Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08760

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,852,562	-				+1.3
1,852,562	-				+1.0
1,852,583	-				+0.4
1,852,612	-				-0.7
1,852,616	-				-1.7
1,852,668	+		DZA65_RS08750	0.24	+0.5
1,852,721	+		DZA65_RS08750	0.40	+2.1
1,852,750	+		DZA65_RS08750	0.49	-0.1
1,852,750	+		DZA65_RS08750	0.49	+1.1
1,852,847	+		DZA65_RS08750	0.78	-1.0
1,852,866	+		DZA65_RS08750	0.83	-0.6
1,852,866	+		DZA65_RS08750	0.83	+0.3
1,852,867	-		DZA65_RS08750	0.84	-0.1
1,852,867	-		DZA65_RS08750	0.84	-0.5
1,852,872	-		DZA65_RS08750	0.85	-0.0
1,852,926	+				+0.9
1,852,926	+				-0.3
1,852,966	-		DZA65_RS08755	0.10	-0.5
1,852,978	+		DZA65_RS08755	0.14	-1.2
1,853,014	+		DZA65_RS08755	0.24	-0.0
1,853,015	-		DZA65_RS08755	0.25	-2.3
1,853,015	-		DZA65_RS08755	0.25	+0.2
1,853,022	+		DZA65_RS08755	0.27	+0.9
1,853,023	-		DZA65_RS08755	0.27	+0.5
1,853,023	-		DZA65_RS08755	0.27	-0.1
1,853,023	-		DZA65_RS08755	0.27	+0.9
1,853,023	-		DZA65_RS08755	0.27	-0.3
1,853,023	-		DZA65_RS08755	0.27	+0.4
1,853,023	-		DZA65_RS08755	0.27	-1.3
1,853,024	+		DZA65_RS08755	0.27	+0.2
1,853,025	-		DZA65_RS08755	0.28	-1.3
1,853,025	-		DZA65_RS08755	0.28	+0.8
1,853,025	-		DZA65_RS08755	0.28	-0.7
1,853,025	-		DZA65_RS08755	0.28	+0.3
1,853,037	+		DZA65_RS08755	0.31	-0.8
1,853,120	-		DZA65_RS08755	0.56	-0.7
1,853,142	+		DZA65_RS08755	0.62	+0.7
1,853,142	+		DZA65_RS08755	0.62	+1.0
1,853,147	-		DZA65_RS08755	0.64	-2.7
1,853,215	+		DZA65_RS08755	0.84	+0.6
1,853,218	+		DZA65_RS08755	0.85	-0.1
1,853,218	+		DZA65_RS08755	0.85	-0.5
1,853,218	+		DZA65_RS08755	0.85	-0.7
1,853,219	-		DZA65_RS08755	0.85	-0.9
1,853,232	-		DZA65_RS08755	0.89	+0.4
1,853,285	+				-2.7
1,853,288	+				-2.0
1,853,289	-				-1.7
1,853,292	+				+2.3
1,853,292	+				-0.2
1,853,293	-				+0.4
1,853,293	-				-0.7
1,853,293	-				-1.3
1,853,299	+				-0.4
1,853,299	+				-0.3
1,853,299	+				-1.2
1,853,300	-				+0.3
1,853,301	+				+0.2
1,853,301	+				+0.4
1,853,301	+				+0.3
1,853,302	-				+1.4
1,853,316	+				-0.2
1,853,326	+				+0.4
1,853,326	+				-1.2
1,853,326	+				+1.0
1,853,326	+				+0.1
1,853,326	+				+0.3
1,853,326	+				+1.6
1,853,326	+				-0.2
1,853,327	-				-1.1
1,853,364	+				-0.5
1,853,367	+				-0.5
