Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08095

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,693,755	-		DZA65_RS08090	0.40	+2.4
1,693,910	+		DZA65_RS08090	0.51	-1.5
1,693,937	+		DZA65_RS08090	0.53	+0.3
1,693,938	-		DZA65_RS08090	0.53	+0.3
1,694,049	+		DZA65_RS08090	0.61	+0.8
1,694,050	-		DZA65_RS08090	0.61	+1.9
1,694,050	-		DZA65_RS08090	0.61	-0.2
1,694,085	-		DZA65_RS08090	0.64	-0.0
1,694,174	-		DZA65_RS08090	0.70	+0.5
1,694,280	+		DZA65_RS08090	0.77	-0.5
1,694,280	+		DZA65_RS08090	0.77	+0.6
1,694,280	+		DZA65_RS08090	0.77	+0.3
1,694,280	+		DZA65_RS08090	0.77	+0.0
1,694,281	-		DZA65_RS08090	0.77	-0.4
1,694,281	-		DZA65_RS08090	0.77	-0.3
1,694,281	-		DZA65_RS08090	0.77	-0.1
1,694,281	-		DZA65_RS08090	0.77	+2.6
1,694,563	+				-2.7
1,694,563	+				+1.0
1,694,588	+				-0.1
1,694,588	+				+0.2
1,694,589	-				+1.9
1,694,636	+				-0.1
1,694,636	+				+0.1
1,694,636	+				-0.3
1,694,637	-				-1.7
1,694,637	-				+1.3
1,694,637	-				+2.5
1,694,655	-				-0.4
1,694,673	-				-0.0
1,694,684	+				+0.2
1,694,684	+				-1.3
1,694,685	-				-2.7
1,694,685	-				-0.0
1,694,694	+				-0.4
1,694,694	+				+0.8
1,694,705	+				-0.3
1,694,717	+				+0.8
1,694,718	-				-0.2
1,694,718	-				-1.4
1,694,718	-				-2.0
1,694,718	-				+0.3
1,694,718	-				-0.4
1,694,818	+				-0.4
1,694,818	+				+0.1
1,694,819	-				-1.9
1,694,836	+				+0.9
1,694,879	+				+1.3
1,694,965	+		DZA65_RS08095	0.15	+0.4
1,694,966	-		DZA65_RS08095	0.15	-1.3
1,695,190	-		DZA65_RS08095	0.27	-0.1
1,695,205	+		DZA65_RS08095	0.27	-0.1
1,695,205	+		DZA65_RS08095	0.27	-1.3
1,695,205	+		DZA65_RS08095	0.27	+0.8
1,695,206	-		DZA65_RS08095	0.28	-0.4
1,695,206	-		DZA65_RS08095	0.28	-1.0
1,695,217	+		DZA65_RS08095	0.28	-0.6
1,695,217	+		DZA65_RS08095	0.28	-0.4
1,695,217	+		DZA65_RS08095	0.28	-0.9
1,695,218	-		DZA65_RS08095	0.28	-0.4
1,695,218	-		DZA65_RS08095	0.28	-0.7
1,695,218	-		DZA65_RS08095	0.28	+0.7
1,695,249	+		DZA65_RS08095	0.30	+0.3
1,695,427	-		DZA65_RS08095	0.39	+0.7
1,695,427	-		DZA65_RS08095	0.39	+0.1
1,695,439	+		DZA65_RS08095	0.40	+0.3
1,695,526	+		DZA65_RS08095	0.45	+0.6
1,695,526	+		DZA65_RS08095	0.45	-0.2
1,695,527	-		DZA65_RS08095	0.45	-0.3
1,695,607	+		DZA65_RS08095	0.49	-0.1
1,695,607	+		DZA65_RS08095	0.49	-0.2
1,695,608	-		DZA65_RS08095	0.49	+0.0
1,695,608	-		DZA65_RS08095	0.49	-0.5
1,695,690	+		DZA65_RS08095	0.54	-2.3
1,695,690	+		DZA65_RS08095	0.54	-0.0
1,695,691	-		DZA65_RS08095	0.54	-1.7
1,695,691	-		DZA65_RS08095	0.54	-0.7
1,695,691	-		DZA65_RS08095	0.54	-0.5
1,695,694	+		DZA65_RS08095	0.54	-0.5
1,695,694	+		DZA65_RS08095	0.54	+0.3
1,695,694	+		DZA65_RS08095	0.54	+0.5
1,695,694	+		DZA65_RS08095	0.54	-0.7
1,695,694	+		DZA65_RS08095	0.54	-0.4
1,695,695	-		DZA65_RS08095	0.54	+0.0
