Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05685

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,169,879	+		DZA65_RS05680	0.51	-0.6
1,169,879	+		DZA65_RS05680	0.51	+0.2
1,169,879	+		DZA65_RS05680	0.51	+0.0
1,169,879	+		DZA65_RS05680	0.51	+0.8
1,169,880	-		DZA65_RS05680	0.51	+0.6
1,169,880	-		DZA65_RS05680	0.51	-0.2
1,169,880	-		DZA65_RS05680	0.51	+0.2
1,169,880	-		DZA65_RS05680	0.51	+0.3
1,169,900	+		DZA65_RS05680	0.52	-0.7
1,169,900	+		DZA65_RS05680	0.52	+0.5
1,169,900	+		DZA65_RS05680	0.52	-0.9
1,169,900	+		DZA65_RS05680	0.52	+0.7
1,169,900	+		DZA65_RS05680	0.52	-0.4
1,169,901	-		DZA65_RS05680	0.52	-0.9
1,169,901	-		DZA65_RS05680	0.52	+0.9
1,169,901	-		DZA65_RS05680	0.52	-0.8
1,169,946	+		DZA65_RS05680	0.55	+0.8
1,169,947	-		DZA65_RS05680	0.55	+0.0
1,169,947	-		DZA65_RS05680	0.55	+1.0
1,170,058	+		DZA65_RS05680	0.61	+1.1
1,170,058	+		DZA65_RS05680	0.61	+1.7
1,170,058	+		DZA65_RS05680	0.61	+0.1
1,170,058	+		DZA65_RS05680	0.61	+1.4
1,170,059	-		DZA65_RS05680	0.61	-1.2
1,170,059	-		DZA65_RS05680	0.61	+1.8
1,170,059	-		DZA65_RS05680	0.61	-0.1
1,170,186	+		DZA65_RS05680	0.68	+0.3
1,170,187	-		DZA65_RS05680	0.68	-0.5
1,170,272	-		DZA65_RS05680	0.73	+0.9
1,170,293	+		DZA65_RS05680	0.74	+0.2
1,170,294	-		DZA65_RS05680	0.74	+0.0
1,170,294	-		DZA65_RS05680	0.74	+0.5
1,170,294	-		DZA65_RS05680	0.74	+0.8
1,170,329	-		DZA65_RS05680	0.76	-1.0
1,170,329	-		DZA65_RS05680	0.76	+1.4
1,170,329	-		DZA65_RS05680	0.76	-0.5
1,170,329	-		DZA65_RS05680	0.76	+0.4
1,170,361	+		DZA65_RS05680	0.78	+0.6
1,170,362	-		DZA65_RS05680	0.78	-0.0
1,170,410	+		DZA65_RS05680	0.81	-0.4
1,170,410	+		DZA65_RS05680	0.81	-0.6
1,170,410	+		DZA65_RS05680	0.81	-1.3
1,170,410	+		DZA65_RS05680	0.81	-0.9
1,170,410	+		DZA65_RS05680	0.81	-0.8
1,170,410	+		DZA65_RS05680	0.81	+0.1
1,170,410	+		DZA65_RS05680	0.81	-0.5
1,170,410	+		DZA65_RS05680	0.81	+1.0
1,170,410	+		DZA65_RS05680	0.81	-1.4
1,170,410	+		DZA65_RS05680	0.81	-0.1
1,170,410	+		DZA65_RS05680	0.81	+0.2
1,170,410	+		DZA65_RS05680	0.81	-0.9
1,170,410	+		DZA65_RS05680	0.81	-0.9
1,170,410	+		DZA65_RS05680	0.81	-1.6
1,170,410	+		DZA65_RS05680	0.81	+0.1
1,170,410	+		DZA65_RS05680	0.81	+0.4
1,170,410	+		DZA65_RS05680	0.81	+0.9
1,170,410	+		DZA65_RS05680	0.81	+0.4
1,170,410	+		DZA65_RS05680	0.81	+0.8
1,170,411	-		DZA65_RS05680	0.81	-0.5
1,170,411	-		DZA65_RS05680	0.81	-0.6
1,170,411	-		DZA65_RS05680	0.81	-0.1
1,170,411	-		DZA65_RS05680	0.81	-0.6
1,170,411	-		DZA65_RS05680	0.81	+0.4
1,170,411	-		DZA65_RS05680	0.81	-0.6
1,170,411	-		DZA65_RS05680	0.81	-2.9
1,170,411	-		DZA65_RS05680	0.81	-0.4
1,170,411	-		DZA65_RS05680	0.81	+1.2
1,170,411	-		DZA65_RS05680	0.81	+1.4
1,170,411	-		DZA65_RS05680	0.81	+0.4
1,170,412	+		DZA65_RS05680	0.81	+1.6
1,170,413	-		DZA65_RS05680	0.81	-2.1
1,170,428	+		DZA65_RS05680	0.82	+1.6
1,170,428	+		DZA65_RS05680	0.82	+0.6
