Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09035

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,901,468	+		DZA65_RS09030	0.40	+1.4
1,901,468	+		DZA65_RS09030	0.40	+0.5
1,901,468	+		DZA65_RS09030	0.40	+1.5
1,901,478	-		DZA65_RS09030	0.40	+0.1
1,901,533	+		DZA65_RS09030	0.44	+1.0
1,901,534	-		DZA65_RS09030	0.44	-0.5
1,901,534	-		DZA65_RS09030	0.44	+0.2
1,901,534	-		DZA65_RS09030	0.44	-0.5
1,901,534	-		DZA65_RS09030	0.44	+0.5
1,901,571	+		DZA65_RS09030	0.46	+1.3
1,901,796	+		DZA65_RS09030	0.60	+0.2
1,901,796	+		DZA65_RS09030	0.60	+0.4
1,901,796	+		DZA65_RS09030	0.60	+0.0
1,901,796	+		DZA65_RS09030	0.60	+0.6
1,901,796	+		DZA65_RS09030	0.60	+0.5
1,901,796	+		DZA65_RS09030	0.60	-0.1
1,901,797	-		DZA65_RS09030	0.60	+0.9
1,901,924	+		DZA65_RS09030	0.68	+0.4
1,901,948	+		DZA65_RS09030	0.70	-2.0
1,901,948	+		DZA65_RS09030	0.70	+2.9
1,901,948	+		DZA65_RS09030	0.70	+0.4
1,901,948	+		DZA65_RS09030	0.70	+0.1
1,901,948	+		DZA65_RS09030	0.70	-2.0
1,901,948	+		DZA65_RS09030	0.70	+0.2
1,901,948	+		DZA65_RS09030	0.70	-0.0
1,901,948	+		DZA65_RS09030	0.70	+3.7
1,901,949	-		DZA65_RS09030	0.70	+0.7
1,901,949	-		DZA65_RS09030	0.70	+0.5
1,901,949	-		DZA65_RS09030	0.70	-0.7
1,901,949	-		DZA65_RS09030	0.70	-1.4
1,901,949	-		DZA65_RS09030	0.70	-1.2
1,901,949	-		DZA65_RS09030	0.70	+0.8
1,901,949	-		DZA65_RS09030	0.70	-1.7
1,901,949	-		DZA65_RS09030	0.70	-0.0
1,902,010	+		DZA65_RS09030	0.74	-0.1
1,902,011	-		DZA65_RS09030	0.74	-0.7
1,902,026	+		DZA65_RS09030	0.75	-1.9
1,902,027	-		DZA65_RS09030	0.75	+1.0
1,902,027	-		DZA65_RS09030	0.75	-0.7
1,902,027	-		DZA65_RS09030	0.75	-0.7
1,902,027	-		DZA65_RS09030	0.75	-0.3
1,902,041	-		DZA65_RS09030	0.76	-0.6
1,902,056	+		DZA65_RS09030	0.76	+0.8
1,902,056	+		DZA65_RS09030	0.76	-0.7
1,902,056	+		DZA65_RS09030	0.76	-0.9
1,902,057	-		DZA65_RS09030	0.77	-0.7
1,902,057	-		DZA65_RS09030	0.77	-0.5
1,902,057	-		DZA65_RS09030	0.77	+1.2
1,902,057	-		DZA65_RS09030	0.77	-0.5
1,902,070	+		DZA65_RS09030	0.77	+1.1
1,902,070	+		DZA65_RS09030	0.77	+0.6
1,902,071	-		DZA65_RS09030	0.77	-0.5
1,902,071	-		DZA65_RS09030	0.77	-2.3
1,902,071	-		DZA65_RS09030	0.77	+0.3
1,902,252	+		DZA65_RS09030	0.89	+0.5
1,902,252	+		DZA65_RS09030	0.89	+0.6
1,902,253	-		DZA65_RS09030	0.89	+1.0
1,902,332	+				+0.8
1,902,332	+				+0.9
1,902,332	+				+1.3
1,902,332	+				-0.1
1,902,333	-				+3.5
1,902,333	-				+0.7
1,902,333	-				+0.7
1,902,333	-				+1.2
1,902,333	-				+0.8
1,902,333	-				+0.3
1,902,333	-				-0.7
1,902,333	-				-0.3
1,902,333	-				-0.6
1,902,361	+				-1.3
1,902,398	+				+0.7
1,902,398	+				-0.7
1,902,416	-				-1.0
1,902,426	+				+0.9
1,902,426	+				-0.7
1,902,427	-				+0.2
1,902,427	-				-0.7
1,902,432	+				-0.5
1,902,432	+				-0.4
1,902,433	-				+0.2
1,902,433	-				-0.5
1,902,433	-				-0.7
1,902,445	+				+0.7
