Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03180 and DZA65_RS03185 are separated by 123 nucleotides DZA65_RS03185 and DZA65_RS03190 are separated by 157 nucleotides DZA65_RS03190 and DZA65_RS03195 are separated by 47 nucleotides
DZA65_RS03180: DZA65_RS03180 - transcription elongation factor GreA, at 675,742 to 676,218
_RS03180
DZA65_RS03185: DZA65_RS03185 - ribosome assembly RNA-binding protein YhbY, at 676,342 to 676,635
_RS03185
DZA65_RS03190: DZA65_RS03190 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE, at 676,793 to 677,422
_RS03190
DZA65_RS03195: DZA65_RS03195 - ATP-dependent zinc metalloprotease FtsH, at 677,470 to 679,422
_RS03195
Position (kb) 676
677
678 Strain fitness (log2 ratio) -2
-1
0
1
2 at 675.828 kb on + strand, within DZA65_RS03180 at 675.828 kb on + strand, within DZA65_RS03180 at 675.883 kb on + strand, within DZA65_RS03180 at 675.883 kb on + strand, within DZA65_RS03180 at 675.883 kb on + strand, within DZA65_RS03180 at 675.884 kb on - strand, within DZA65_RS03180 at 675.884 kb on - strand, within DZA65_RS03180 at 675.964 kb on - strand, within DZA65_RS03180 at 676.012 kb on - strand, within DZA65_RS03180 at 676.054 kb on + strand, within DZA65_RS03180 at 676.054 kb on + strand, within DZA65_RS03180 at 676.055 kb on - strand, within DZA65_RS03180 at 676.055 kb on - strand, within DZA65_RS03180 at 676.059 kb on + strand, within DZA65_RS03180 at 676.098 kb on + strand, within DZA65_RS03180 at 676.098 kb on + strand, within DZA65_RS03180 at 676.098 kb on + strand, within DZA65_RS03180 at 676.099 kb on - strand, within DZA65_RS03180 at 676.099 kb on - strand, within DZA65_RS03180 at 676.099 kb on - strand, within DZA65_RS03180 at 676.099 kb on - strand, within DZA65_RS03180 at 676.099 kb on - strand, within DZA65_RS03180 at 676.099 kb on - strand, within DZA65_RS03180 at 676.133 kb on + strand, within DZA65_RS03180 at 676.184 kb on + strand at 676.184 kb on + strand at 676.185 kb on - strand at 676.185 kb on - strand at 676.210 kb on + strand at 676.211 kb on - strand at 676.211 kb on - strand at 676.251 kb on + strand at 676.251 kb on + strand at 676.279 kb on + strand at 676.383 kb on - strand, within DZA65_RS03185 at 676.535 kb on - strand, within DZA65_RS03185 at 676.535 kb on - strand, within DZA65_RS03185 at 676.535 kb on - strand, within DZA65_RS03185 at 676.623 kb on + strand at 676.676 kb on + strand at 676.693 kb on + strand at 676.693 kb on + strand at 676.754 kb on + strand at 676.754 kb on + strand at 676.754 kb on + strand at 676.754 kb on + strand at 676.754 kb on + strand at 676.754 kb on + strand at 676.758 kb on + strand at 676.758 kb on + strand at 676.758 kb on + strand at 676.758 kb on + strand at 676.764 kb on + strand at 676.764 kb on + strand at 676.779 kb on + strand at 677.420 kb on + strand at 677.420 kb on + strand at 677.420 kb on + strand at 677.423 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 675,828 + DZA65_RS03180 0.18 -0.1 675,828 + DZA65_RS03180 0.18 +0.9 675,883 + DZA65_RS03180 0.30 +0.4 675,883 + DZA65_RS03180 0.30 -1.1 675,883 + DZA65_RS03180 0.30 -2.1 675,884 - DZA65_RS03180 0.30 -0.0 675,884 - DZA65_RS03180 0.30 -0.8 675,964 - DZA65_RS03180 0.47 +0.2 676,012 - DZA65_RS03180 0.57 -0.6 676,054 + DZA65_RS03180 0.65 +0.1 676,054 + DZA65_RS03180 0.65 +0.6 676,055 - DZA65_RS03180 0.66 +0.3 676,055 - DZA65_RS03180 0.66 +1.1 676,059 + DZA65_RS03180 0.66 -0.8 676,098 + DZA65_RS03180 0.75 -0.6 676,098 + DZA65_RS03180 0.75 -0.5 676,098 + DZA65_RS03180 0.75 -1.0 676,099 - DZA65_RS03180 0.75 +1.6 676,099 - DZA65_RS03180 0.75 +1.2 676,099 - DZA65_RS03180 0.75 +0.4 676,099 - DZA65_RS03180 0.75 -0.0 676,099 - DZA65_RS03180 0.75 -2.1 676,099 - DZA65_RS03180 0.75 -1.0 676,133 + DZA65_RS03180 0.82 +0.4 676,184 + +0.2 676,184 + -0.1 676,185 - +1.4 676,185 - -0.3 676,210 + +1.0 676,211 - -0.6 676,211 - -0.6 676,251 + +0.1 676,251 + -0.4 676,279 + -0.6 676,383 - DZA65_RS03185 0.14 -0.5 676,535 - DZA65_RS03185 0.66 +0.4 676,535 - DZA65_RS03185 0.66 +2.0 676,535 - DZA65_RS03185 0.66 -0.6 676,623 + +1.6 676,676 + +0.2 676,693 + +0.5 676,693 + +0.0 676,754 + -2.2 676,754 + +1.9 676,754 + +0.1 676,754 + -1.1 676,754 + +1.2 676,754 + +0.6 676,758 + -0.7 676,758 + -0.5 676,758 + +2.0 676,758 + -0.3 676,764 + +0.8 676,764 + -0.4 676,779 + +1.0 677,420 + -2.7 677,420 + -0.9 677,420 + -0.7 677,423 + -1.1
Or see this region's nucleotide sequence