Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02945 and DZA65_RS02950 are separated by 360 nucleotides DZA65_RS02950 and DZA65_RS02965 are separated by 556 nucleotides
DZA65_RS02945: DZA65_RS02945 - transcriptional regulator ExuR, at 629,057 to 629,836
_RS02945
DZA65_RS02950: DZA65_RS02950 - MFS transporter, at 630,197 to 631,498
_RS02950
DZA65_RS02965: DZA65_RS02965 - glucuronate isomerase, at 632,055 to 633,473
_RS02965
Position (kb) 630
631
632 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 629.288 kb on - strand, within DZA65_RS02945 at 629.390 kb on + strand, within DZA65_RS02945 at 629.390 kb on + strand, within DZA65_RS02945 at 629.390 kb on + strand, within DZA65_RS02945 at 629.391 kb on - strand, within DZA65_RS02945 at 629.522 kb on + strand, within DZA65_RS02945 at 629.808 kb on + strand at 629.849 kb on + strand at 629.849 kb on + strand at 629.849 kb on + strand at 629.850 kb on - strand at 629.854 kb on + strand at 629.855 kb on - strand at 629.892 kb on + strand at 629.893 kb on - strand at 629.893 kb on - strand at 629.919 kb on + strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.922 kb on - strand at 629.922 kb on - strand at 629.922 kb on - strand at 629.922 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 630.041 kb on + strand at 630.042 kb on - strand at 630.043 kb on + strand at 630.043 kb on + strand at 630.043 kb on + strand at 630.044 kb on - strand at 630.044 kb on - strand at 630.044 kb on - strand at 630.044 kb on - strand at 630.044 kb on - strand at 630.061 kb on - strand at 630.061 kb on - strand at 630.070 kb on - strand at 630.070 kb on - strand at 630.072 kb on - strand at 630.072 kb on - strand at 630.072 kb on - strand at 630.112 kb on + strand at 630.112 kb on + strand at 630.112 kb on + strand at 630.112 kb on + strand at 630.112 kb on + strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.152 kb on - strand at 630.156 kb on + strand at 630.305 kb on - strand at 630.329 kb on - strand, within DZA65_RS02950 at 630.329 kb on - strand, within DZA65_RS02950 at 630.340 kb on + strand, within DZA65_RS02950 at 630.356 kb on + strand, within DZA65_RS02950 at 630.356 kb on + strand, within DZA65_RS02950 at 630.356 kb on + strand, within DZA65_RS02950 at 630.356 kb on + strand, within DZA65_RS02950 at 630.357 kb on - strand, within DZA65_RS02950 at 630.357 kb on - strand, within DZA65_RS02950 at 630.357 kb on - strand, within DZA65_RS02950 at 630.359 kb on + strand, within DZA65_RS02950 at 630.360 kb on - strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.523 kb on - strand, within DZA65_RS02950 at 630.523 kb on - strand, within DZA65_RS02950 at 630.557 kb on + strand, within DZA65_RS02950 at 630.557 