Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS03895

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS03890 and DZA65_RS03895 are separated by 26 nucleotidesDZA65_RS03895 and DZA65_RS03900 are separated by 23 nucleotides DZA65_RS03890: DZA65_RS03890 - 5-dehydro-2-deoxygluconokinase, at 826,379 to 828,322 _RS03890 DZA65_RS03895: DZA65_RS03895 - myo-inosose-2 dehydratase, at 828,349 to 829,239 _RS03895 DZA65_RS03900: DZA65_RS03900 - 5-deoxy-glucuronate isomerase, at 829,263 to 830,090 _RS03900 Position (kb) 828 829 830Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 827.362 kb on + strand, within DZA65_RS03890at 827.362 kb on + strand, within DZA65_RS03890at 827.362 kb on + strand, within DZA65_RS03890at 827.363 kb on - strand, within DZA65_RS03890at 827.366 kb on + strand, within DZA65_RS03890at 827.366 kb on + strand, within DZA65_RS03890at 827.366 kb on + strand, within DZA65_RS03890at 827.366 kb on + strand, within DZA65_RS03890at 827.366 kb on + strand, within DZA65_RS03890at 827.366 kb on + strand, within DZA65_RS03890at 827.366 kb on + strand, within DZA65_RS03890at 827.366 kb on + strand, within DZA65_RS03890at 827.366 kb on + strand, within DZA65_RS03890at 827.366 kb on + strand, within DZA65_RS03890at 827.366 kb on + strand, within DZA65_RS03890at 827.366 kb on + strand, within DZA65_RS03890at 827.367 kb on - strand, within DZA65_RS03890at 827.367 kb on - strand, within DZA65_RS03890at 827.367 kb on - strand, within DZA65_RS03890at 827.367 kb on - strand, within DZA65_RS03890at 827.367 kb on - strand, within DZA65_RS03890at 827.367 kb on - strand, within DZA65_RS03890at 827.367 kb on - strand, within DZA65_RS03890at 827.367 kb on - strand, within DZA65_RS03890at 827.367 kb on - strand, within DZA65_RS03890at 827.655 kb on + strand, within DZA65_RS03890at 827.655 kb on + strandat 827.656 kb on - strand, within DZA65_RS03890at 827.656 kb on - strand, within DZA65_RS03890at 827.658 kb on + strand, within DZA65_RS03890at 827.658 kb on + strand, within DZA65_RS03890at 827.658 kb on + strand, within DZA65_RS03890at 827.692 kb on + strandat 827.693 kb on - strand, within DZA65_RS03890at 827.693 kb on - strand, within DZA65_RS03890at 827.891 kb on + strand, within DZA65_RS03890at 827.892 kb on - strand, within DZA65_RS03890at 827.892 kb on - strand, within DZA65_RS03890at 827.950 kb on + strand, within DZA65_RS03890at 827.950 kb on + strand, within DZA65_RS03890at 827.972 kb on + strand, within DZA65_RS03890at 827.972 kb on + strand, within DZA65_RS03890at 827.972 kb on + strand, within DZA65_RS03890at 827.973 kb on - strand, within DZA65_RS03890at 827.973 kb on - strand, within DZA65_RS03890at 827.973 kb on - strand, within DZA65_RS03890at 827.996 kb on + strand, within DZA65_RS03890at 827.996 kb on + strand, within DZA65_RS03890at 828.141 kb on + strandat 828.141 kb on + strandat 828.141 kb on + strandat 828.141 kb on + strandat 828.141 kb on + strandat 828.141 kb on + strandat 828.141 kb on + strandat 828.141 kb on + strandat 828.141 kb on + strandat 828.141 kb on + strandat 828.142 kb on - strandat 828.142 kb on - strandat 828.142 kb on - strandat 828.142 kb on - strandat 828.142 kb on - strandat 828.142 