1,170,428	+		DZA65_RS05680	0.82	+0.2
1,170,429	-		DZA65_RS05680	0.82	-0.7
1,170,429	-		DZA65_RS05680	0.82	-0.8
1,170,429	-		DZA65_RS05680	0.82	-1.6
1,170,452	+		DZA65_RS05680	0.83	+0.7
1,170,464	+		DZA65_RS05680	0.84	-1.6
1,170,464	+		DZA65_RS05680	0.84	-0.8
1,170,464	+		DZA65_RS05680	0.84	-0.2
1,170,464	+		DZA65_RS05680	0.84	-1.2
1,170,465	-		DZA65_RS05680	0.84	-2.9
1,170,465	-		DZA65_RS05680	0.84	-1.2
1,170,536	-		DZA65_RS05680	0.88	-1.6
1,170,605	+				+0.4
1,170,606	-				+1.0
1,170,606	-				-1.2
1,170,606	-				-0.1
1,170,606	-				-0.0
1,170,631	+				-1.9
1,170,632	-				-1.1
1,170,632	-				+0.1
1,170,632	-				+1.0
1,170,767	+				+0.2
1,170,767	+				-3.4
1,170,767	+				-0.1
1,170,767	+				-1.8
1,170,768	-				-0.2
1,170,824	+				-0.2
1,170,824	+				+1.0
1,170,825	-				-1.8
1,170,825	-				+0.1
1,170,876	-				+0.3
1,170,876	-				-0.8
1,170,876	-				+0.8
1,171,235	+		DZA65_RS05685	0.34	-0.4
1,171,236	-		DZA65_RS05685	0.34	-0.3
1,171,311	+		DZA65_RS05685	0.40	+1.2
1,171,311	+		DZA65_RS05685	0.40	+0.2
1,171,311	+		DZA65_RS05685	0.40	-0.6
1,171,312	-				+0.4
1,171,380	+		DZA65_RS05685	0.46	-1.0
1,171,380	+		DZA65_RS05685	0.46	+0.3
1,171,381	-		DZA65_RS05685	0.46	+0.1
1,171,381	-		DZA65_RS05685	0.46	-0.9
1,171,381	-		DZA65_RS05685	0.46	-0.4
1,171,381	-		DZA65_RS05685	0.46	+0.5
1,171,381	-		DZA65_RS05685	0.46	-0.1
1,171,469	+		DZA65_RS05685	0.53	-0.8
1,171,469	+		DZA65_RS05685	0.53	+0.4
1,171,469	+		DZA65_RS05685	0.53	-3.1
1,171,469	+		DZA65_RS05685	0.53	+0.6
1,171,469	+		DZA65_RS05685	0.53	-1.4
1,171,469	+		DZA65_RS05685	0.53	-1.6
1,171,469	+		DZA65_RS05685	0.53	+0.9
1,171,469	+		DZA65_RS05685	0.53	+0.2
1,171,470	-		DZA65_RS05685	0.53	-0.4
1,171,470	-		DZA65_RS05685	0.53	+1.0
1,171,470	-		DZA65_RS05685	0.53	+0.8
1,171,470	-		DZA65_RS05685	0.53	+0.2
1,171,470	-		DZA65_RS05685	0.53	-2.4
1,171,470	-		DZA65_RS05685	0.53	-0.6
1,171,470	-		DZA65_RS05685	0.53	-0.1
1,171,470	-		DZA65_RS05685	0.53	-0.2
1,171,470	-		DZA65_RS05685	0.53	-0.5
1,171,470	-		DZA65_RS05685	0.53	-0.1
1,171,470	-		DZA65_RS05685	0.53	-1.4
1,171,470	-		DZA65_RS05685	0.53	-0.5
1,171,470	-		DZA65_RS05685	0.53	+0.4
1,171,470	-		DZA65_RS05685	0.53	+0.6
1,171,470	-		DZA65_RS05685	0.53	-0.1
1,171,470	-		DZA65_RS05685	0.53	-1.9
1,171,470	-		DZA65_RS05685	0.53	+0.4
1,171,470	-		DZA65_RS05685	0.53	+1.0
1,171,470	-		DZA65_RS05685	0.53	+0.5
1,171,476	-		DZA65_RS05685	0.53	+0.1
1,171,532	+		DZA65_RS05685	0.58	-0.3
1,171,533	-		DZA65_RS05685	0.58	-0.0
1,171,556	+		DZA65_RS05685	0.60	-0.8
1,171,557	-		DZA65_RS05685	0.60	-0.9
1,171,724	+		DZA65_RS05685	0.74	+0.4
1,171,725	-		DZA65_RS05685	0.74	-1.2
1,171,725	-				-0.6
1,171,725	-		DZA65_RS05685	0.74	-0.7
1,171,746	+		DZA65_RS05685	0.76	-0.2
1,171,746	+		DZA65_RS05685	0.76	+0.0
1,171,747	-		DZA65_RS05685	0.76	+0.4
1,171,747	-		DZA65_RS05685	0.76	-0.5
1,171,747	-		DZA65_RS05685	0.76	-0.5