1,853,422	+				-0.1
1,853,423	-				+1.9
1,853,452	+				-0.9
1,853,453	-				+1.4
1,853,511	+				-0.0
1,853,512	-				-1.0
1,853,537	+				-1.3
1,853,538	-				+1.1
1,853,565	+				+0.7
1,853,565	+				+0.3
1,853,618	+		DZA65_RS08760	0.10	-0.7
1,853,618	+		DZA65_RS08760	0.10	+1.9
1,853,618	+		DZA65_RS08760	0.10	+0.1
1,853,618	+		DZA65_RS08760	0.10	-0.3
1,853,619	-		DZA65_RS08760	0.10	-0.5
1,853,619	-		DZA65_RS08760	0.10	-1.7
1,853,619	-		DZA65_RS08760	0.10	-0.0
1,853,619	-		DZA65_RS08760	0.10	-0.5
1,853,619	-		DZA65_RS08760	0.10	-0.1
1,853,619	-		DZA65_RS08760	0.10	-1.0
1,853,654	-		DZA65_RS08760	0.14	+0.9
1,853,654	-		DZA65_RS08760	0.14	-0.9
1,853,693	+		DZA65_RS08760	0.19	+0.9
1,853,693	+		DZA65_RS08760	0.19	+1.0
1,853,693	+		DZA65_RS08760	0.19	+0.3
1,853,693	+		DZA65_RS08760	0.19	+0.3
1,853,693	+		DZA65_RS08760	0.19	-0.9
1,853,693	+		DZA65_RS08760	0.19	-2.0
1,853,693	+		DZA65_RS08760	0.19	+0.6
1,853,693	+		DZA65_RS08760	0.19	+0.5
1,853,693	+				-0.7
1,853,694	-		DZA65_RS08760	0.19	-0.9
1,853,694	-		DZA65_RS08760	0.19	-0.3
1,853,714	+		DZA65_RS08760	0.21	-2.3
1,853,714	+		DZA65_RS08760	0.21	+0.9
1,853,778	+		DZA65_RS08760	0.29	+0.5
1,853,778	+				+1.0
1,853,779	-		DZA65_RS08760	0.29	-0.5
1,853,814	+		DZA65_RS08760	0.33	-0.0
1,853,814	+		DZA65_RS08760	0.33	-0.5
1,853,814	+		DZA65_RS08760	0.33	-1.7
1,853,815	-		DZA65_RS08760	0.33	-1.7
1,853,825	-		DZA65_RS08760	0.34	-1.0
1,853,825	-		DZA65_RS08760	0.34	-2.0
1,853,825	-		DZA65_RS08760	0.34	-1.3
1,853,933	+		DZA65_RS08760	0.47	-0.4
1,853,933	+		DZA65_RS08760	0.47	-1.0
1,853,933	+		DZA65_RS08760	0.47	-1.2
1,853,933	+		DZA65_RS08760	0.47	+0.5
1,853,933	+		DZA65_RS08760	0.47	-0.2
1,853,933	+		DZA65_RS08760	0.47	-0.6
1,853,933	+		DZA65_RS08760	0.47	+0.3
1,853,933	+		DZA65_RS08760	0.47	-2.7
1,853,962	-		DZA65_RS08760	0.50	-0.7
1,853,962	-		DZA65_RS08760	0.50	-1.6
1,853,962	-		DZA65_RS08760	0.50	+0.7
1,854,065	-		DZA65_RS08760	0.62	-1.4
1,854,261	+		DZA65_RS08760	0.85	+0.4
1,854,262	-		DZA65_RS08760	0.85	+0.3
1,854,262	-		DZA65_RS08760	0.85	+0.1
1,854,262	-		DZA65_RS08760	0.85	+0.7
1,854,262	-		DZA65_RS08760	0.85	-0.1
1,854,262	-		DZA65_RS08760	0.85	+1.3
1,854,301	-				+1.3
1,854,301	-				+1.1
1,854,316	-				-0.2
1,854,316	-				+0.6
