Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07535

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,563,403	+		DZA65_RS07525	0.39	+0.3
1,563,403	+		DZA65_RS07525	0.39	+0.9
1,563,630	+		DZA65_RS07525	0.63	-0.1
1,563,699	+		DZA65_RS07525	0.70	+0.1
1,563,700	-		DZA65_RS07525	0.70	-0.4
1,563,745	+		DZA65_RS07525	0.74	-2.0
1,563,756	-		DZA65_RS07525	0.76	-2.3
1,563,786	-		DZA65_RS07525	0.79	-0.4
1,563,786	-		DZA65_RS07525	0.79	+0.2
1,563,805	+		DZA65_RS07525	0.81	+0.5
1,563,806	-		DZA65_RS07525	0.81	-0.7
1,563,806	-		DZA65_RS07525	0.81	-2.7
1,563,806	-		DZA65_RS07525	0.81	-0.4
1,563,806	-		DZA65_RS07525	0.81	-0.3
1,563,806	-		DZA65_RS07525	0.81	-0.8
1,563,808	+		DZA65_RS07525	0.81	-0.7
1,563,808	+		DZA65_RS07525	0.81	+0.9
1,563,808	+		DZA65_RS07525	0.81	+0.9
1,563,808	+		DZA65_RS07525	0.81	-0.6
1,563,808	+		DZA65_RS07525	0.81	-0.3
1,563,809	-		DZA65_RS07525	0.81	+1.4
1,563,809	-		DZA65_RS07525	0.81	-0.7
1,563,809	-		DZA65_RS07525	0.81	-1.7
1,563,809	-		DZA65_RS07525	0.81	-0.8
1,563,809	-		DZA65_RS07525	0.81	-0.5
1,563,809	-		DZA65_RS07525	0.81	-1.3
1,563,810	+		DZA65_RS07525	0.81	+0.1
1,563,810	+		DZA65_RS07525	0.81	-1.0
1,563,811	-		DZA65_RS07525	0.81	-2.0
1,563,844	-		DZA65_RS07525	0.85	-0.9
1,563,913	+				-3.0
1,563,913	+				+0.9
1,563,913	+				-2.7
1,563,914	-				-0.7
1,563,914	-				+1.0
1,563,914	-				-1.0
1,563,914	-				+0.4
1,563,914	-				-1.5
1,563,933	+				-0.2
1,563,933	+				-0.7
1,563,933	+				-0.5
1,563,933	+				+0.2
1,563,933	+				-0.7
1,563,933	+				-1.1
1,563,934	-				+0.3
1,563,934	-				-3.0
1,563,949	+				-0.8
1,563,949	+				+0.3
1,563,989	+				+0.8
1,564,009	-				+0.8
1,564,009	-				-0.3
1,564,027	+				-0.6
1,564,027	+				-1.2
1,564,030	+				-0.0
1,564,030	+				-0.3
1,564,031	-				+0.0
1,564,031	-				+0.1
1,564,031	-				+0.6
1,564,031	-				+0.1
1,564,031	-				-1.3
1,564,031	-				+0.9
1,564,031	-				-0.1
1,564,036	+				-1.3
1,564,036	+				+0.1
1,564,037	-				-0.3
1,564,037	-				-1.3
1,564,037	-				-1.5
1,564,037	-				-2.0
1,564,085	+		DZA65_RS07530	0.23	-0.7
1,564,089	+		DZA65_RS07530	0.25	-0.8
1,564,089	+		DZA65_RS07530	0.25	+0.1
1,564,090	-		DZA65_RS07530	0.26	-1.7
1,564,090	-		DZA65_RS07530	0.26	-0.4
1,564,119	+		DZA65_RS07530	0.39	+0.9
1,564,119	+		DZA65_RS07530	0.39	-1.0
1,564,120	-		DZA65_RS07530	0.39	-0.8
1,564,136	+		DZA65_RS07530	0.46	+0.7
1,564,136	+		DZA65_RS07530	0.46	-0.5
1,564,184	+		DZA65_RS07530	0.68	-2.0
1,564,184	+		DZA65_RS07530	0.68	-1.5
1,564,184	+		DZA65_RS07530	0.68	+0.3
1,564,205	-		DZA65_RS07530	0.77	+0.1
1,564,264	-				-1.7
1,564,348	+				-0.6
1,564,348	+				+0.5
1,564,349	-				+0.0
1,564,349	-				-0.3
1,564,349	-				-0.1
1,564,350	+				-0.9
1,564,350	+				-0.9
1,564,350	+				-0.5
1,564,350	+				-0.7
1,564,350	+				-1.7
1,564,350	+				-1.3
