Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08740

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,850,060	+		DZA65_RS08735	0.19	+1.3
1,850,060	+		DZA65_RS08735	0.19	+0.1
1,850,060	+		DZA65_RS08735	0.19	+0.1
1,850,060	+		DZA65_RS08735	0.19	+1.0
1,850,061	-		DZA65_RS08735	0.19	-0.5
1,850,061	-		DZA65_RS08735	0.19	+0.7
1,850,061	-		DZA65_RS08735	0.19	+0.3
1,850,061	-		DZA65_RS08735	0.19	+0.3
1,850,063	-		DZA65_RS08735	0.20	-2.3
1,850,131	-		DZA65_RS08735	0.27	-0.0
1,850,137	-		DZA65_RS08735	0.28	-1.2
1,850,137	-		DZA65_RS08735	0.28	-0.5
1,850,137	-		DZA65_RS08735	0.28	-1.3
1,850,168	-		DZA65_RS08735	0.31	+0.2
1,850,223	+		DZA65_RS08735	0.37	+0.3
1,850,223	+		DZA65_RS08735	0.37	-1.0
1,850,223	+		DZA65_RS08735	0.37	-0.1
1,850,320	+		DZA65_RS08735	0.48	-2.3
1,850,320	+		DZA65_RS08735	0.48	+0.0
1,850,320	+		DZA65_RS08735	0.48	-0.4
1,850,320	+		DZA65_RS08735	0.48	+0.3
1,850,320	+		DZA65_RS08735	0.48	+1.0
1,850,320	+		DZA65_RS08735	0.48	-1.3
1,850,320	+		DZA65_RS08735	0.48	+0.0
1,850,320	+		DZA65_RS08735	0.48	+1.3
1,850,320	+		DZA65_RS08735	0.48	+0.9
1,850,320	+		DZA65_RS08735	0.48	+0.1
1,850,321	-		DZA65_RS08735	0.48	+1.0
1,850,321	-		DZA65_RS08735	0.48	+0.6
1,850,321	-		DZA65_RS08735	0.48	-0.1
1,850,321	-		DZA65_RS08735	0.48	+1.9
1,850,321	-		DZA65_RS08735	0.48	-1.9
1,850,321	-		DZA65_RS08735	0.48	-0.1
1,850,348	-		DZA65_RS08735	0.51	+0.3
1,850,359	+		DZA65_RS08735	0.53	+0.3
1,850,389	-		DZA65_RS08735	0.56	-0.6
1,850,417	+		DZA65_RS08735	0.59	-1.6
1,850,417	+		DZA65_RS08735	0.59	-1.0
1,850,417	+		DZA65_RS08735	0.59	-1.1
1,850,418	-		DZA65_RS08735	0.59	-1.0
1,850,420	-		DZA65_RS08735	0.59	+0.1
1,850,420	-		DZA65_RS08735	0.59	-0.7
1,850,437	+		DZA65_RS08735	0.61	+1.0
1,850,438	-		DZA65_RS08735	0.61	+0.1
1,850,441	+		DZA65_RS08735	0.62	-0.9
1,850,441	+		DZA65_RS08735	0.62	-1.5
1,850,442	-		DZA65_RS08735	0.62	-0.6
1,850,458	+		DZA65_RS08735	0.64	-1.1
1,850,502	-		DZA65_RS08735	0.68	-0.3
1,850,506	+		DZA65_RS08735	0.69	-0.4
1,850,506	+		DZA65_RS08735	0.69	+0.0
1,850,507	-		DZA65_RS08735	0.69	-0.3
1,850,507	-		DZA65_RS08735	0.69	-0.2
1,850,507	-		DZA65_RS08735	0.69	+0.0
1,850,507	-		DZA65_RS08735	0.69	-0.3
1,850,525	+		DZA65_RS08735	0.71	+0.5
1,850,525	+		DZA65_RS08735	0.71	+0.0
1,850,526	-		DZA65_RS08735	0.71	+0.3
1,850,530	+		DZA65_RS08735	0.72	-0.4
1,850,545	+		DZA65_RS08735	0.73	+0.4
1,850,583	-		DZA65_RS08735	0.77	-0.3
1,850,593	+		DZA65_RS08735	0.79	-0.6
1,850,594	-		DZA65_RS08735	0.79	+0.5
1,850,618	+		DZA65_RS08735	0.81	-0.2
