Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05280

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,086,616	+		DZA65_RS05270	0.63	-0.7
1,086,617	-		DZA65_RS05270	0.63	-1.1
1,086,617	-		DZA65_RS05270	0.63	+1.3
1,086,617	-		DZA65_RS05270	0.63	+0.0
1,086,628	+		DZA65_RS05270	0.64	-0.2
1,086,629	-		DZA65_RS05270	0.64	+0.9
1,086,799	+		DZA65_RS05270	0.80	+0.9
1,086,799	+		DZA65_RS05270	0.80	-0.5
1,086,799	+				-0.6
1,086,799	+		DZA65_RS05270	0.80	-2.2
1,086,799	+		DZA65_RS05270	0.80	-0.1
1,086,799	+		DZA65_RS05270	0.80	+1.4
1,086,799	+		DZA65_RS05270	0.80	-1.2
1,086,800	-		DZA65_RS05270	0.81	+0.4
1,086,800	-		DZA65_RS05270	0.81	-0.2
1,086,800	-		DZA65_RS05270	0.81	+0.7
1,086,800	-		DZA65_RS05270	0.81	+0.2
1,086,800	-		DZA65_RS05270	0.81	+0.8
1,086,800	-		DZA65_RS05270	0.81	-0.4
1,086,800	-		DZA65_RS05270	0.81	+1.6
1,086,800	-		DZA65_RS05270	0.81	+0.3
1,086,857	+		DZA65_RS05270	0.86	-0.3
1,086,857	+		DZA65_RS05270	0.86	-1.4
1,086,857	+		DZA65_RS05270	0.86	-0.6
1,086,858	-		DZA65_RS05270	0.86	-0.0
1,086,959	+				-0.0
1,086,959	+				+0.2
1,086,959	+				+1.4
1,086,960	-				+0.1
1,086,960	-				+0.3
1,086,960	-				-0.1
1,086,986	+				+0.8
1,086,987	-				+0.2
1,086,987	-				+2.0
1,086,994	+				+0.4
1,086,994	+				-0.9
1,086,994	+				+0.2
1,086,995	-				-0.2
1,086,995	-				+0.0
1,086,995	-				-0.6
1,086,995	-				-0.3
1,087,016	+				-1.1
1,087,016	+				+1.7
1,087,060	+				+0.1
1,087,060	+				+0.4
1,087,061	-				-1.9
1,087,062	+				-0.4
1,087,062	+				-1.9
1,087,063	-				+0.4
1,087,217	+				+0.4
1,087,217	+				+0.2
1,087,218	-				-1.6
1,087,218	-				+0.7
1,087,218	-				+0.9
1,087,218	-				+0.9
1,087,218	-				-0.2
1,087,228	+				-0.2
1,087,228	+				-1.3
1,087,229	-				-0.6
1,087,229	-				-1.6
1,087,281	+		DZA65_RS05275	0.30	-0.6
1,087,281	+		DZA65_RS05275	0.30	+1.0
1,087,282	-		DZA65_RS05275	0.30	+0.9
1,087,282	-		DZA65_RS05275	0.30	+0.4
1,087,283	+		DZA65_RS05275	0.31	-1.9
1,087,283	+		DZA65_RS05275	0.31	-0.3
1,087,283	+		DZA65_RS05275	0.31	+0.8
1,087,283	+		DZA65_RS05275	0.31	+1.6
1,087,284	-		DZA65_RS05275	0.31	-0.6
1,087,284	-		DZA65_RS05275	0.31	-0.2
1,087,284	-		DZA65_RS05275	0.31	-0.5
1,087,364	+		DZA65_RS05275	0.68	+1.1
1,087,364	+		DZA65_RS05275	0.68	+0.5
1,087,364	+		DZA65_RS05275	0.68	-1.0
1,087,364	+		DZA65_RS05275	0.68	-0.2
1,087,365	-		DZA65_RS05275	0.68	-1.6
1,087,365	-		DZA65_RS05275	0.68	+0.4
1,087,365	-		DZA65_RS05275	0.68	-0.4
1,087,365	-		DZA65_RS05275	0.68	-0.8
1,087,365	-		DZA65_RS05275	0.68	-0.0
1,087,365	-		DZA65_RS05275	0.68	+0.4
1,087,365	-		DZA65_RS05275	0.68	+0.1
1,087,365	-		DZA65_RS05275	0.68	+0.8
1,087,365	-		DZA65_RS05275	0.68	-1.1
1,087,365	-				+0.4
1,087,365	-		DZA65_RS05275	0.68	-0.3
1,087,365	-		DZA65_RS05275	0.68	-0.1
1,087,365	-		DZA65_RS05275	0.68	-2.4
1,087,443	+				+0.5
1,087,443	+				-0.4
1,087,450	+				+0.3
1,087,451	-				-2.1
1,087,455	-				+0.4
1,087,483	+				-0.1
1,087,515	+				-1.2