kb on + strand, within DZA65_RS02950 at 630.558 kb on - strand, within DZA65_RS02950 at 630.558 kb on - strand, within DZA65_RS02950 at 630.621 kb on + strand, within DZA65_RS02950 at 630.621 kb on + strand, within DZA65_RS02950 at 630.621 kb on + strand, within DZA65_RS02950 at 630.645 kb on + strand, within DZA65_RS02950 at 630.645 kb on + strand, within DZA65_RS02950 at 630.645 kb on + strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.719 kb on - strand, within DZA65_RS02950 at 630.726 kb on + strand, within DZA65_RS02950 at 630.726 kb on + strand, within DZA65_RS02950 at 630.727 kb on - strand, within DZA65_RS02950 at 630.727 kb on - strand, within DZA65_RS02950 at 630.727 kb on - strand, within DZA65_RS02950 at 630.897 kb on + strand, within DZA65_RS02950 at 630.897 kb on + strand, within DZA65_RS02950 at 630.897 kb on + strand, within DZA65_RS02950 at 630.897 kb on + strand, within DZA65_RS02950 at 630.898 kb on - strand, within DZA65_RS02950 at 630.898 kb on - strand, within DZA65_RS02950 at 630.898 kb on - strand, within DZA65_RS02950 at 630.946 kb on - strand, within DZA65_RS02950 at 630.946 kb on - strand, within DZA65_RS02950 at 630.946 kb on - strand, within DZA65_RS02950 at 630.951 kb on + strand, within DZA65_RS02950 at 630.951 kb on + strand, within DZA65_RS02950 at 630.951 kb on + strand, within DZA65_RS02950 at 631.086 kb on + strand, within DZA65_RS02950 at 631.086 kb on + strand, within DZA65_RS02950 at 631.087 kb on - strand, within DZA65_RS02950 at 631.087 kb on - strand, within DZA65_RS02950 at 631.288 kb on + strand, within DZA65_RS02950 at 631.289 kb on - strand, within DZA65_RS02950 at 631.289 kb on - strand, within DZA65_RS02950 at 631.299 kb on + strand, within DZA65_RS02950 at 631.299 kb on + strand, within DZA65_RS02950 at 631.300 kb on - strand, within DZA65_RS02950 at 631.300 kb on - strand, within DZA65_RS02950 at 631.318 kb on + strand, within DZA65_RS02950 at 631.326 kb on + strand, within DZA65_RS02950 at 631.326 kb on + strand, within DZA65_RS02950 at 631.339 kb on - strand, within DZA65_RS02950 at 631.351 kb on + strand, within DZA65_RS02950 at 631.351 kb on + strand, within DZA65_RS02950 at 631.351 kb on + strand, within DZA65_RS02950 at 631.351 kb on + strand, within DZA65_RS02950 at 631.351 kb on + strand, within DZA65_RS02950 at 631.351 kb on + strand, within DZA65_RS02950 at 631.351 kb on + strand, within DZA65_RS02950 at 631.352 kb on - strand, within DZA65_RS02950 at 631.352 kb on - strand, within DZA65_RS02950 at 631.352 kb on - strand, within DZA65_RS02950 at 631.352 kb on - strand, within DZA65_RS02950 at 631.352 kb on - strand, within DZA65_RS02950 at 631.352 kb on - strand, within DZA65_RS02950 at 631.352 