Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08375

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,765,111	-		DZA65_RS08370	0.11	+1.1
1,765,174	+		DZA65_RS08370	0.18	+0.2
1,765,280	-		DZA65_RS08370	0.30	-1.5
1,765,280	-		DZA65_RS08370	0.30	+1.5
1,765,531	+		DZA65_RS08370	0.58	+0.6
1,765,531	+		DZA65_RS08370	0.58	+0.3
1,765,532	-		DZA65_RS08370	0.58	+0.3
1,765,532	-		DZA65_RS08370	0.58	-1.4
1,765,686	+		DZA65_RS08370	0.75	+1.3
1,765,687	-		DZA65_RS08370	0.75	+1.3
1,765,714	+		DZA65_RS08370	0.78	+0.4
1,765,714	+		DZA65_RS08370	0.78	-0.7
1,765,715	-		DZA65_RS08370	0.78	+0.1
1,765,715	-		DZA65_RS08370	0.78	+0.0
1,765,715	-		DZA65_RS08370	0.78	+0.3
1,765,715	-		DZA65_RS08370	0.78	+0.8
1,765,771	+		DZA65_RS08370	0.85	-0.6
1,765,823	-				+0.6
1,765,871	-				+0.6
1,765,871	-				+0.1
1,765,892	+				+0.9
1,765,892	+				+1.5
1,765,892	+				-0.6
1,765,892	+				+1.4
1,765,892	+				+0.3
1,765,892	+				+1.1
1,765,892	+				+0.8
1,765,892	+				+0.5
1,765,893	-				+0.7
1,765,893	-				+1.5
1,765,909	+				+1.7
1,765,909	+				+1.0
1,765,909	+				+1.4
1,765,909	+				+0.9
1,765,909	+				+0.3
1,765,910	-				-2.7
1,765,926	-				+0.6
1,765,926	-				-0.4
1,765,932	+				+0.7
1,765,967	+				+0.8
1,765,983	+				+1.5
1,765,983	+				+0.7
1,765,983	+				+1.7
1,765,983	+				+0.7
1,765,983	+				+0.3
1,765,983	+				-1.0
1,765,983	+				-0.5
1,765,983	+				+1.6
1,765,984	-				+0.1
1,765,984	-				+0.7
1,765,984	-				-0.7
1,765,984	-				+1.0
1,765,984	-				+0.1
1,765,984	-				+0.6
1,765,984	-				+0.3
1,765,984	-				-0.6
1,765,984	-				+0.3
1,766,002	+				+1.4
1,766,003	-				+0.5
1,766,003	-				+0.5
1,766,014	+				+1.0
1,766,015	-				-1.3
1,766,034	+				+1.1
1,766,034	+				+0.9
1,766,034	+				+0.9
1,766,034	+				+1.9
1,766,062	+				+1.4
1,766,062	+				+0.5
1,766,063	-				-0.4
1,766,063	-				-0.7
1,766,070	+				+0.4
1,766,071	-				+0.1
1,766,186	+				+1.0
1,766,186	+				+1.3
1,766,186	+				+2.3
1,766,186	+				+0.2
1,766,186	+				+0.0
1,766,186	+				-1.3
1,766,187	-				-0.7
1,766,187	-				-1.0
1,766,187	-				+0.1
1,766,187	-				+0.5
1,766,263	+		DZA65_RS08375	0.12	+0.4
1,766,263	+		DZA65_RS08375	0.12	+0.4
1,766,263	+		DZA65_RS08375	0.12	+0.0
1,766,264	-		DZA65_RS08375	0.12	-1.5
1,766,264	-		DZA65_RS08375	0.12	-0.9
1,766,264	-		DZA65_RS08375	0.12	+0.2
1,766,264	-		DZA65_RS08375	0.12	-0.3
1,766,317	+		DZA65_RS08375	0.16	+0.7
1,766,317	+		DZA65_RS08375	0.16	+1.3
1,766,317	+		DZA65_RS08375	0.16	+0.8
1,766,318	-		DZA65_RS08375	0.16	-0.5
1,766,318	-		DZA65_RS08375	0.16	-1.7
1,766,322	+		DZA65_RS08375	0.16	+1.1
1,766,323	-		DZA65_RS08375	0.16	-2.7
1,766,435	+		DZA65_RS08375	0.23	+1.4
1,766,435	+		DZA65_RS08375	0.23	-0.3
1,766,435	+		DZA65_RS08375	0.23	+1.1
1,766,435	+		DZA65_RS08375	0.23	-0.0
1,766,436	-		DZA65_RS08375	0.23	-2.0
1,766,590	+		DZA65_RS08375	0.33	+0.1
1,766,630	+		DZA65_RS08375	0.36	+1.6
1,766,630	+		DZA65_RS08375	0.36	+1.7
1,766,630	+		DZA65_RS08375	0.36	+2.4
1,766,630	+		DZA65_RS08375	0.36	+1.7
1,766,630	+		DZA65_RS08375	0.36	+0.7
1,766,630	+		DZA65_RS08375	0.36	+2.3
1,766,630	+		DZA65_RS08375	0.36	+2.0
1,766,630	+		DZA65_RS08375	0.36	-0.0
1,766,630	+		DZA65_RS08375	0.36	+2.3
1,766,630	+		DZA65_RS08375	0.36	+1.7
1,766,630	+		DZA65_RS08375	0.36	+0.4
1,766,630	+		DZA65_RS08375	0.36	-0.7
1,766,630	+		DZA65_RS08375	0.36	+0.9
1,766,631	-		DZA65_RS08375	0.36	+0.4
1,766,631	-		DZA65_RS08375	0.36	+0.3
1,766,631	-		DZA65_RS08375	0.36	-1.9