kb on - strandat 828.142 kb on - strandat 828.142 kb on - strandat 828.280 kb on + strandat 828.280 kb on + strandat 828.280 kb on + strandat 828.280 kb on + strandat 828.280 kb on + strandat 828.280 kb on + strandat 828.280 kb on + strandat 828.280 kb on + strandat 828.281 kb on - strandat 828.281 kb on - strandat 828.281 kb on - strandat 828.284 kb on + strandat 828.284 kb on + strandat 828.284 kb on + strandat 828.284 kb on + strandat 828.284 kb on + strandat 828.284 kb on + strandat 828.284 kb on + strandat 828.284 kb on + strandat 828.285 kb on - strandat 828.285 kb on - strandat 828.285 kb on - strandat 828.285 kb on - strandat 828.330 kb on + strandat 828.331 kb on - strandat 828.331 kb on - strandat 828.366 kb on + strandat 828.369 kb on + strandat 828.369 kb on + strandat 828.369 kb on + strandat 828.370 kb on - strandat 828.507 kb on - strand, within DZA65_RS03895at 828.556 kb on + strand, within DZA65_RS03895at 828.743 kb on - strand, within DZA65_RS03895at 828.772 kb on + strand, within DZA65_RS03895at 828.813 kb on + strand, within DZA65_RS03895at 828.968 kb on + strand, within DZA65_RS03895at 828.968 kb on + strand, within DZA65_RS03895at 828.968 kb on + strand, within DZA65_RS03895at 828.968 kb on + strand, within DZA65_RS03895at 828.968 kb on + strand, within DZA65_RS03895at 828.968 kb on + strand, within DZA65_RS03895at 828.968 kb on + strand, within DZA65_RS03895at 828.968 kb on + strand, within DZA65_RS03895at 828.968 kb on + strand, within DZA65_RS03895at 828.968 kb on + strand, within DZA65_RS03895at 828.968 kb on + strand, within DZA65_RS03895at 828.969 kb on - strand, within DZA65_RS03895at 828.969 kb on - strand, within DZA65_RS03895at 828.969 kb on - strandat 828.969 kb on - strand, within DZA65_RS03895at 828.969 kb on - strand, within DZA65_RS03895at 828.969 kb on - strand, within DZA65_RS03895at 828.969 kb on - strand, within DZA65_RS03895at 828.969 kb on - strand, within DZA65_RS03895at 828.969 kb on - strand, within DZA65_RS03895at 828.969 kb on - strand, within DZA65_RS03895at 829.015 kb on + strand, within DZA65_RS03895at 829.017 kb on + strand, within DZA65_RS03895at 829.017 kb on + strand, within DZA65_RS03895at 829.018 kb on - strand, within DZA65_RS03895at 829.044 kb on - strand, within DZA65_RS03895at 829.044 kb on - strand, within DZA65_RS03895at 829.244 kb on - strandat 829.273 kb on + strandat 829.273 kb on + strandat 829.273 kb on + strandat 829.273 kb on + strandat 829.273 kb on + strandat 829.273 kb on + strandat 829.273 kb on + strandat 829.273 kb on + strandat 829.273 kb on + strandat 829.273 kb on + strandat 829.274 kb on - strandat 829.274 kb on - strandat 829.274 kb on - strandat 829.323 kb on - strandat 829.323 kb on - strandat 829.365 kb on + strand, within DZA65_RS03900at 829.365 kb on + strand, within DZA65_RS03900at 829.366 kb on - strand, within DZA65_RS03900at 829.366 kb on - strand, within DZA65_RS03900at 829.527 kb on + strand, within DZA65_RS03900at 829.527 kb on + strand, within DZA65_RS03900at 829.527 kb on + strand, within DZA65_RS03900at 829.527 kb on + strand, within DZA65_RS03900at 829.528 kb on - strand, within DZA65_RS03900at 829.528 kb on - strand, within