1,854,316	-				+0.3
1,854,316	-				-0.2
1,854,318	-				-1.3
1,854,401	+				+0.0
1,854,402	-				-0.3
1,854,423	+				-0.1
1,854,423	+				+0.7
1,854,425	+				-0.3
1,854,426	-				-2.3
1,854,426	-				-0.5
1,854,445	+				-0.8
1,854,445	+				-0.3
1,854,446	-				-1.1
1,854,462	+				-0.4
1,854,500	+				-0.5
1,854,500	+				-0.6
1,854,500	+				-0.3
1,854,500	+				-0.1
1,854,500	+				-1.7
1,854,501	-				-1.0
1,854,501	-				-1.6
1,854,501	-				-0.2
1,854,501	-				+0.7
1,854,501	-				-0.4
1,854,501	-				-1.2
1,854,501	-				+0.5
1,854,501	-				+0.5
1,854,523	-				-0.2
1,854,523	-				-0.0
1,854,526	+				+0.7
1,854,527	-				+0.0
1,854,554	-				-0.7
1,854,554	-				-0.9
1,854,554	-				-2.0
1,854,559	+				+0.9
1,854,560	-				-0.6
1,854,560	-				-1.7
1,854,560	-				-0.1
1,854,560	-				-2.1
1,854,560	-				+0.3
1,854,560	-				-0.7
1,854,561	+				-2.0
1,854,561	+				+0.5
1,854,561	+				-0.3
1,854,561	+				-0.4
1,854,561	+				-0.9
1,854,562	-				-1.2
1,854,562	-				-0.5
1,854,562	-				+0.6
1,854,562	-				-1.7
1,854,562	-				-0.5
1,854,601	-		DZA65_RS08765	0.14	-1.2
1,854,601	-		DZA65_RS08765	0.14	+0.1
1,854,624	-		DZA65_RS08765	0.17	-0.7
1,854,648	+		DZA65_RS08765	0.19	-0.3
1,854,649	-		DZA65_RS08765	0.20	+1.0
1,854,671	+		DZA65_RS08765	0.22	-1.7
1,854,687	+		DZA65_RS08765	0.24	-1.0
1,854,724	-		DZA65_RS08765	0.28	+0.7
1,854,741	+		DZA65_RS08765	0.30	+1.3
1,854,775	+		DZA65_RS08765	0.34	-0.5
1,854,775	+		DZA65_RS08765	0.34	-0.3
1,854,775	+		DZA65_RS08765	0.34	+0.5
1,854,776	-		DZA65_RS08765	0.34	+0.7
1,854,776	-		DZA65_RS08765	0.34	-0.0
1,854,810	+		DZA65_RS08765	0.38	-0.2
1,854,875	+		DZA65_RS08765	0.45	-0.2
1,854,875	+		DZA65_RS08765	0.45	-0.9
1,854,875	+		DZA65_RS08765	0.45	-0.4
1,854,875	+		DZA65_RS08765	0.45	+0.8
1,854,876	-		DZA65_RS08765	0.45	-0.0
1,854,876	-		DZA65_RS08765	0.45	-2.3
1,854,876	-		DZA65_RS08765	0.45	-0.5
1,854,876	-		DZA65_RS08765	0.45	-1.4
1,854,876	-		DZA65_RS08765	0.45	-0.3
1,854,876	-		DZA65_RS08765	0.45	-1.7
1,854,876	-		DZA65_RS08765	0.45	-0.3
1,854,878	-		DZA65_RS08765	0.46	-0.4
1,854,916	+		DZA65_RS08765	0.50	+0.3
1,854,917	-		DZA65_RS08765	0.50	-0.4
1,854,968	+		DZA65_RS08765	0.56	-1.5
1,854,968	+		DZA65_RS08765	0.56	-0.7
1,854,981	+		DZA65_RS08765	0.57	+1.0