1,766,631	-		DZA65_RS08375	0.36	-1.3
1,766,633	-		DZA65_RS08375	0.36	-0.6
1,766,672	+		DZA65_RS08375	0.39	+1.2
1,766,673	-		DZA65_RS08375	0.39	+0.4
1,766,698	+		DZA65_RS08375	0.40	-0.6
1,766,858	+		DZA65_RS08375	0.51	+0.3
1,766,858	+		DZA65_RS08375	0.51	-1.7
1,766,859	-		DZA65_RS08375	0.51	-0.3
1,766,859	-		DZA65_RS08375	0.51	+0.6
1,766,878	+		DZA65_RS08375	0.52	+0.3
1,766,879	-		DZA65_RS08375	0.52	+0.1
1,766,965	+		DZA65_RS08375	0.58	+2.0
1,767,060	+		DZA65_RS08375	0.64	+0.1
1,767,060	+		DZA65_RS08375	0.64	-2.6
1,767,074	+		DZA65_RS08375	0.65	+1.1
1,767,167	-		DZA65_RS08375	0.71	-0.2
1,767,254	+		DZA65_RS08375	0.77	+1.4
1,767,532	+				+1.2
1,767,532	+				+1.3
1,767,532	+				+0.3
1,767,533	-				-0.1
1,767,554	+				+0.1
1,767,555	-				+0.2
1,767,556	+				-1.3
1,767,556	+				-0.3
1,767,556	+				-0.1
1,767,556	+				+1.2
1,767,556	+				+0.9
1,767,556	+				+0.5
1,767,556	+				-1.5
1,767,556	+				+1.0
1,767,556	+				+0.7
1,767,557	-				-0.7
1,767,557	-				+0.7
1,767,557	-				-1.7
1,767,557	-				-2.7
1,767,557	-				-0.2
1,767,557	-				-0.7
1,767,557	-				+0.8
1,767,557	-				-0.3
1,767,557	-				-2.0
1,767,557	-				-2.2
1,767,560	+				+1.0
1,767,560	+				+0.5
1,767,560	+				+0.3
1,767,560	+				-0.5
1,767,560	+				+0.3
1,767,560	+				-0.7
1,767,560	+				+0.3
1,767,560	+				+0.1
1,767,561	-				-0.7
1,767,561	-				+0.0
1,767,561	-				-0.7
1,767,561	-				-0.6
1,767,561	-				+0.2
1,767,561	-				+1.3
1,767,561	-				+1.6
1,767,581	+				+0.5
1,767,593	+				-0.6
1,767,593	+				+1.4
1,767,594	-				+1.3
1,767,611	+				+0.9
1,767,658	+				+0.9
1,767,658	+				-1.7
1,767,658	+				-0.1
1,767,658	+				+0.3
1,767,658	+				+1.2
1,767,658	+				-0.0
1,767,658	+				+2.6
1,767,658	+				-0.7
1,767,658	+				+1.1
1,767,658	+				+1.6
1,767,658	+				+1.1
1,767,658	+				+1.0
1,767,658	+				-0.5
1,767,659	-				-0.0
1,767,659	-				+0.3
1,767,659	-				+0.1
1,767,659	-				-0.7
1,767,659	-				-0.9
1,767,659	-				-1.1
1,767,659	-				+1.1
1,767,659	-				-0.0
1,767,659	-				+1.5
1,767,659	-				-2.0
1,767,659	-				-0.7
1,767,659	-				+0.6
1,767,659	-				-2.3
1,767,659	-				+0.3
1,767,659	-				-1.0
1,767,659	-				-0.1
1,767,659	-				-2.3
1,767,661	-				-0.1
1,767,661	-				-0.9
1,767,669	-				+0.3
1,767,669	-				+1.0
1,767,715	+				-0.3
1,767,716	-				+0.2
1,767,716	-				+1.0
1,767,716	-				-0.6
1,767,716	-				-0.5
1,767,716	-				+0.3
1,767,716	-				+0.1
1,767,723	+				-0.2
1,767,723	+				-0.7
1,767,723	+				+0.9
1,767,724	-				+0.1
1,767,724	-				+0.6
1,767,724	-				-0.9
1,767,724	-				-0.3
1,767,772	-				+0.3
1,767,772	-				-1.3
1,767,780	+				-1.7
1,767,780	+				+1.2
1,767,781	-				+1.0
1,767,782	+				+0.3
1,767,782	+				+0.1
1,767,782	+				+0.9
1,767,795	-				-0.5
1,767,880	+				+0.0
1,767,880	+				-1.1
1,767,881	-				+0.0
1,767,901	-				-0.2
1,767,945	+				+0.1
1,767,946	-				+1.0
1,767,948	+				+0.9
1,767,948	+				-0.4
1,767,949	-				-0.8
1,767,949	-				-0.6
1,767,949	-				-2.0
1,767,949	-				+0.3
1,767,949	-				-0.7
1,767,975	+				-0.2
1,767,975	+				-1.5
1,767,976	-				-1.0
1,767,976	-				-2.5
1,767,976	-				-0.5
1,767,976	-				-4.0
1,767,976	-				+0.1
1,767,985	-				-2.2
1,767,985	-				-0.7
1,768,069	-		DZA65_RS08380	0.11	+0.0
1,768,125	-		DZA65_RS08380	0.17	+0.3
1,768,254	+		DZA65_RS08380	0.30	-1.3
1,768,255	-		DZA65_RS08380	0.30	-0.0
1,768,329	+		DZA65_RS08380	0.38	+0.7
1,768,329	+		DZA65_RS08380	0.38	+0.0
1,768,329	+		DZA65_RS08380	0.38	-0.3
1,768,330	-		DZA65_RS08380	0.38	+0.3