DZA65_RS03900at 829.627 kb on + strand, within DZA65_RS03900at 829.671 kb on - strand, within DZA65_RS03900at 829.688 kb on + strand, within DZA65_RS03900at 829.688 kb on + strand, within DZA65_RS03900at 829.688 kb on + strand, within DZA65_RS03900at 829.689 kb on - strand, within DZA65_RS03900at 829.740 kb on + strand, within DZA65_RS03900at 829.740 kb on + strand, within DZA65_RS03900at 829.741 kb on - strand, within DZA65_RS03900at 829.741 kb on - strand, within DZA65_RS03900at 829.741 kb on - strand, within DZA65_RS03900at 829.741 kb on - strand, within DZA65_RS03900at 829.767 kb on + strand, within DZA65_RS03900at 829.812 kb on + strand, within DZA65_RS03900at 829.812 kb on + strand, within DZA65_RS03900at 829.812 kb on + strand, within DZA65_RS03900at 829.812 kb on + strand, within DZA65_RS03900at 829.812 kb on + strand, within DZA65_RS03900at 829.813 kb on - strand, within DZA65_RS03900at 829.813 kb on - strand, within DZA65_RS03900at 829.827 kb on + strand, within DZA65_RS03900at 829.827 kb on + strand, within DZA65_RS03900at 829.827 kb on + strand, within DZA65_RS03900at 829.827 kb on + strand, within DZA65_RS03900at 829.827 kb on + strand, within DZA65_RS03900at 829.827 kb on + strand, within DZA65_RS03900at 829.827 kb on + strand, within DZA65_RS03900at 829.827 kb on + strand, within DZA65_RS03900at 829.827 kb on + strand, within DZA65_RS03900at 829.828 kb on - strandat 829.828 kb on - strand, within DZA65_RS03900at 829.828 kb on - strand, within DZA65_RS03900at 829.828 kb on - strand, within DZA65_RS03900at 829.828 kb on - strand, within DZA65_RS03900at 829.830 kb on + strand, within DZA65_RS03900at 829.830 kb on + strand, within DZA65_RS03900at 829.830 kb on + strand, within DZA65_RS03900at 829.830 kb on + strand, within DZA65_RS03900at 829.831 kb on - strand, within DZA65_RS03900at 829.831 kb on - strand, within DZA65_RS03900at 829.875 kb on + strand, within DZA65_RS03900at 829.875 kb on + strand, within DZA65_RS03900at 829.876 kb on - strand, within DZA65_RS03900at 829.914 kb on + strand, within DZA65_RS03900at 829.914 kb on + strand, within DZA65_RS03900at 829.914 kb on + strand, within DZA65_RS03900at 829.915 kb on - strand, within DZA65_RS03900at 829.983 kb on + strand, within DZA65_RS03900at 829.983 kb on + strand, within DZA65_RS03900at 829.983 kb on + strand, within DZA65_RS03900at 829.983 kb on + strand, within DZA65_RS03900at 829.983 kb on + strand, within DZA65_RS03900at 829.983 kb on + strand, within DZA65_RS03900at 829.983 kb on + strand, within DZA65_RS03900at 829.984 kb on - strand, within DZA65_RS03900at 829.984 kb on - strand, within DZA65_RS03900at 829.984 kb on - strand, within DZA65_RS03900at 829.986 kb on + strand, within DZA65_RS03900at 829.986 kb on + strand, within DZA65_RS03900at 829.986 kb on + strand, within DZA65_RS03900at 829.986 kb on + strand, within DZA65_RS03900at 829.986 kb on + strand, within DZA65_RS03900at 829.987 kb on - strandat 829.987 kb on - strand, within DZA65_RS03900at 829.987 kb on - strand, within DZA65_RS03900at 829.987 kb on - strand, within DZA65_RS03900at 830.027 kb on + strandat 830.028 kb on - strandat 830.067 kb on + strandat 830.098 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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827,362 + DZA65_RS03890 0.51 +0.1