1,695,695	-		DZA65_RS08095	0.54	-2.5
1,695,695	-		DZA65_RS08095	0.54	-1.4
1,695,695	-		DZA65_RS08095	0.54	+0.8
1,695,820	+		DZA65_RS08095	0.61	-0.4
1,695,821	-		DZA65_RS08095	0.61	+0.3
1,695,821	-		DZA65_RS08095	0.61	-0.2
1,695,821	-		DZA65_RS08095	0.61	-1.3
1,695,838	-		DZA65_RS08095	0.62	-0.7
1,695,862	+		DZA65_RS08095	0.63	-0.7
1,695,863	-		DZA65_RS08095	0.63	-0.5
1,695,863	-				+0.3
1,695,863	-		DZA65_RS08095	0.63	-0.9
1,695,970	+		DZA65_RS08095	0.69	-1.0
1,696,074	+		DZA65_RS08095	0.74	+0.2
1,696,330	+		DZA65_RS08095	0.88	-0.8
1,696,330	+		DZA65_RS08095	0.88	+0.0
1,696,447	+				+0.9
1,696,447	+				-0.4
1,696,448	-				+0.2
1,696,448	-				-1.3
1,696,448	-				+0.9
1,696,448	-				+0.5
1,696,549	+				+0.5
1,696,549	+				-0.7
1,696,549	+				+0.6
1,696,550	-				+0.0
1,696,550	-				-1.7
1,696,550	-				+0.9
1,696,737	+		DZA65_RS08100	0.25	-1.5
1,696,738	-		DZA65_RS08100	0.25	-0.5
1,696,738	-		DZA65_RS08100	0.25	-0.1
1,696,738	-		DZA65_RS08100	0.25	+0.1
1,696,738	-		DZA65_RS08100	0.25	+0.3
1,696,875	+		DZA65_RS08100	0.42	+0.7
1,696,875	+		DZA65_RS08100	0.42	+1.6
1,696,875	+		DZA65_RS08100	0.42	-1.6
1,696,875	+		DZA65_RS08100	0.42	-0.4
1,696,875	+		DZA65_RS08100	0.42	-0.2
1,696,876	-		DZA65_RS08100	0.43	-1.5
1,696,876	-		DZA65_RS08100	0.43	-2.3
1,696,876	-		DZA65_RS08100	0.43	-0.1
1,696,950	+		DZA65_RS08100	0.52	-0.4
1,696,951	-		DZA65_RS08100	0.52	-1.3
1,696,951	-		DZA65_RS08100	0.52	-0.3
1,696,951	-		DZA65_RS08100	0.52	-0.4
1,696,951	-		DZA65_RS08100	0.52	+0.6
1,697,096	-		DZA65_RS08100	0.71	-1.3
1,697,175	+		DZA65_RS08100	0.81	+0.1
1,697,175	+		DZA65_RS08100	0.81	-1.0
1,697,175	+		DZA65_RS08100	0.81	+0.6
1,697,175	+		DZA65_RS08100	0.81	-0.1
1,697,175	+		DZA65_RS08100	0.81	-2.6
1,697,175	+				+0.3
1,697,176	-		DZA65_RS08100	0.81	-0.8
1,697,176	-				-0.7
1,697,242	+		DZA65_RS08100	0.90	-0.5
1,697,243	-		DZA65_RS08100	0.90	-0.3
1,697,278	+				+0.5
1,697,278	+				-0.5
1,697,334	+				-0.0
1,697,334	+				-0.1
1,697,334	+				+0.5
1,697,334	+				+0.0
1,697,334	+				-0.2
1,697,335	-				-0.1
1,697,335	-				-0.7
1,697,335	-				-1.1
1,697,335	-				-0.7
1,697,349	+				-2.0
1,697,349	+				+0.2
1,697,350	-				-3.0
1,697,350	-				+0.3
1,697,350	-				-0.8
1,697,350	-				+0.6
1,697,374	+				+1.3
1,697,375	-				-1.0
1,697,375	-				+0.0
1,697,375	-				-0.1
1,697,375	-				-0.5
1,697,375	-				+0.2
1,697,461	+				+0.0
1,697,461	+				+1.3
1,697,461	+				-0.5
1,697,461	+				-0.7
1,697,461	+				+0.3
1,697,462	-				+0.3
1,697,462	-				-0.5
1,697,462	-				+1.8
1,697,462	-				+0.3
1,697,462	-				-0.0
1,697,462	-				+0.3
1,697,462	-				-0.4
1,697,462	-				+0.8
1,697,462	-				-1.3
1,697,462	-				+1.0
1,697,462	-				-1.3
1,697,464	-				+1.1
1,697,489	-				-0.7