Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09155

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,929,700	-		DZA65_RS09150	0.82	-0.2
1,929,700	-		DZA65_RS09150	0.82	-0.5
1,929,700	-		DZA65_RS09150	0.82	-0.0
1,929,700	-		DZA65_RS09150	0.82	-0.2
1,929,700	-		DZA65_RS09150	0.82	+2.1
1,929,711	+		DZA65_RS09150	0.83	+0.3
1,929,711	+		DZA65_RS09150	0.83	-0.7
1,929,712	-		DZA65_RS09150	0.83	+0.1
1,929,712	-		DZA65_RS09150	0.83	-0.7
1,929,712	-		DZA65_RS09150	0.83	-0.7
1,929,738	+		DZA65_RS09150	0.84	+1.4
1,929,762	+		DZA65_RS09150	0.85	+0.4
1,929,762	+		DZA65_RS09150	0.85	-0.0
1,929,762	+		DZA65_RS09150	0.85	+0.3
1,929,762	+		DZA65_RS09150	0.85	+0.7
1,929,763	-		DZA65_RS09150	0.85	+0.0
1,929,763	-		DZA65_RS09150	0.85	-1.5
1,929,763	-		DZA65_RS09150	0.85	+0.1
1,929,763	-		DZA65_RS09150	0.85	-0.3
1,929,763	-		DZA65_RS09150	0.85	-0.9
1,929,851	+		DZA65_RS09150	0.89	+0.5
1,929,977	+				-0.1
1,929,977	+				-0.2
1,929,978	-				-0.4
1,930,017	+				+1.2
1,930,017	+				+0.7
1,930,018	-				-0.8
1,930,106	+				-0.2
1,930,106	+				+1.0
1,930,107	-				-0.2
1,930,107	-				-0.3
1,930,116	+				+0.9
1,930,117	-				+0.3
1,930,165	+				-0.1
1,930,166	-				+0.6
1,930,166	-				+0.7
1,930,169	+				-1.3
1,930,170	-				-0.3
1,930,170	-				+0.1
1,930,170	-				-0.4
1,930,181	-				-1.0
1,930,181	-				-0.5
1,930,181	-				+0.6
1,930,181	-				-1.8
1,930,195	+				-0.7
1,930,199	+				+0.3
1,930,199	+				-1.1
1,930,300	+				-1.1
1,930,311	+				-0.4
1,930,311	+				+0.1
1,930,311	+				+0.3
1,930,311	+				-0.8
1,930,311	+				-0.3
1,930,311	+				-0.3
1,930,311	+				-0.3
1,930,312	-				-0.9
1,930,312	-				+1.2
1,930,312	-				-0.5
1,930,312	-				+1.5
1,930,313	+				-0.4
1,930,313	+				+0.3
1,930,314	-				-0.7
1,930,314	-				+0.1
1,930,314	-				-0.4
1,930,314	-				+0.5
1,930,346	-				+0.2
1,930,450	+				-0.5
1,930,450	+				+1.5
1,930,467	+				-0.3
1,930,467	+				-0.4
1,930,467	+				-1.7
1,930,467	+				-1.3
1,930,467	+				-0.2
1,930,467	+				-1.2
1,930,468	-				-0.0
1,930,468	-				-1.4
1,930,468	-				+0.3
1,930,468	-				+1.7
1,930,468	-				-1.3
1,930,481	+				-1.3
1,930,481	+				+2.3
1,930,482	-				+0.9
1,930,482	-				-0.3
1,930,483	+				-0.0
1,930,484	-				-1.1
1,930,484	-				+0.6
1,930,484	-				-0.0
1,930,502	+				+0.9
1,930,569	-				-0.7
1,930,581	+				-1.1
1,930,581	+				+1.3
1,930,582	-				+0.7
1,930,582	-				+0.8
1,930,582	-				-0.1
1,930,582	-				+0.7
1,930,594	+				+0.7
1,930,595	-				+0.3
1,930,595	-				-0.7