827,362 + DZA65_RS03890 0.51 -0.6
827,362 + DZA65_RS03890 0.51 +0.6
827,363 - DZA65_RS03890 0.51 -0.6
827,366 + DZA65_RS03890 0.51 +0.8
827,366 + DZA65_RS03890 0.51 -0.9
827,366 + DZA65_RS03890 0.51 +0.1
827,366 + DZA65_RS03890 0.51 +0.6
827,366 + DZA65_RS03890 0.51 +0.3
827,366 + DZA65_RS03890 0.51 +0.7
827,366 + DZA65_RS03890 0.51 +0.2
827,366 + DZA65_RS03890 0.51 +0.4
827,366 + DZA65_RS03890 0.51 +0.9
827,366 + DZA65_RS03890 0.51 +1.4
827,366 + DZA65_RS03890 0.51 -0.6
827,366 + DZA65_RS03890 0.51 -0.5
827,367 - DZA65_RS03890 0.51 -0.3
827,367 - DZA65_RS03890 0.51 -0.3
827,367 - DZA65_RS03890 0.51 -1.2
827,367 - DZA65_RS03890 0.51 +0.3
827,367 - DZA65_RS03890 0.51 -2.2
827,367 - DZA65_RS03890 0.51 -0.0
827,367 - DZA65_RS03890 0.51 -0.3
827,367 - DZA65_RS03890 0.51 +0.0
827,367 - DZA65_RS03890 0.51 +0.4
827,655 + DZA65_RS03890 0.66 +1.0
827,655 + -0.6
827,656 - DZA65_RS03890 0.66 -1.7
827,656 - DZA65_RS03890 0.66 -0.2
827,658 + DZA65_RS03890 0.66 -0.1
827,658 + DZA65_RS03890 0.66 +0.6
827,658 + DZA65_RS03890 0.66 +0.2
827,692 + -0.6
827,693 - DZA65_RS03890 0.68 -0.4
827,693 - DZA65_RS03890 0.68 -0.7
827,891 + DZA65_RS03890 0.78 +0.5
827,892 - DZA65_RS03890 0.78 +0.6
827,892 - DZA65_RS03890 0.78 +0.1
827,950 + DZA65_RS03890 0.81 +0.5
827,950 + DZA65_RS03890 0.81 -2.3
827,972 + DZA65_RS03890 0.82 +0.3
827,972 + DZA65_RS03890 0.82 +0.7
827,972 + DZA65_RS03890 0.82 -0.2
827,973 - DZA65_RS03890 0.82 +0.4
827,973 - DZA65_RS03890 0.82 -0.1
827,973 - DZA65_RS03890 0.82 +1.2
827,996 + DZA65_RS03890 0.83 -1.2
827,996 + DZA65_RS03890 0.83 +0.1
828,141 + +0.2
828,141 + +1.1
828,141 + -0.3
828,141 + +1.5
828,141 + +0.4
828,141 + -0.3
828,141 + -1.0
828,141 + -2.2
828,141 + -0.8
828,141 + -1.0
828,142 - -0.8
828,142 - -0.2
828,142 - +0.0
828,142 - +1.6
828,142 - +0.3
828,142 - +0.4
828,142 - -2.0
828,142 - +0.4
828,280 + +0.8
828,280 + +0.4
828,280 + -0.2
828,280 + -0.2
828,280 + -1.2
828,280 + -0.2
828,280 + +0.3
828,280 + +2.6
828,281 - +2.2
828,281 - +0.4
828,281 - -0.8
828,284 + +0.0
828,284 + -0.1
828,284 + -1.6
828,284 + -0.9
828,284 + -0.2
828,284 + +0.4
828,284 + -1.8
828,284 + -0.3
828,285 - -1.2
828,285 - +0.0
828,285 - -1.2
828,285 - +0.8
828,330 + -0.3
828,331 - +0.2
828,331 - +0.3
828,366 + -1.6
828,369 + +0.4
828,369 + +0.7
828,369 + -1.6
828,370 - -0.1
828,507 - DZA65_RS03895 0.18 -0.7
828,556 + DZA65_RS03895 0.23 +0.7
828,743 - DZA65_RS03895 0.44 -0.6
828,772 + DZA65_RS03895 0.47 +3.0
828,813 + DZA65_RS03895 0.52 +0.7
828,968 + DZA65_RS03895 0.69 +0.6
828,968 + DZA65_RS03895 0.69 +0.4
828,968 + DZA65_RS03895 0.69 -1.2
828,968 + DZA65_RS03895 0.69 +0.6
828,968 + DZA65_RS03895 0.69 +1.1
828,968 + DZA65_RS03895 0.69 -0.3
828,968 + DZA65_RS03895 0.69 -0.6
828,968 + DZA65_RS03895 0.69 +0.2
828,968 + DZA65_RS03895 0.69 +0.2
828,968 + DZA65_RS03895 0.69 +0.7
828,968 + DZA65_RS03895 0.69 -1.6
828,969 - DZA65_RS03895 0.70 -1.2
828,969 - DZA65_RS03895 0.70 +0.4
828,969 - +2.0
828,969 - DZA65_RS03895 0.70 +1.2
828,969 - DZA65_RS03895 0.70 +2.1
828,969 - DZA65_RS03895 0.70 +1.2
828,969 - DZA65_RS03895 0.70 -0.3