kb on - strand, within DZA65_RS02950 at 631.352 kb on - strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.359 kb on + strand, within DZA65_RS02950 at 631.359 kb on + strand, within DZA65_RS02950 at 631.359 kb on + strand, within DZA65_RS02950 at 631.360 kb on - strand, within DZA65_RS02950 at 631.360 kb on - strand, within DZA65_RS02950 at 631.360 kb on - strand, within DZA65_RS02950 at 631.360 kb on - strand, within DZA65_RS02950 at 631.502 kb on - strand at 631.519 kb on + strand at 631.519 kb on + strand at 631.523 kb on + strand at 631.557 kb on + strand at 631.558 kb on - strand at 631.558 kb on - strand at 631.563 kb on + strand at 631.563 kb on + strand at 631.563 kb on + strand at 631.563 kb on + strand at 631.563 kb on + strand at 631.563 kb on + strand at 631.563 kb on + strand at 631.564 kb on - strand at 631.752 kb on + strand at 632.014 kb on + strand at 632.038 kb on - strand at 632.038 kb on - strand at 632.068 kb on + strand at 632.113 kb on - strand at 632.148 kb on + strand at 632.188 kb on - strand at 632.206 kb on - strand, within DZA65_RS02965 at 632.336 kb on + strand, within DZA65_RS02965 at 632.336 kb on + strand, within DZA65_RS02965 at 632.337 kb on - strand, within DZA65_RS02965 at 632.337 kb on - strand, within DZA65_RS02965 at 632.355 kb on + strand, within DZA65_RS02965 at 632.356 kb on - strand, within DZA65_RS02965 at 632.356 kb on - strand, within DZA65_RS02965
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 629,288 - DZA65_RS02945 0.30 -0.5 629,390 + DZA65_RS02945 0.43 -0.1 629,390 + DZA65_RS02945 0.43 -1.1 629,390 + DZA65_RS02945 0.43 -1.6 629,391 - DZA65_RS02945 0.43 -2.4 629,522 + DZA65_RS02945 0.60 -2.1 629,808 + -1.1 629,849 + +3.0 629,849 + -0.4 629,849 + -1.2 629,850 - -2.5 629,854 + -1.1 629,855 - -1.3 629,892 + +1.3 629,893 - +0.3 629,893 - -0.4 629,919 + -1.7 629,920 - -0.9 629,920 - +1.0 629,920 - -0.5 629,920 - -0.2 629,920 - -2.1 629,920 - -1.1 629,920 - +0.9 629,920 - +0.9 629,920 - +0.6 629,920 - -0.2 629,920 - -2.5 629,922 - -0.3 629,922 - +1.5 629,922 - -0.9 629,922 - +0.3 629,931 - +0.5 629,931 - -0.1 629,931 - -0.5 629,931 - -1.0 629,931 - +1.0 629,931 - -1.3 629,931 - -0.8 629,931 - -0.1 629,931 - +1.7 630,041 + -1.1 630,042 - +0.8 630,043 + +1.0 630,043 + +0.5 630,043 + +0.2 630,044 - +0.5 630,044 - +1.0 630,044 - -1.5 630,044 - -0.4 630,044 - +0.2 630,061 - +0.5 630,061 - +1.5 630,070 - -0.7 630,070 - -1.5 630,072 - +0.9 630,072 - +0.6 630,072 - +0.5 630,112 + -0.7 630,112 + -0.3 630,112 + +0.1 630,112 + -0.5 630,112 + -0.0 630,113 - -0.0 630,113 - +1.2 630,113 - +0.5 630,113 - -1.2 630,113 - -0.5 630,113 - -0.7 630,113 - -1.7 630,113 - +0.3 630,113 - +0.5 630,113 - -0.4 630,113 - +0.5 630,152 - -0.1 630,156 + +0.1 630,305 - +0.2 630,329 - DZA65_RS02950 0.10 -0.9 630,329 - DZA65_RS02950 0.10 +1.5 630,340 + DZA65_RS02950 0.11 -0.2 630,356 + DZA65_RS02950 0.12 -1.5 630,356 + DZA65_RS02950 0.12 -1.9 630,356 + DZA65_RS02950 0.12 -0.8 630,356 + DZA65_RS02950 0.12 +0.7 630,357 - DZA65_RS02950 0.12 +1.5 630,357 - DZA65_RS02950 0.12 -1.0 630,357 - DZA65_RS02950 0.12 -2.5 630,359 + DZA65_RS02950 0.12 -0.3 630,360 - DZA65_RS02950 0.13 +0.7 630,522 + DZA65_RS02950 0.25 +0.8 630,522 + DZA65_RS02950 0.25 -1.1 630,522 + DZA65_RS02950 0.25 -0.3 630,522 + DZA65_RS02950 0.25 +0.2 630,522 + DZA65_RS02950 0.25 -0.5 630,522 + DZA65_RS02950 0.25 +0.1 630,523 - DZA65_RS02950 0.25 -0.4 630,523 - DZA65_RS02950 0.25 -0.4 630,557 + DZA65_RS02950 0.28 -2.9 630,557 + DZA65_RS02950 0.28 +1.2 630,558 - DZA65_RS02950 0.28 +0.7 630,558 - DZA65_RS02950 0.28 -0.2 630,621 + DZA65_RS02950 0.33 -0.7 630,621 + DZA65_RS02950 0.33 -0.5 630,621 + DZA65_RS02950 0.33 +0.2 630,645 + DZA65_RS02950 0.34 -0.5 630,645 + DZA65_RS02950 0.34 +0.3 630,645 + DZA65_RS02950 0.34 +1.0 630,646 - DZA65_RS02950 0.34 -1.1 630,646 - DZA65_RS02950 0.34 -0.8 630,646 - DZA65_RS02950 0.34 -1.4 630,646 - DZA65_RS02950 0.34 -0.5 630,646 - DZA65_RS02950 0.34 +0.5 630,719 - DZA65_RS02950 0.40 -1.2 630,726 + DZA65_RS02950 0.41 -0.5 630,726 + DZA65_RS02950 0.41 -0.2 630,727 - DZA65_RS02950 0.41 -1.2 630,727 - DZA65_RS02950 0.41 +0.3 630,727 - DZA65_RS02950 0.41 +0.3 630,897 + DZA65_RS02950 0.54 +1.5 630,897 + DZA65_RS02950 0.54 -0.5 630,897 + DZA65_RS02950 0.54 +1.0 630,897 + DZA65_RS02950 0.54 +0.5 630,898 - DZA65_RS02950 0.54 +0.6 630,898 - DZA65_RS02950 0.54 -0.1 630,898 - DZA65_RS02950 0.54 -1.1 630,946 - DZA65_RS02950 0.58 +1.1 630,946 - DZA65_RS02950 0.58 -0.0 630,946 - DZA65_RS02950 0.58 +0.3 630,951 + DZA65_RS02950 0.58 +1.8 630,951 + DZA65_RS02950 0.58 +0.4 630,951 + DZA65_RS02950 0.58 +0.0 631,086 + DZA65_RS02950 0.68 +0.6 631,086 + DZA65_RS02950 0.68 +0.8 631,087 - DZA65_RS02950 0.68 +1.7 631,087 - DZA65_RS02950 0.68 +1.2 631,288 + DZA65_RS02950 0.84 -2.0 631,289 - DZA65_RS02950 0.84 -0.5 631,289 - DZA65_RS02950 0.84 +0.6 631,299 + DZA65_RS02950 0.85 -0.4 631,299 + DZA65_RS02950 0.85 -1.1 631,300 - DZA65_RS02950 0.85 +0.9 631,300 - DZA65_RS02950 0.85 +1.6 631,318 + DZA65_RS02950 0.86 -0.8 631,326 + DZA65_RS02950 0.87 -0.4 631,326 + DZA65_RS02950 0.87 +1.1 631,339 - DZA65_RS02950 0.88 +0.7 631,351 + DZA65_RS02950 0.89 -0.7 631,351 + DZA65_RS02950 0.89 +0.9 631,351 + DZA65_RS02950 0.89 +0.6 631,351 + DZA65_RS02950 0.89 -0.8 631,351 + DZA65_RS02950 0.89 +0.1 631,351 + DZA65_RS02950 0.89 -1.1 631,351 + DZA65_RS02950 0.89 +1.3 631,352 - DZA65_RS02950 0.89 +0.9 631,352 - DZA65_RS02950 0.89 -0.5 631,352 - DZA65_RS02950 