Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07640

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,589,960	-		DZA65_RS07630	0.66	-1.0
1,590,019	+		DZA65_RS07630	0.69	+1.7
1,590,020	-		DZA65_RS07630	0.69	+1.0
1,590,050	+		DZA65_RS07630	0.71	+0.6
1,590,079	+		DZA65_RS07630	0.72	+0.3
1,590,079	+		DZA65_RS07630	0.72	-1.0
1,590,079	+		DZA65_RS07630	0.72	+0.1
1,590,080	-		DZA65_RS07630	0.72	+0.5
1,590,102	-		DZA65_RS07630	0.73	+0.6
1,590,102	-		DZA65_RS07630	0.73	+0.3
1,590,103	+		DZA65_RS07630	0.73	+0.9
1,590,103	+		DZA65_RS07630	0.73	-0.7
1,590,103	+		DZA65_RS07630	0.73	+0.3
1,590,103	+		DZA65_RS07630	0.73	+0.5
1,590,103	+		DZA65_RS07630	0.73	-0.5
1,590,103	+		DZA65_RS07630	0.73	-0.0
1,590,103	+		DZA65_RS07630	0.73	+0.0
1,590,103	+		DZA65_RS07630	0.73	-0.0
1,590,103	+		DZA65_RS07630	0.73	+0.7
1,590,103	+		DZA65_RS07630	0.73	-0.5
1,590,103	+		DZA65_RS07630	0.73	-0.1
1,590,103	+		DZA65_RS07630	0.73	-0.9
1,590,103	+		DZA65_RS07630	0.73	+0.8
1,590,104	-		DZA65_RS07630	0.74	-0.1
1,590,104	-		DZA65_RS07630	0.74	-0.8
1,590,104	-		DZA65_RS07630	0.74	-0.7
1,590,104	-		DZA65_RS07630	0.74	-0.7
1,590,104	-		DZA65_RS07630	0.74	-0.4
1,590,104	-		DZA65_RS07630	0.74	-1.3
1,590,104	-		DZA65_RS07630	0.74	+0.6
1,590,104	-		DZA65_RS07630	0.74	+0.1
1,590,104	-		DZA65_RS07630	0.74	+0.2
1,590,104	-		DZA65_RS07630	0.74	-0.4
1,590,104	-		DZA65_RS07630	0.74	+1.9
1,590,104	-		DZA65_RS07630	0.74	-0.4
1,590,104	-		DZA65_RS07630	0.74	+0.1
1,590,104	-		DZA65_RS07630	0.74	-0.5
1,590,104	-		DZA65_RS07630	0.74	+0.1
1,590,128	-		DZA65_RS07630	0.75	-0.4
1,590,283	+		DZA65_RS07630	0.83	+0.4
1,590,283	+		DZA65_RS07630	0.83	+0.5
1,590,283	+		DZA65_RS07630	0.83	-1.9
1,590,283	+		DZA65_RS07630	0.83	-0.7
1,590,283	+		DZA65_RS07630	0.83	+0.5
1,590,283	+		DZA65_RS07630	0.83	+0.4
1,590,283	+		DZA65_RS07630	0.83	+0.5
1,590,283	+		DZA65_RS07630	0.83	+0.9
1,590,283	+		DZA65_RS07630	0.83	-0.0
1,590,283	+		DZA65_RS07630	0.83	+0.2
1,590,283	+		DZA65_RS07630	0.83	-1.7
1,590,283	+		DZA65_RS07630	0.83	-0.1
1,590,283	+		DZA65_RS07630	0.83	-0.3
1,590,283	+		DZA65_RS07630	0.83	-0.7
1,590,283	+		DZA65_RS07630	0.83	+1.1
1,590,283	+		DZA65_RS07630	0.83	+0.5
1,590,283	+		DZA65_RS07630	0.83	-1.0
1,590,284	-		DZA65_RS07630	0.83	+1.6
1,590,284	-		DZA65_RS07630	0.83	-2.3
1,590,284	-		DZA65_RS07630	0.83	-0.3
1,590,284	-		DZA65_RS07630	0.83	-2.3
1,590,284	-		DZA65_RS07630	0.83	+0.5
1,590,284	-		DZA65_RS07630	0.83	-2.3
1,590,284	-		DZA65_RS07630	0.83	-0.5
1,590,284	-		DZA65_RS07630	0.83	+1.7
1,590,284	-		DZA65_RS07630	0.83	+0.7
1,590,284	-		DZA65_RS07630	0.83	-0.7
1,590,284	-		DZA65_RS07630	0.83	-1.6
1,590,284	-		DZA65_RS07630	0.83	-2.0
1,590,284	-		DZA65_RS07630	0.83	-1.5
1,590,309	+		DZA65_RS07630	0.84	-1.7
1,590,309	+		DZA65_RS07630	0.84	-1.1
1,590,339	-				-0.3
1,590,352	+		DZA65_RS07630	0.86	-0.1
1,590,352	+		DZA65_RS07630	0.86	-0.3
1,590,353	-		DZA65_RS07630	0.86	+0.1
1,590,385	+		DZA65_RS07630	0.88	-0.8
1,590,385	+		DZA65_RS07630	0.88	-0.5
1,590,416	+		DZA65_RS07630	0.89	-1.4
1,590,416	+		DZA65_RS07630	0.89	-0.9
1,590,508	+				-0.6
1,590,508	+				+0.3