1,855,000	+		DZA65_RS08765	0.60	-1.5
1,855,000	+		DZA65_RS08765	0.60	-2.0
1,855,000	+		DZA65_RS08765	0.60	-0.7
1,855,000	+		DZA65_RS08765	0.60	-0.7
1,855,000	+		DZA65_RS08765	0.60	-0.9
1,855,000	+		DZA65_RS08765	0.60	-0.3
1,855,000	+		DZA65_RS08765	0.60	-1.7
1,855,001	-		DZA65_RS08765	0.60	+0.4
1,855,001	-		DZA65_RS08765	0.60	+0.5
1,855,001	-		DZA65_RS08765	0.60	-1.5
1,855,001	-		DZA65_RS08765	0.60	-0.4
1,855,001	-		DZA65_RS08765	0.60	-2.3
1,855,001	-		DZA65_RS08765	0.60	+0.2
1,855,001	-		DZA65_RS08765	0.60	+0.3
1,855,001	-		DZA65_RS08765	0.60	-1.9
1,855,015	+		DZA65_RS08765	0.61	-0.0
1,855,015	+		DZA65_RS08765	0.61	-0.3
1,855,016	-		DZA65_RS08765	0.61	-1.7
1,855,016	-		DZA65_RS08765	0.61	-1.0
1,855,017	+		DZA65_RS08765	0.62	+1.1
1,855,017	+				-1.3
1,855,017	+		DZA65_RS08765	0.62	+0.6
1,855,057	+		DZA65_RS08765	0.66	-1.4
1,855,057	+		DZA65_RS08765	0.66	+1.0
1,855,057	+		DZA65_RS08765	0.66	-0.5
1,855,057	+		DZA65_RS08765	0.66	-0.7
1,855,057	+		DZA65_RS08765	0.66	-1.5
1,855,057	+		DZA65_RS08765	0.66	-0.8
1,855,057	+		DZA65_RS08765	0.66	-0.7
1,855,057	+		DZA65_RS08765	0.66	+0.2
1,855,057	+		DZA65_RS08765	0.66	-0.7
1,855,057	+		DZA65_RS08765	0.66	+0.3
1,855,057	+		DZA65_RS08765	0.66	-0.6
1,855,058	-		DZA65_RS08765	0.66	-1.7
1,855,058	-		DZA65_RS08765	0.66	-0.7
1,855,059	+		DZA65_RS08765	0.66	+0.6
1,855,060	-				-0.7
1,855,085	+		DZA65_RS08765	0.69	-1.0
1,855,136	+		DZA65_RS08765	0.75	+0.9
1,855,137	-		DZA65_RS08765	0.75	-0.4
1,855,149	+		DZA65_RS08765	0.77	-0.6
1,855,150	-		DZA65_RS08765	0.77	-1.8
1,855,164	-		DZA65_RS08765	0.78	-2.7
1,855,164	-		DZA65_RS08765	0.78	-0.7
1,855,164	-		DZA65_RS08765	0.78	+0.9
1,855,164	-		DZA65_RS08765	0.78	+0.4
1,855,220	+		DZA65_RS08765	0.85	+1.0
1,855,224	+		DZA65_RS08765	0.85	+1.0
1,855,224	+		DZA65_RS08765	0.85	-0.7
1,855,224	+		DZA65_RS08765	0.85	-0.5
1,855,225	-		DZA65_RS08765	0.85	+0.0
1,855,236	+		DZA65_RS08765	0.87	+0.3
1,855,272	+				-0.5
1,855,272	+				+1.1
1,855,273	-				+0.3
1,855,273	-				-1.6
1,855,273	-				-0.5
1,855,278	+				-0.1
1,855,279	-				+1.6
1,855,279	-				-3.4
1,855,279	-				-0.2
1,855,292	+				-0.6
1,855,293	-				+0.3
1,855,307	-				-1.1
1,855,312	-				-0.3
1,855,312	-				-0.8
1,855,356	+				+0.8