1,902,708	+		DZA65_RS09035	0.27	+0.6
1,903,096	+		DZA65_RS09035	0.63	+1.5
1,903,097	-		DZA65_RS09035	0.63	+0.0
1,903,097	-		DZA65_RS09035	0.63	+0.5
1,903,360	-		DZA65_RS09035	0.88	+0.4
1,903,379	+		DZA65_RS09035	0.90	+1.8
1,903,379	+		DZA65_RS09035	0.90	+0.6
1,903,380	-				+0.7
1,903,380	-				+0.3
1,903,380	-				+1.0
1,903,483	+				-0.5
1,903,483	+				+0.3
1,903,483	+				+0.1
1,903,484	-				+0.2
1,903,484	-				+0.8
1,903,511	+				+0.4
1,903,527	+				-1.7
1,903,537	+				+0.6
1,903,538	-				-0.5
1,903,549	+				-2.4
1,903,549	+				+1.4
1,903,549	+				-0.7
1,903,549	+				-1.5
1,903,549	+				-0.0
1,903,549	+				+0.2
1,903,549	+				-0.5
1,903,549	+				+1.4
1,903,549	+				+1.1
1,903,549	+				-3.4
1,903,550	-				+0.9
1,903,550	-				-0.3
1,903,550	-				-0.6
1,903,550	-				+0.6
1,903,550	-				-0.3
1,903,550	-				-2.2
1,903,598	-				+0.3
1,903,618	+				-0.5
1,903,619	-				-0.9
1,903,661	+				-0.3
1,903,661	+				+0.0
1,903,661	+				+0.6
1,903,661	+				+0.0
1,903,661	+				+0.3
1,903,661	+				+0.4
1,903,661	+				-0.1
1,903,661	+				-1.1
1,903,661	+				+0.3
1,903,661	+				-1.3
1,903,662	-				+0.6
1,903,662	-				-0.9
1,903,662	-				+0.9
1,903,662	-				+0.6
1,903,662	-				-0.6
1,903,662	-				-0.5
1,903,662	-				-1.1
1,903,662	-				-0.7
1,903,662	-				-1.5
1,903,663	+				-0.2
1,903,664	-				+3.5
1,903,676	+		DZA65_RS09040	0.11	-0.7
1,903,677	-		DZA65_RS09040	0.11	-0.7
1,903,677	-		DZA65_RS09040	0.11	+0.3
1,903,724	+		DZA65_RS09040	0.18	-1.8
1,903,725	-		DZA65_RS09040	0.18	-0.9
1,903,725	-		DZA65_RS09040	0.18	+0.0
1,903,755	+				-0.7
1,903,755	+		DZA65_RS09040	0.22	+1.3
1,903,755	+		DZA65_RS09040	0.22	+0.5
1,903,756	-		DZA65_RS09040	0.22	-0.3
1,903,756	-		DZA65_RS09040	0.22	-0.5
1,903,866	+		DZA65_RS09040	0.38	+0.3
1,903,877	+		DZA65_RS09040	0.39	+0.5
1,903,955	-		DZA65_RS09040	0.50	-0.2
1,903,994	+		DZA65_RS09040	0.56	-0.1
1,903,995	-		DZA65_RS09040	0.56	+0.3
1,904,117	+		DZA65_RS09040	0.73	-1.3
1,904,117	+		DZA65_RS09040	0.73	+0.1
1,904,117	+		DZA65_RS09040	0.73	-2.3
1,904,117	+		DZA65_RS09040	0.73	-0.2
1,904,117	+		DZA65_RS09040	0.73	-0.3
1,904,117	+		DZA65_RS09040	0.73	-0.9
1,904,117	+		DZA65_RS09040	0.73	-0.1
1,904,117	+		DZA65_RS09040	0.73	-0.0
1,904,117	+		DZA65_RS09040	0.73	-2.9
1,904,117	+		DZA65_RS09040	0.73	-0.1
1,904,117	+		DZA65_RS09040	0.73	-0.9
1,904,117	+		DZA65_RS09040	0.73	-0.3
1,904,118	-		DZA65_RS09040	0.73	-0.1
1,904,118	-		DZA65_RS09040	0.73	+0.6
1,904,118	-		DZA65_RS09040	0.73	-1.0
1,904,153	+		DZA65_RS09040	0.78	-0.2
1,904,153	+		DZA65_RS09040	0.78	-2.0
1,904,154	-		DZA65_RS09040	0.78	-0.5
1,904,222	+		DZA65_RS09040	0.88	+0.3
1,904,223	-		DZA65_RS09040	0.88	-0.5
1,904,249	+				-2.3
1,904,250	-				-2.5
1,904,250	-				-0.6
1,904,391	+				+0.7
1,904,391	+				-0.9
1,904,391	+				+1.0
1,904,391	+				+0.3
1,904,391	+				+1.5
1,904,392	-				+0.5