1,564,350	+				+0.6
1,564,350	+				+1.2
1,564,350	+				-0.3
1,564,350	+				-0.3
1,564,350	+				-0.7
1,564,350	+				-0.7
1,564,350	+				-0.3
1,564,350	+				-0.7
1,564,351	-				+0.0
1,564,351	-				+0.1
1,564,351	-				+0.9
1,564,351	-				-1.3
1,564,351	-				+1.6
1,564,351	-				-2.5
1,564,351	-				+0.3
1,564,351	-				-2.3
1,564,351	-				-2.8
1,564,351	-				-1.7
1,564,351	-				-0.3
1,564,351	-				-2.5
1,564,356	-				-0.9
1,564,356	-				+0.0
1,564,361	+				-2.3
1,564,361	+				-0.2
1,564,361	+				-0.4
1,564,361	+				-0.9
1,564,362	-				-0.4
1,564,362	-				+0.3
1,564,363	+				-0.5
1,564,364	-				-0.2
1,564,364	-				+1.0
1,564,370	+				+0.3
1,564,371	-				+0.0
1,564,451	+				-0.4
1,564,451	+				-0.3
1,564,452	-				+0.3
1,564,452	-				+1.1
1,564,452	-				+1.3
1,564,468	+				-1.4
1,564,468	+				-0.7
1,564,468	+				-1.1
1,564,469	-				+0.3
1,564,469	-				+0.4
1,564,469	-				-0.8
1,564,472	+				+0.6
1,564,472	+				-1.3
1,564,478	-				-0.4
1,564,504	+				-0.4
1,564,505	-				-0.3
1,564,505	-				+0.3
1,564,505	-				+1.1
1,564,511	+				-2.7
1,564,523	-				-0.9
1,564,578	+				-2.0
1,564,657	+				-0.4
1,564,657	+				-2.0
1,564,657	+				+0.4
1,564,657	+				-1.7
1,564,658	-				+0.5
1,564,712	+				+1.2
1,564,713	-				+0.3
1,564,714	+				-2.7
1,564,714	+				-0.3
1,564,731	+				-1.4
1,564,732	-				+0.9
1,564,732	-				-2.1
1,564,768	-				+0.3
1,564,783	-				+0.3
1,564,791	-				-0.1
1,564,798	+				+0.3
1,564,798	+				-0.2
1,564,798	+				-0.4
1,564,798	+				-0.3
1,564,798	+				-0.3
1,564,798	+				-1.1
1,564,800	+				-0.9
1,564,848	-				-0.8
1,564,886	+				+0.6
1,564,886	+				+0.3
1,564,887	-				+0.2
1,564,887	-				+0.2
1,564,887	-				+0.3
1,564,887	-				+0.5
1,564,887	-				+0.5
1,564,887	-				-0.1
1,564,899	-				-1.3
1,564,946	+				-0.3
1,564,947	-				-0.0
1,564,985	+		DZA65_RS07535	0.10	-1.1
1,564,986	-		DZA65_RS07535	0.10	+1.1
1,564,987	+		DZA65_RS07535	0.10	+0.3
1,564,987	+		DZA65_RS07535	0.10	-0.4
1,564,988	-		DZA65_RS07535	0.10	-1.3
1,565,069	+		DZA65_RS07535	0.12	-0.9
1,565,072	+		DZA65_RS07535	0.12	+0.1
1,565,072	+		DZA65_RS07535	0.12	-1.1
1,565,118	+		DZA65_RS07535	0.13	+0.3
1,565,127	+		DZA65_RS07535	0.13	+0.7
1,565,128	-		DZA65_RS07535	0.13	-0.3
1,565,207	+		DZA65_RS07535	0.14	-1.1
1,565,236	+		DZA65_RS07535	0.15	-1.3
1,565,236	+		DZA65_RS07535	0.15	-0.5
1,565,236	+		DZA65_RS07535	0.15	-0.3
1,565,237	-		DZA65_RS07535	0.15	+0.3
1,565,248	+		DZA65_RS07535	0.15	-2.3
1,565,257	+		DZA65_RS07535	0.15	+1.6
1,565,313	+		DZA65_RS07535	0.16	+0.6
1,565,313	+		DZA65_RS07535	0.16	+0.1
1,565,419	+		DZA65_RS07535	0.18	-0.3
1,565,472	+		DZA65_RS07535	0.19	-0.1
1,565,472	+		DZA65_RS07535	0.19	-0.3
1,565,472	+		DZA65_RS07535	0.19	-1.4
1,565,472	+		DZA65_RS07535	0.19	+0.2
1,565,472	+		DZA65_RS07535	0.19	-0.4