828,969 - DZA65_RS03895 0.70 +1.2
828,969 - DZA65_RS03895 0.70 +1.3
828,969 - DZA65_RS03895 0.70 +0.5
829,015 + DZA65_RS03895 0.75 +0.3
829,017 + DZA65_RS03895 0.75 +1.1
829,017 + DZA65_RS03895 0.75 +1.6
829,018 - DZA65_RS03895 0.75 +0.5
829,044 - DZA65_RS03895 0.78 -0.6
829,044 - DZA65_RS03895 0.78 +0.1
829,244 - +0.4
829,273 + +0.4
829,273 + +0.4
829,273 + +0.4
829,273 + -0.4
829,273 + -0.7
829,273 + +1.9
829,273 + +0.2
829,273 + -0.8
829,273 + -1.8
829,273 + -0.2
829,274 - -1.9
829,274 - -0.8
829,274 - +0.6
829,323 - -0.6
829,323 - +0.0
829,365 + DZA65_RS03900 0.12 -2.4
829,365 + DZA65_RS03900 0.12 +0.0
829,366 - DZA65_RS03900 0.12 -0.0
829,366 - DZA65_RS03900 0.12 +0.4
829,527 + DZA65_RS03900 0.32 +1.0
829,527 + DZA65_RS03900 0.32 +0.2
829,527 + DZA65_RS03900 0.32 +0.2
829,527 + DZA65_RS03900 0.32 +0.2
829,528 - DZA65_RS03900 0.32 -0.6
829,528 - DZA65_RS03900 0.32 +1.2
829,627 + DZA65_RS03900 0.44 +0.6
829,671 - DZA65_RS03900 0.49 -0.3
829,688 + DZA65_RS03900 0.51 +1.1
829,688 + DZA65_RS03900 0.51 -1.8
829,688 + DZA65_RS03900 0.51 +0.0
829,689 - DZA65_RS03900 0.51 +0.2
829,740 + DZA65_RS03900 0.58 -0.9
829,740 + DZA65_RS03900 0.58 -0.3
829,741 - DZA65_RS03900 0.58 +0.1
829,741 - DZA65_RS03900 0.58 +3.3
829,741 - DZA65_RS03900 0.58 +0.6
829,741 - DZA65_RS03900 0.58 -0.8
829,767 + DZA65_RS03900 0.61 -2.2
829,812 + DZA65_RS03900 0.66 +0.0
829,812 + DZA65_RS03900 0.66 -1.4
829,812 + DZA65_RS03900 0.66 -0.1
829,812 + DZA65_RS03900 0.66 +1.2
829,812 + DZA65_RS03900 0.66 +0.3
829,813 - DZA65_RS03900 0.66 +0.1
829,813 - DZA65_RS03900 0.66 +0.4
829,827 + DZA65_RS03900 0.68 +0.4
829,827 + DZA65_RS03900 0.68 +0.5
829,827 + DZA65_RS03900 0.68 +0.4
829,827 + DZA65_RS03900 0.68 +0.3
829,827 + DZA65_RS03900 0.68 +0.4
829,827 + DZA65_RS03900 0.68 +0.1
829,827 + DZA65_RS03900 0.68 -0.1
829,827 + DZA65_RS03900 0.68 -0.5
829,827 + DZA65_RS03900 0.68 +0.3
829,828 - +1.4
829,828 - DZA65_RS03900 0.68 -1.8
829,828 - DZA65_RS03900 0.68 +0.4
829,828 - DZA65_RS03900 0.68 +0.4
829,828 - DZA65_RS03900 0.68 -0.2
829,830 + DZA65_RS03900 0.68 +0.4
829,830 + DZA65_RS03900 0.68 +0.8
829,830 + DZA65_RS03900 0.68 -0.6
829,830 + DZA65_RS03900 0.68 +0.1
829,831 - DZA65_RS03900 0.69 -0.3
829,831 - DZA65_RS03900 0.69 +0.2
829,875 + DZA65_RS03900 0.74 -2.8
829,875 + DZA65_RS03900 0.74 +0.2
829,876 - DZA65_RS03900 0.74 +0.4
829,914 + DZA65_RS03900 0.79 +0.2
829,914 + DZA65_RS03900 0.79 -0.2
829,914 + DZA65_RS03900 0.79 -0.4
829,915 - DZA65_RS03900 0.79 -0.1
829,983 + DZA65_RS03900 0.87 +0.2
829,983 + DZA65_RS03900 0.87 +0.1
829,983 + DZA65_RS03900 0.87 +0.3
829,983 + DZA65_RS03900 0.87 +0.6
829,983 + DZA65_RS03900 0.87 -0.3
829,983 + DZA65_RS03900 0.87 +1.0
829,983 + DZA65_RS03900 0.87 -0.5
829,984 - DZA65_RS03900 0.87 +0.0
829,984 - DZA65_RS03900 0.87 +0.1
829,984 - DZA65_RS03900 0.87 +1.0
829,986 + DZA65_RS03900 0.87 +1.0
829,986 + DZA65_RS03900 0.87 -3.4
829,986 + DZA65_RS03900 0.87 -1.0
829,986 + DZA65_RS03900 0.87 +0.6
829,986 + DZA65_RS03900 0.87 +0.4
829,987 - +0.8
829,987 - DZA65_RS03900 0.87 -0.8
829,987 - DZA65_RS03900 0.87 +2.0
829,987 - DZA65_RS03900 0.87 -0.8
830,027 + +1.4
830,028 - +0.6
830,067 + -0.2
830,098 - -0.2

Or see this region's nucleotide sequence