0.89 -1.2 631,352 - DZA65_RS02950 0.89 -3.1 631,352 - DZA65_RS02950 0.89 -1.1 631,352 - DZA65_RS02950 0.89 +0.0 631,352 - DZA65_RS02950 0.89 +0.3 631,352 - DZA65_RS02950 0.89 +0.5 631,353 + DZA65_RS02950 0.89 +0.7 631,353 + DZA65_RS02950 0.89 +0.1 631,353 + DZA65_RS02950 0.89 -1.5 631,353 + DZA65_RS02950 0.89 -0.5 631,353 + DZA65_RS02950 0.89 +0.2 631,353 + DZA65_RS02950 0.89 -0.4 631,353 + DZA65_RS02950 0.89 -1.1 631,353 + DZA65_RS02950 0.89 -0.5 631,353 + DZA65_RS02950 0.89 +0.3 631,353 + DZA65_RS02950 0.89 +1.2 631,353 + DZA65_RS02950 0.89 +0.9 631,353 + DZA65_RS02950 0.89 -0.9 631,353 + DZA65_RS02950 0.89 +0.5 631,353 + DZA65_RS02950 0.89 +2.2 631,353 + DZA65_RS02950 0.89 +2.3 631,353 + DZA65_RS02950 0.89 -0.3 631,353 + DZA65_RS02950 0.89 +0.9 631,353 + DZA65_RS02950 0.89 +0.0 631,353 + DZA65_RS02950 0.89 -0.5 631,353 + DZA65_RS02950 0.89 -1.2 631,353 + DZA65_RS02950 0.89 -1.4 631,354 - DZA65_RS02950 0.89 -0.5 631,354 - DZA65_RS02950 0.89 -1.2 631,354 - DZA65_RS02950 0.89 +0.2 631,354 - DZA65_RS02950 0.89 -1.3 631,354 - DZA65_RS02950 0.89 +0.5 631,354 - DZA65_RS02950 0.89 -0.5 631,354 - DZA65_RS02950 0.89 -0.3 631,354 - DZA65_RS02950 0.89 -0.2 631,354 - DZA65_RS02950 0.89 +0.2 631,354 - DZA65_RS02950 0.89 +2.5 631,354 - DZA65_RS02950 0.89 -0.3 631,354 - DZA65_RS02950 0.89 +2.5 631,354 - DZA65_RS02950 0.89 +0.2 631,354 - DZA65_RS02950 0.89 -0.3 631,354 - DZA65_RS02950 0.89 +0.5 631,354 - DZA65_RS02950 0.89 +0.5 631,354 - DZA65_RS02950 0.89 +1.5 631,354 - DZA65_RS02950 0.89 +0.6 631,354 - DZA65_RS02950 0.89 -0.5 631,354 - DZA65_RS02950 0.89 +1.1 631,354 - DZA65_RS02950 0.89 +0.5 631,354 - DZA65_RS02950 0.89 +0.7 631,354 - DZA65_RS02950 0.89 -0.3 631,354 - DZA65_RS02950 0.89 +0.7 631,354 - DZA65_RS02950 0.89 +0.0 631,354 - DZA65_RS02950 0.89 +1.3 631,354 - DZA65_RS02950 0.89 -2.9 631,359 + DZA65_RS02950 0.89 +0.1 631,359 + DZA65_RS02950 0.89 +1.2 631,359 + DZA65_RS02950 0.89 -1.3 631,360 - DZA65_RS02950 0.89 -1.7 631,360 - DZA65_RS02950 0.89 +0.0 631,360 - DZA65_RS02950 0.89 +2.2 631,360 - DZA65_RS02950 0.89 +0.0 631,502 - +0.4 631,519 + -0.1 631,519 + -3.0 631,523 + -0.9 631,557 + +0.5 631,558 - +2.0 631,558 - +1.5 631,563 + -0.5 631,563 + -0.8 631,563 + -0.8 631,563 + -0.3 631,563 + +0.4 631,563 + +2.0 631,563 + +0.8 631,564 - +1.7 631,752 + -0.1 632,014 + -0.1 632,038 - +0.1 632,038 - -0.5 632,068 + +0.9 632,113 - +0.9 632,148 + +0.5 632,188 - -1.9 632,206 - DZA65_RS02965 0.11 -0.8 632,336 + DZA65_RS02965 0.20 +0.2 632,336 + DZA65_RS02965 0.20 +0.8 632,337 - DZA65_RS02965 0.20 +0.5 632,337 - DZA65_RS02965 0.20 +0.0 632,355 + DZA65_RS02965 0.21 -1.4 632,356 - DZA65_RS02965 0.21 +1.5 632,356 - DZA65_RS02965 0.21 -0.3
Or see this region's nucleotide sequence