1,565,477	+		DZA65_RS07535	0.19	-2.5
1,565,478	-		DZA65_RS07535	0.19	+0.8
1,565,515	+		DZA65_RS07535	0.19	-1.6
1,565,564	+		DZA65_RS07535	0.20	-0.7
1,565,569	-		DZA65_RS07535	0.20	+0.2
1,565,618	-		DZA65_RS07535	0.21	+0.1
1,565,618	-		DZA65_RS07535	0.21	+1.1
1,565,618	-		DZA65_RS07535	0.21	-2.3
1,565,618	-		DZA65_RS07535	0.21	-0.4
1,565,618	-		DZA65_RS07535	0.21	-0.8
1,565,639	+		DZA65_RS07535	0.22	-0.3
1,565,639	+		DZA65_RS07535	0.22	+0.6
1,565,640	-		DZA65_RS07535	0.22	-0.7
1,565,640	-		DZA65_RS07535	0.22	-3.3
1,565,640	-		DZA65_RS07535	0.22	-0.2
1,565,682	+		DZA65_RS07535	0.22	+1.1
1,565,682	+		DZA65_RS07535	0.22	-0.3
1,565,682	+		DZA65_RS07535	0.22	-1.3
1,565,682	+		DZA65_RS07535	0.22	-1.0
1,565,683	-		DZA65_RS07535	0.22	+0.5
1,565,683	-		DZA65_RS07535	0.22	+0.7
1,565,683	-		DZA65_RS07535	0.22	-0.9
1,565,683	-		DZA65_RS07535	0.22	-2.3
1,565,683	-		DZA65_RS07535	0.22	-1.0
1,565,727	-		DZA65_RS07535	0.23	-0.1
1,565,871	+		DZA65_RS07535	0.26	+0.1
1,565,917	-		DZA65_RS07535	0.26	-2.0
1,565,947	-		DZA65_RS07535	0.27	+0.1
1,566,026	+		DZA65_RS07535	0.28	-3.0
1,566,112	+		DZA65_RS07535	0.30	-0.4
1,566,116	-		DZA65_RS07535	0.30	-3.0
1,566,128	+		DZA65_RS07535	0.30	-0.8
1,566,130	+		DZA65_RS07535	0.30	-0.0
1,566,131	-		DZA65_RS07535	0.30	+0.0
1,566,187	+		DZA65_RS07535	0.31	+0.0
1,566,187	+		DZA65_RS07535	0.31	-0.0
1,566,189	+		DZA65_RS07535	0.31	-0.8
1,566,190	-		DZA65_RS07535	0.31	-0.4
1,566,190	-		DZA65_RS07535	0.31	-0.2
1,566,192	+		DZA65_RS07535	0.31	+0.6
1,566,192	+		DZA65_RS07535	0.31	+1.7
1,566,192	+		DZA65_RS07535	0.31	+0.9
1,566,193	-		DZA65_RS07535	0.31	+1.4
1,566,193	-		DZA65_RS07535	0.31	+1.1
1,566,193	-		DZA65_RS07535	0.31	-1.1
1,566,193	-		DZA65_RS07535	0.31	-0.3
1,566,193	-		DZA65_RS07535	0.31	+1.9
1,566,196	-		DZA65_RS07535	0.31	-0.7
1,566,196	-		DZA65_RS07535	0.31	+0.8
1,566,196	-		DZA65_RS07535	0.31	+1.7
1,566,196	-		DZA65_RS07535	0.31	-1.7
1,566,226	+		DZA65_RS07535	0.32	-0.7
1,566,295	+		DZA65_RS07535	0.33	+1.4
1,566,314	+		DZA65_RS07535	0.33	-0.6
1,566,323	+		DZA65_RS07535	0.33	-0.3
1,566,353	+		DZA65_RS07535	0.34	+0.3
1,566,353	+		DZA65_RS07535	0.34	-1.2
1,566,354	-		DZA65_RS07535	0.34	+1.3
1,566,414	+		DZA65_RS07535	0.35	+0.2
1,566,415	-		DZA65_RS07535	0.35	+0.7
1,566,445	+		DZA65_RS07535	0.35	-0.5
1,566,506	-		DZA65_RS07535	0.36	+0.2
1,566,535	-		DZA65_RS07535	0.37	-1.0
1,566,535	-		DZA65_RS07535	0.37	-2.0
1,566,611	+		DZA65_RS07535	0.38	-0.8
1,566,612	-		DZA65_RS07535	0.38	+0.3
1,566,658	+		DZA65_RS07535	0.39	-1.4
1,566,725	-		DZA65_RS07535	0.40	-1.9
1,566,832	+		DZA65_RS07535	0.42	-0.5
1,566,832	+		DZA65_RS07535	0.42	-0.0
1,566,832	+				-1.3
1,566,832	+		DZA65_RS07535	0.42	+2.1
1,566,832	+		DZA65_RS07535	0.42	+0.3
1,566,832	+		DZA65_RS07535	0.42	+0.8
1,566,841	+		DZA65_RS07535	0.42	+0.2