1,171,777	+		DZA65_RS05685	0.78	-1.1
1,171,778	-		DZA65_RS05685	0.78	-0.4
1,171,812	+		DZA65_RS05685	0.81	-0.0
1,171,829	+		DZA65_RS05685	0.82	-0.8
1,171,829	+		DZA65_RS05685	0.82	-2.9
1,171,829	+		DZA65_RS05685	0.82	-1.2
1,171,829	+		DZA65_RS05685	0.82	+1.1
1,171,830	-		DZA65_RS05685	0.82	-0.0
1,171,830	-		DZA65_RS05685	0.82	-0.2
1,171,830	-		DZA65_RS05685	0.82	-2.1
1,171,931	+				+0.5
1,171,931	+				+0.1
1,171,931	+				-0.3
1,171,931	+				+0.5
1,171,931	+				+0.1
1,171,931	+				-0.1
1,171,931	+				+0.2
1,171,931	+				-0.5
1,171,931	+				+0.8
1,171,931	+				-0.8
1,171,932	-				-0.6
1,171,932	-				-0.4
1,171,932	-				+0.4
1,171,932	-				-1.3
1,171,932	-				+0.1
1,171,932	-				-0.2
1,171,932	-				-0.4
1,171,932	-				-1.5
1,172,073	+				+0.0
1,172,073	+				-0.1
1,172,074	-				+0.1
1,172,074	-				+0.4
1,172,074	-				-0.2
1,172,074	-				+0.8
1,172,074	-				-1.2
1,172,127	+				-0.1
1,172,128	-				-0.3
1,172,128	-				-0.4
1,172,133	+				-0.0
1,172,133	+				-0.8
1,172,133	+				+1.4
1,172,133	+				-0.0
1,172,133	+				-0.4
1,172,133	+				+1.1
1,172,133	+				-0.6
1,172,134	-				+0.6
1,172,134	-				-0.1
1,172,134	-				+0.9
1,172,134	-				+0.0
1,172,134	-				-0.4
1,172,134	-				-0.3
1,172,134	-				+0.1
1,172,134	-				-0.0
1,172,144	+				-1.2
1,172,265	-				+2.1
1,172,265	-				-1.2
1,172,318	-				+1.0
1,172,457	+		DZA65_RS05690	0.19	-1.6
1,172,741	+				+0.4
1,172,741	+				-0.8
1,172,741	+				-0.0
1,172,742	-				-2.2
1,172,742	-				-0.2
1,172,744	+				-0.5
1,172,744	+				-0.3
1,172,744	+				+0.4
1,172,744	+				+0.3
1,172,744	+				-2.8
1,172,744	+				+0.5
1,172,745	-				+0.9
1,172,745	-				+0.7
1,172,745	-				+0.2
1,172,856	+				-0.0
1,172,856	+				+0.3
1,172,856	+				-1.4
1,172,856	+				+1.1
1,172,856	+				+0.5
1,172,857	-				+0.1
1,172,857	-				-0.7
1,172,857	-				-0.0
1,172,857	-				+0.9
1,172,858	+				+0.0
1,172,858	+				+1.1
1,172,858	+				-0.6
1,172,858	+				-0.4
1,172,858	+				+0.2
1,172,858	+				-0.2
1,172,858	+				-3.6
1,172,858	+				-0.2
1,172,858	+				-0.2
1,172,858	+				+0.1
1,172,858	+				+0.0
1,172,858	+				-0.0
1,172,858	+				-0.8
1,172,858	+				+0.5
1,172,858	+				+3.2
1,172,859	-				+0.4
1,172,859	-				-0.7
1,172,859	-				-0.0
1,172,859	-				-1.6
1,172,859	-				-0.3
1,172,859	-				-1.9
1,172,859	-				+0.8
1,172,859	-				+1.4
1,172,894	+				+0.8
1,172,894	+				-0.9
1,172,894	+				-0.4
1,172,894	+				-1.6
1,172,895	-				+0.1
1,172,895	-				+2.0
1,172,913	+		DZA65_RS05695	0.11	-1.2
1,172,918	+		DZA65_RS05695	0.12	+1.2
1,172,918	+		DZA65_RS05695	0.12	+0.4
1,172,918	+		DZA65_RS05695	0.12	-0.3
1,172,919	-		DZA65_RS05695	0.12	+1.7
1,172,919	-		DZA65_RS05695	0.12	-0.6
1,172,919	-		DZA65_RS05695	0.12	+0.4
1,173,008	+		DZA65_RS05695	0.24	-1.4
1,173,008	+		DZA65_RS05695	0.24	+0.5
1,173,008	+		DZA65_RS05695	0.24	+0.8
1,173,008	+		DZA65_RS05695	0.24	+0.4