1,938,326	-		DZA65_RS09175	0.47	+1.7
1,938,326	-		DZA65_RS09175	0.47	-0.8
1,938,448	+		DZA65_RS09175	0.54	+0.0