1,566,848	+		DZA65_RS07535	0.42	+1.1
1,566,854	+		DZA65_RS07535	0.42	-0.4
1,566,914	-		DZA65_RS07535	0.44	+0.3
1,566,949	+		DZA65_RS07535	0.44	-0.5
1,566,950	-		DZA65_RS07535	0.44	+1.1
1,566,950	-		DZA65_RS07535	0.44	-0.8
1,566,950	-		DZA65_RS07535	0.44	+1.1
1,566,975	-		DZA65_RS07535	0.45	-0.9
1,566,975	-		DZA65_RS07535	0.45	-0.7
1,567,390	+		DZA65_RS07535	0.52	-1.5
1,567,392	+		DZA65_RS07535	0.52	-0.7
1,567,392	+		DZA65_RS07535	0.52	-1.1
1,567,393	-		DZA65_RS07535	0.52	-0.2
1,567,393	-		DZA65_RS07535	0.52	+0.2
1,567,398	+		DZA65_RS07535	0.52	-0.5
1,567,466	+		DZA65_RS07535	0.53	+0.1
1,567,472	-		DZA65_RS07535	0.53	+0.4
1,567,476	-		DZA65_RS07535	0.53	-1.1
1,567,537	-		DZA65_RS07535	0.54	-1.0
1,567,537	-		DZA65_RS07535	0.54	-1.4
1,567,609	+		DZA65_RS07535	0.55	+0.5
1,567,610	-		DZA65_RS07535	0.55	-0.8
1,567,613	-		DZA65_RS07535	0.56	+0.7
1,567,613	-		DZA65_RS07535	0.56	-0.2
1,567,613	-		DZA65_RS07535	0.56	-0.4
1,567,613	-		DZA65_RS07535	0.56	-0.8
1,567,614	+		DZA65_RS07535	0.56	+0.7
1,567,614	+		DZA65_RS07535	0.56	+0.2
1,567,614	+		DZA65_RS07535	0.56	+0.0
1,567,615	-		DZA65_RS07535	0.56	-1.7
1,567,661	+		DZA65_RS07535	0.56	+0.8
1,567,662	-		DZA65_RS07535	0.56	-0.7
1,567,682	+		DZA65_RS07535	0.57	+0.0
1,567,747	+		DZA65_RS07535	0.58	+0.2
1,567,748	-		DZA65_RS07535	0.58	+0.2
1,567,788	-		DZA65_RS07535	0.59	+0.3
1,567,865	-		DZA65_RS07535	0.60	+1.2
1,567,882	-		DZA65_RS07535	0.60	+0.3
1,567,949	-		DZA65_RS07535	0.61	+0.6
1,567,972	-		DZA65_RS07535	0.62	-0.7
1,567,972	-		DZA65_RS07535	0.62	-0.7
1,567,972	-		DZA65_RS07535	0.62	-1.0
1,568,009	+		DZA65_RS07535	0.62	-0.3
1,568,009	+		DZA65_RS07535	0.62	+0.2
1,568,009	+		DZA65_RS07535	0.62	+0.7
1,568,009	+		DZA65_RS07535	0.62	+0.1
1,568,009	+		DZA65_RS07535	0.62	-0.3
1,568,010	-		DZA65_RS07535	0.62	+0.3
1,568,010	-		DZA65_RS07535	0.62	-1.1
1,568,010	-		DZA65_RS07535	0.62	+0.8
1,568,011	+		DZA65_RS07535	0.62	-0.2
1,568,038	+		DZA65_RS07535	0.63	-0.1
1,568,039	-		DZA65_RS07535	0.63	-1.3
1,568,039	-		DZA65_RS07535	0.63	-0.9
1,568,048	-		DZA65_RS07535	0.63	-0.0
1,568,141	-		DZA65_RS07535	0.65	-3.0
1,568,141	-		DZA65_RS07535	0.65	+0.2
1,568,148	+		DZA65_RS07535	0.65	-0.1
1,568,148	+		DZA65_RS07535	0.65	-0.7
1,568,148	+		DZA65_RS07535	0.65	-2.6
1,568,148	+		DZA65_RS07535	0.65	+0.2
1,568,149	-		DZA65_RS07535	0.65	-0.7
1,568,149	-		DZA65_RS07535	0.65	-0.8
1,568,149	-		DZA65_RS07535	0.65	+0.3
1,568,149	-		DZA65_RS07535	0.65	+0.3
1,568,149	-		DZA65_RS07535	0.65	-0.0
1,568,151	+		DZA65_RS07535	0.65	+0.1
1,568,152	-		DZA65_RS07535	0.65	+1.7
1,568,152	-		DZA65_RS07535	0.65	-0.2
1,568,215	+		DZA65_RS07535	0.66	-1.0
1,568,215	+		DZA65_RS07535	0.66	+1.3
1,568,215	+		DZA65_RS07535	0.66	-0.2
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