1,930,595	-				-0.1
1,930,595	-				-1.7
1,930,601	-				+0.4
1,930,607	+				+1.5
1,930,608	-				+0.3
1,930,608	-				-0.6
1,930,608	-				+1.5
1,930,608	-				+0.3
1,930,620	+				-0.7
1,930,620	+				+0.7
1,930,621	-				-1.7
1,930,626	+				-0.0
1,930,627	-				-0.1
1,930,627	-				-0.3
1,930,719	+				+0.4
1,930,742	+				-2.5
1,930,742	+				-1.7
1,930,742	+				-0.4
1,930,743	-				-1.0
1,930,743	-				+0.6
1,930,743	-				+0.3
1,930,744	+				-0.9
1,930,744	+				+0.5
1,930,744	+				+0.7
1,930,744	+				-0.7
1,930,745	-				+0.1
1,930,745	-				-0.1
1,930,835	+				+0.9
1,930,836	-				+2.0
1,930,836	-				-0.8
1,931,009	-		DZA65_RS09155	0.15	-0.4
1,931,051	+		DZA65_RS09155	0.17	+0.6
1,931,052	-		DZA65_RS09155	0.17	-0.5
1,931,120	-		DZA65_RS09155	0.20	-0.9
1,931,297	+		DZA65_RS09155	0.28	+0.6
1,931,422	+		DZA65_RS09155	0.34	+0.3
1,931,511	+				-0.7
1,931,512	-				-0.0
1,931,628	+		DZA65_RS09155	0.44	+0.3
1,931,628	+		DZA65_RS09155	0.44	+0.5
1,931,758	+		DZA65_RS09155	0.50	-0.6
1,931,758	+		DZA65_RS09155	0.50	-0.1
1,931,759	-		DZA65_RS09155	0.50	+0.8
1,931,759	-		DZA65_RS09155	0.50	+1.3
1,931,792	+		DZA65_RS09155	0.52	+0.7
1,931,792	+		DZA65_RS09155	0.52	+1.5
1,931,879	-		DZA65_RS09155	0.56	+1.6
1,931,879	-		DZA65_RS09155	0.56	-1.4
1,931,882	+		DZA65_RS09155	0.56	+1.1
1,931,883	-		DZA65_RS09155	0.56	-1.3
1,931,883	-		DZA65_RS09155	0.56	+0.5
1,931,905	-		DZA65_RS09155	0.57	-0.4
1,931,905	-		DZA65_RS09155	0.57	+0.4
1,931,993	+		DZA65_RS09155	0.61	+0.1
1,931,993	+		DZA65_RS09155	0.61	-1.5
1,931,994	-		DZA65_RS09155	0.61	+0.2
1,931,994	-		DZA65_RS09155	0.61	+1.3
1,931,994	-		DZA65_RS09155	0.61	+0.7
1,932,148	+		DZA65_RS09155	0.69	+0.3
1,932,149	-		DZA65_RS09155	0.69	+0.3
1,932,212	-		DZA65_RS09155	0.72	-0.7
1,932,499	+		DZA65_RS09155	0.85	+0.5
1,932,500	-		DZA65_RS09155	0.85	+2.0
1,932,500	-		DZA65_RS09155	0.85	-0.2
1,932,707	+				+0.1
1,932,707	+				-0.5
1,932,707	+				+0.4
1,932,707	+				-0.0
1,932,707	+				+0.9
1,932,708	-				-1.2
1,932,708	-				-0.7
1,932,708	-				+0.5
1,932,708	-				+0.1
1,932,708	-				+0.3
1,932,803	+				-0.2
1,932,803	+				+0.6
1,932,803	+				+0.3
1,932,803	+				-0.1
1,932,803	+				+2.5
1,932,803	+				+0.3
1,932,804	-				+1.9
1,932,804	-				-0.5
1,932,804	-				-2.0
1,932,831	+				-0.3
1,932,831	+				-0.2
1,932,832	-				+1.3
1,932,844	+				+0.5
1,932,926	+				+0.3
1,932,926	+				+1.1
1,932,926	+				+0.3
1,932,926	+				-0.6
1,932,927	-				+0.6
1,932,927	-				+0.9
1,932,927	-				+0.6
1,933,027	+				-1.3