1,590,508	+				-0.1
1,590,508	+				+0.6
1,590,520	+				-0.5
1,590,582	-				+0.9
1,590,608	+				+0.3
1,590,608	+				+0.5
1,590,609	-				+0.1
1,590,609	-				-0.3
1,590,691	-		DZA65_RS07635	0.21	+0.4
1,590,741	-		DZA65_RS07635	0.39	+0.3
1,590,741	-		DZA65_RS07635	0.39	+0.1
1,590,832	-		DZA65_RS07635	0.72	+0.3
1,590,890	-				+0.6
1,590,897	+				-1.5
1,590,898	-				-1.3
1,590,941	+				+0.7
1,590,941	+				-0.6
1,590,941	+				-0.7
1,590,942	-				-0.4
1,590,942	-				-0.4
1,590,942	-				-1.4
1,590,942	-				-0.9
1,591,066	+		DZA65_RS07640	0.21	-1.0
1,591,067	-		DZA65_RS07640	0.21	-0.1
1,591,067	-		DZA65_RS07640	0.21	+0.0
1,591,069	+		DZA65_RS07640	0.22	-0.1
1,591,069	+				-1.3
1,591,069	+		DZA65_RS07640	0.22	+0.1
1,591,070	-		DZA65_RS07640	0.22	-0.1
1,591,070	-				-2.0
1,591,104	+		DZA65_RS07640	0.27	-0.3
1,591,105	-		DZA65_RS07640	0.27	-0.8
1,591,112	-		DZA65_RS07640	0.28	+0.2
1,591,122	+		DZA65_RS07640	0.30	+0.3
1,591,123	-		DZA65_RS07640	0.30	+0.0
1,591,123	-		DZA65_RS07640	0.30	-1.3
1,591,123	-		DZA65_RS07640	0.30	-0.1
1,591,123	-		DZA65_RS07640	0.30	-1.0
1,591,171	+		DZA65_RS07640	0.37	+0.1
1,591,171	+		DZA65_RS07640	0.37	-0.7
1,591,179	+		DZA65_RS07640	0.39	+0.4
1,591,180	-		DZA65_RS07640	0.39	-0.7
1,591,182	+		DZA65_RS07640	0.39	-0.2
1,591,182	+		DZA65_RS07640	0.39	+0.0
1,591,183	-		DZA65_RS07640	0.39	-1.0
1,591,271	+		DZA65_RS07640	0.53	-2.7
1,591,272	-		DZA65_RS07640	0.53	-0.5
1,591,272	-		DZA65_RS07640	0.53	-0.0
1,591,297	-		DZA65_RS07640	0.57	+0.3
1,591,375	+		DZA65_RS07640	0.69	-1.7
1,591,376	-		DZA65_RS07640	0.69	+0.3
1,591,414	+		DZA65_RS07640	0.75	-3.0
1,591,470	+		DZA65_RS07640	0.83	+0.0
1,591,471	-		DZA65_RS07640	0.84	+1.3
1,591,478	-		DZA65_RS07640	0.85	-0.0
1,591,604	-				-0.1
1,591,721	+		DZA65_RS07645	0.32	-0.2
1,591,769	+		DZA65_RS07645	0.52	-1.7
1,591,770	-		DZA65_RS07645	0.53	-0.7
1,591,857	+				+0.7
1,591,857	+				+0.3
1,591,858	-				-2.0
1,591,858	-				-0.3
1,591,858	-				-0.0
1,591,864	+				+0.5
1,591,864	+				+0.5
1,591,864	+				-0.3
1,591,864	+				+0.2
1,591,864	+				+0.3
1,591,864	+				-0.5
1,591,864	+				-2.5
1,591,865	-				-0.3
1,591,865	-				-0.1
1,591,865	-				+0.6
1,591,884	-				+0.6
1,591,905	+				+0.3
1,591,905	+				-0.0
1,591,906	-				+0.7
1,591,906	-				+0.3
1,591,922	-				+0.4
1,591,995	+				-1.4
1,592,014	+				+0.3
1,592,015	-				+0.1
1,592,015	-				-0.9
1,592,015	-				-0.1
1,592,021	-				+0.3
1,592,021	-				+0.7
1,592,021	-				-0.2
1,592,048	-				-0.8
1,592,048	-				+0.3
1,592,096	+				-2.9
1,592,096	+				-0.0
1,592,097	-				+0.9
1,592,097	-				+0.5
1,592,136	+				-1.1
1,592,200	-				-0.3
1,592,224	-				+0.7
1,592,227	+				-0.3
1,592,227	+				-0.3
1,592,227	+				-0.7
1,592,228	-				+0.2
1,592,228	-				+0.0
1,592,228	-				-2.0
1,592,228	-				-0.2
1,592,266	+				+0.2
1,592,268	+				-1.3
1,592,268	+				+1.0
1,592,269	-				+0.0
1,592,269	-				-2.5
1,592,323	+				-0.2
1,592,323	+				-1.6
1,592,336	-				-0.7
1,592,363	-				+0.9
1,592,413	+				+0.7
1,592,427	+				+0.6
1,592,528	-				-0.7
1,592,546	+		DZA65_RS07650	0.11	-0.9
1,592,557	-		DZA65_RS07650	0.12	-0.1