1,850,619	-		DZA65_RS08735	0.81	-0.7
1,850,650	+		DZA65_RS08735	0.85	-0.4
1,850,650	+		DZA65_RS08735	0.85	-1.0
1,850,651	-		DZA65_RS08735	0.85	+0.9
1,850,651	-		DZA65_RS08735	0.85	+0.3
1,850,669	+				+0.3
1,850,669	+		DZA65_RS08735	0.87	+0.6
1,850,670	-		DZA65_RS08735	0.87	+0.4
1,850,670	-		DZA65_RS08735	0.87	+0.9
1,850,733	+				-1.0
1,850,733	+				+0.4
1,850,733	+				-0.7
1,850,733	+				-0.2
1,850,734	-				-0.0
1,850,737	+				+0.4
1,850,762	+				-2.5
1,850,762	+				+0.7
1,850,762	+				-0.0
1,850,762	+				-0.7
1,850,762	+				+0.5
1,850,762	+				-1.0
1,850,762	+				-1.3
1,850,762	+				-0.3
1,850,762	+				-1.0
1,850,762	+				-0.0
1,850,762	+				-0.5
1,850,762	+				-0.0
1,850,763	-				-0.3
1,850,763	-				-1.0
1,850,763	-				-0.1
1,850,763	-				-0.2
1,850,763	-				+1.3
1,850,763	-				-2.5
1,850,763	-				-1.7
1,850,763	-				+0.7
1,850,763	-				-1.4
1,850,763	-				-1.0
1,850,764	+				+3.1
1,850,831	+				-1.3
1,850,832	-				+0.4
1,850,832	-				-0.9
1,850,850	+				+0.1
1,850,850	+				-0.7
1,850,850	+				+0.6
1,850,850	+				-1.1
1,850,860	+				+0.3
1,850,947	+				-0.7
1,850,947	+				+1.0
1,850,948	-				-2.5
1,850,948	-				-0.5
1,850,948	-				-0.0
1,850,948	-				+1.0
1,850,949	+				+0.4
1,850,949	+				+0.3
1,850,950	-				-0.6
1,850,980	+				-0.5
1,850,980	+				-0.9
1,850,981	-				+0.3
1,850,981	-				-0.6
1,850,981	-				-2.0
1,850,981	-				-0.4
1,850,981	-				+2.3
1,850,981	-				-1.1
1,850,990	-				-1.1
1,850,990	-				+0.6
1,850,998	-				-0.1
1,851,053	+		DZA65_RS08740	0.13	-0.4
1,851,053	+		DZA65_RS08740	0.13	+0.4
1,851,053	+		DZA65_RS08740	0.13	-0.6
1,851,053	+		DZA65_RS08740	0.13	+0.5
1,851,054	-		DZA65_RS08740	0.13	+0.9
1,851,054	-		DZA65_RS08740	0.13	-1.1
1,851,054	-		DZA65_RS08740	0.13	-0.5
1,851,054	-		DZA65_RS08740	0.13	+0.3
1,851,054	-		DZA65_RS08740	0.13	+0.3
1,851,218	+		DZA65_RS08740	0.47	-2.0
1,851,218	+		DZA65_RS08740	0.47	+1.9
1,851,218	+		DZA65_RS08740	0.47	-0.3
1,851,218	+		DZA65_RS08740	0.47	-0.3
1,851,218	+		DZA65_RS08740	0.47	-1.3
1,851,218	+		DZA65_RS08740	0.47	-0.5
1,851,218	+		DZA65_RS08740	0.47	-0.2
1,851,219	-		DZA65_RS08740	0.47	-0.4
1,851,219	-		DZA65_RS08740	0.47	-1.5
1,851,219	-		DZA65_RS08740	0.47	-1.1
1,851,219	-		DZA65_RS08740	0.47	+0.2
1,851,219	-		DZA65_RS08740	0.47	-0.4
1,851,223	+		DZA65_RS08740	0.48	-2.2
1,851,223	+		DZA65_RS08740	0.48	-0.1
1,851,224	-		DZA65_RS08740	0.48	+0.3
1,851,224	-		DZA65_RS08740	0.48	-1.9
1,851,224	-		DZA65_RS08740	0.48	+0.3
1,851,329	+		DZA65_RS08740	0.70	-2.3