1,933,027	+				+0.3
1,933,027	+				-0.6
1,933,028	-				+0.1
1,933,028	-				-0.8
1,933,096	+				-0.1
1,933,096	+				+0.5
1,933,097	-				+1.0
1,933,097	-				+0.8
1,933,105	+				-1.2
1,933,105	+				-0.7
1,933,105	+				+0.5
1,933,105	+				+2.6
1,933,105	+				-0.1
1,933,105	+				-0.1
1,933,105	+				+0.5
1,933,105	+				+0.1
1,933,105	+				+0.0
1,933,105	+				-0.1
1,933,105	+				+0.0
1,933,105	+				+1.3
1,933,105	+				-0.6
1,933,105	+				+0.0
1,933,105	+				-0.1
1,933,106	-				-0.1
1,933,106	-				-2.7
1,933,106	-				-2.0
1,933,106	-				+0.8
1,933,106	-				+0.6
1,933,106	-				-1.0
1,933,106	-				+0.1
1,933,106	-				+0.7
1,933,107	+				+1.2
1,933,107	+				+0.4
1,933,108	-				-0.4
1,933,108	-				+1.2
1,933,115	+				+2.9
1,933,115	+				+0.2
1,933,208	-		DZA65_RS09160	0.19	-3.2
1,933,232	+		DZA65_RS09160	0.22	+0.3
1,933,232	+		DZA65_RS09160	0.22	-1.5
1,933,232	+		DZA65_RS09160	0.22	+0.3
1,933,232	+		DZA65_RS09160	0.22	-2.3
1,933,232	+		DZA65_RS09160	0.22	+0.5
1,933,232	+		DZA65_RS09160	0.22	-0.7
1,933,232	+		DZA65_RS09160	0.22	+0.3
1,933,232	+		DZA65_RS09160	0.22	-0.5
1,933,232	+		DZA65_RS09160	0.22	-1.0
1,933,232	+		DZA65_RS09160	0.22	+0.3
1,933,233	-		DZA65_RS09160	0.22	+0.4
1,933,233	-		DZA65_RS09160	0.22	-0.6
1,933,282	+		DZA65_RS09160	0.27	-1.0
1,933,282	+				-2.0
1,933,282	+		DZA65_RS09160	0.27	-0.9
1,933,282	+		DZA65_RS09160	0.27	+0.3
1,933,282	+		DZA65_RS09160	0.27	+0.7
1,933,283	-		DZA65_RS09160	0.27	+0.1
1,933,283	-		DZA65_RS09160	0.27	+0.3
1,933,283	-		DZA65_RS09160	0.27	+1.5
1,933,283	-		DZA65_RS09160	0.27	-0.3
1,933,284	+		DZA65_RS09160	0.27	-0.5
1,933,284	+		DZA65_RS09160	0.27	+0.3
1,933,284	+		DZA65_RS09160	0.27	+1.0
1,933,285	-		DZA65_RS09160	0.27	-0.1
1,933,285	-		DZA65_RS09160	0.27	+1.0
1,933,305	+		DZA65_RS09160	0.29	-1.1
1,933,306	-		DZA65_RS09160	0.29	+0.2
1,933,485	+		DZA65_RS09160	0.48	+0.6
1,933,485	+		DZA65_RS09160	0.48	+0.6
1,933,486	-		DZA65_RS09160	0.48	-1.3
1,933,566	+		DZA65_RS09160	0.56	+1.3
1,933,567	-		DZA65_RS09160	0.56	-0.1
1,933,639	+		DZA65_RS09160	0.64	-0.1
1,933,639	+		DZA65_RS09160	0.64	-2.0
1,933,640	-		DZA65_RS09160	0.64	-0.2
1,933,640	-		DZA65_RS09160	0.64	-0.7
1,933,656	+		DZA65_RS09160	0.66	+2.0
1,933,717	+		DZA65_RS09160	0.72	+0.4
1,933,717	+		DZA65_RS09160	0.72	-0.6
1,933,717	+		DZA65_RS09160	0.72	+0.3
1,933,717	+		DZA65_RS09160	0.72	-0.7
1,933,717	+		DZA65_RS09160	0.72	+0.4
1,933,718	-		DZA65_RS09160	0.72	+0.3
1,933,718	-		DZA65_RS09160	0.72	+1.3