1,087,515	+				+0.4
1,087,538	-				-1.6
1,087,565	-				+1.7
1,087,664	+				+2.7
1,087,664	+				+3.4
1,087,664	+		DZA65_RS05280	0.11	-1.9
1,087,665	-		DZA65_RS05280	0.11	-0.5
1,087,665	-		DZA65_RS05280	0.11	+0.4
1,087,665	-		DZA65_RS05280	0.11	+0.0
1,087,665	-		DZA65_RS05280	0.11	+0.0
1,087,665	-		DZA65_RS05280	0.11	-1.4
1,087,670	+		DZA65_RS05280	0.11	-0.2
1,087,670	+		DZA65_RS05280	0.11	-1.1
1,087,670	+		DZA65_RS05280	0.11	+0.5
1,087,671	-		DZA65_RS05280	0.12	-1.2
1,087,671	-		DZA65_RS05280	0.12	-1.4
1,087,671	-		DZA65_RS05280	0.12	+0.8
1,087,671	-		DZA65_RS05280	0.12	-0.0
1,087,671	-		DZA65_RS05280	0.12	-0.1
1,087,839	+		DZA65_RS05280	0.35	+0.2
1,087,839	+				-0.6
1,087,839	+		DZA65_RS05280	0.35	+0.5
1,087,840	-		DZA65_RS05280	0.35	+0.9
1,087,840	-		DZA65_RS05280	0.35	-2.8
1,087,840	-		DZA65_RS05280	0.35	-0.6
1,087,840	-		DZA65_RS05280	0.35	+0.4
1,087,872	+		DZA65_RS05280	0.40	-1.2
1,087,911	+		DZA65_RS05280	0.45	-2.2
1,087,911	+		DZA65_RS05280	0.45	+0.4
1,087,911	+		DZA65_RS05280	0.45	+0.4
1,087,953	+		DZA65_RS05280	0.51	-0.1
1,087,953	+		DZA65_RS05280	0.51	-0.5
1,087,953	+		DZA65_RS05280	0.51	+1.7
1,087,953	+		DZA65_RS05280	0.51	+0.4
1,087,953	+		DZA65_RS05280	0.51	+1.7
1,087,953	+		DZA65_RS05280	0.51	+1.0
1,087,953	+		DZA65_RS05280	0.51	+0.4
1,087,954	-		DZA65_RS05280	0.51	-0.2
1,087,954	-		DZA65_RS05280	0.51	-0.5
1,087,954	-		DZA65_RS05280	0.51	-0.8
1,087,954	-		DZA65_RS05280	0.51	+0.8
1,088,068	+				+2.2
1,088,068	+		DZA65_RS05280	0.67	+0.3
1,088,068	+		DZA65_RS05280	0.67	+0.8
1,088,074	-		DZA65_RS05280	0.68	+1.4
1,088,139	+		DZA65_RS05280	0.77	-1.4
1,088,139	+		DZA65_RS05280	0.77	+0.5
1,088,139	+		DZA65_RS05280	0.77	+0.5
1,088,227	+		DZA65_RS05280	0.89	+1.6
1,088,228	-		DZA65_RS05280	0.89	+0.9
1,088,248	+				-1.3
1,088,249	-				+0.1
1,088,253	+				-1.5
1,088,253	+				+0.7
1,088,253	+				-0.2
1,088,253	+				-0.4
1,088,253	+				-0.2
1,088,253	+				-0.6
1,088,253	+				+0.4
1,088,253	+				+0.3
1,088,254	-				-0.8
1,088,254	-				+0.4
1,088,254	-				-0.4
1,088,378	+				-0.9
1,088,378	+				-1.6
1,088,379	-				+2.0
1,088,379	-				+1.9
1,088,379	-				-1.3
1,088,404	+				+1.4
1,088,404	+				+0.3
1,088,435	+				-0.5
1,088,435	+				-1.5
1,088,435	+				-0.3
1,088,435	+				+1.4
1,088,435	+				+1.0
1,088,435	+				-0.5
1,088,435	+				+0.0
1,088,435	+				+0.2
1,088,435	+				-0.3
1,088,435	+				+0.5
1,088,436	-				+0.1
1,088,436	-				+0.7
1,088,436	-				-0.3
1,088,436	-				-0.0
1,088,438	+				-0.2
1,088,438	+				-0.3
1,088,439	-				-0.8
1,088,455	+				+0.7
1,088,628	+		DZA65_RS05285	0.33	+0.2
1,088,628	+		DZA65_RS05285	0.33	+2.1
1,088,678	+		DZA65_RS05285	0.40	-0.1
1,088,958	-		DZA65_RS05285	0.81	-1.1
1,089,111	+				+0.8
1,089,112	-				+0.5
1,089,112	-				-1.2
1,089,133	+				+0.1
1,089,184	+				-0.2
1,089,190	+				-2.4
1,089,191	-				-0.6
1,089,191	-				-0.8
1,089,287	+				-0.8
1,089,287	+				+0.3
1,089,288	-				-0.3
1,089,293	-				+0.4