1,851,329	+		DZA65_RS08740	0.70	+0.4
1,851,329	+		DZA65_RS08740	0.70	-0.6
1,851,329	+		DZA65_RS08740	0.70	+1.3
1,851,329	+		DZA65_RS08740	0.70	-0.3
1,851,329	+		DZA65_RS08740	0.70	+1.0
1,851,329	+		DZA65_RS08740	0.70	-0.4
1,851,329	+		DZA65_RS08740	0.70	+0.7
1,851,330	-		DZA65_RS08740	0.70	-0.5
1,851,330	-				-0.1
1,851,331	+		DZA65_RS08740	0.70	-2.7
1,851,331	+		DZA65_RS08740	0.70	-0.5
1,851,331	+		DZA65_RS08740	0.70	+0.1
1,851,332	-		DZA65_RS08740	0.70	-1.8
1,851,332	-				-2.3
1,851,332	-		DZA65_RS08740	0.70	+0.4
1,851,379	-		DZA65_RS08740	0.80	+0.1
1,851,379	-		DZA65_RS08740	0.80	-0.6
1,851,439	+				+0.4
1,851,444	+				-0.0
1,851,445	-				+0.1
1,851,445	-				-0.7
1,851,448	-				+0.3
1,851,506	+				+0.3
1,851,507	-				-0.7
1,851,586	-				+0.6
1,851,590	-				-0.4
1,851,618	+				-0.3
1,851,644	+				-0.6
1,851,680	-		DZA65_RS08745	0.11	-0.1
1,851,681	+		DZA65_RS08745	0.11	+0.0
1,851,681	+		DZA65_RS08745	0.11	-0.8
1,851,682	-		DZA65_RS08745	0.11	-1.3
1,851,683	+		DZA65_RS08745	0.11	-1.0
1,851,683	+		DZA65_RS08745	0.11	-0.5
1,851,683	+		DZA65_RS08745	0.11	-0.2
1,851,683	+		DZA65_RS08745	0.11	+0.8
1,851,684	-		DZA65_RS08745	0.11	-0.5
1,851,732	-		DZA65_RS08745	0.19	+0.4
1,851,732	-		DZA65_RS08745	0.19	-1.3
1,851,761	-		DZA65_RS08745	0.24	-1.2
1,851,779	-		DZA65_RS08745	0.27	+0.5
1,851,854	-		DZA65_RS08745	0.40	-0.5
1,851,854	-		DZA65_RS08745	0.40	+1.1
1,852,010	+		DZA65_RS08745	0.66	-0.2
1,852,011	-		DZA65_RS08745	0.67	+0.8
1,852,011	-		DZA65_RS08745	0.67	-1.7
1,852,034	+		DZA65_RS08745	0.71	+0.3
1,852,039	+		DZA65_RS08745	0.71	+0.0
1,852,044	+		DZA65_RS08745	0.72	-1.2
1,852,097	-		DZA65_RS08745	0.81	-0.2
1,852,136	-		DZA65_RS08745	0.88	-0.4
1,852,225	-				+0.3
1,852,235	-				-0.4
1,852,253	+				+0.3
1,852,302	+				+0.9
1,852,435	+				-0.7
1,852,435	+				+0.2
1,852,435	+				+2.4
1,852,435	+				-1.0
1,852,435	+				-0.5
1,852,436	-				+1.3
1,852,436	-				-0.5
1,852,436	-				+1.1
1,852,436	-				-0.3
1,852,437	+				-1.5
1,852,437	+				-1.1
1,852,437	+				+0.5
1,852,437	+				-2.3
1,852,437	+				-0.0
1,852,437	+				-2.0
1,852,437	+				-3.0
1,852,437	+				+0.6
1,852,437	+				+1.0
1,852,437	+				-0.1
1,852,437	+				-0.5
1,852,437	+				+0.9
1,852,437	+				+0.2
1,852,438	-				-1.0
1,852,438	-				-1.3
1,852,438	-				-1.5
1,852,438	-				-0.1
1,852,438	-				-0.7
1,852,438	-				-0.3
1,852,438	-				+0.3
1,852,438	-				-2.5
1,852,438	-				+0.0
1,852,438	-				-0.8
1,852,438	-				-0.7
1,852,438	-				+1.1
1,852,438	-				+0.3
1,852,472	+				+0.1