Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02330 and DZA65_RS02335 overlap by 4 nucleotides DZA65_RS02335 and DZA65_RS02340 are separated by 35 nucleotides DZA65_RS02340 and DZA65_RS02350 are separated by 396 nucleotides
DZA65_RS02330: DZA65_RS02330 - ABC transporter ATP-binding protein, at 503,404 to 504,381
_RS02330
DZA65_RS02335: DZA65_RS02335 - ABC transporter ATP-binding protein, at 504,378 to 505,241
_RS02335
DZA65_RS02340: DZA65_RS02340 - M20 family metallopeptidase, at 505,277 to 506,695
_RS02340
DZA65_RS02350: DZA65_RS02350 - LysR family transcriptional regulator, at 507,092 to 508,024
_RS02350
Position (kb) 505
506
507 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 504.314 kb on - strand at 504.314 kb on - strand at 504.314 kb on - strand at 504.314 kb on - strand at 504.314 kb on - strand at 504.420 kb on - strand at 504.420 kb on - strand at 504.437 kb on + strand at 504.437 kb on + strand at 504.437 kb on + strand at 504.438 kb on - strand at 504.524 kb on + strand, within DZA65_RS02335 at 504.525 kb on - strand, within DZA65_RS02335 at 504.529 kb on + strand, within DZA65_RS02335 at 504.529 kb on + strand, within DZA65_RS02335 at 504.529 kb on + strand, within DZA65_RS02335 at 504.530 kb on - strand, within DZA65_RS02335 at 504.530 kb on - strand, within DZA65_RS02335 at 504.530 kb on - strand, within DZA65_RS02335 at 504.530 kb on - strand, within DZA65_RS02335 at 504.530 kb on - strand, within DZA65_RS02335 at 504.539 kb on + strand, within DZA65_RS02335 at 504.724 kb on - strand, within DZA65_RS02335 at 504.809 kb on + strand, within DZA65_RS02335 at 504.809 kb on + strand, within DZA65_RS02335 at 504.809 kb on + strand, within DZA65_RS02335 at 504.809 kb on + strand, within DZA65_RS02335 at 504.809 kb on + strand, within DZA65_RS02335 at 504.809 kb on + strand, within DZA65_RS02335 at 504.810 kb on - strand, within DZA65_RS02335 at 504.986 kb on - strand, within DZA65_RS02335 at 505.041 kb on + strand, within DZA65_RS02335 at 505.041 kb on + strand, within DZA65_RS02335 at 505.042 kb on - strand, within DZA65_RS02335 at 505.042 kb on - strand, within DZA65_RS02335 at 505.042 kb on - strand, within DZA65_RS02335 at 505.058 kb on + strand, within DZA65_RS02335 at 505.077 kb on + strand, within DZA65_RS02335 at 505.077 kb on + strand, within DZA65_RS02335 at 505.078 kb on - strand, within DZA65_RS02335 at 505.078 kb on - strand, within DZA65_RS02335 at 505.145 kb on - strand, within DZA65_RS02335 at 505.145 kb on - strand, within DZA65_RS02335 at 505.167 kb on + strand at 505.167 kb on + strand at 505.167 kb on + strand at 505.168 kb on - strand at 505.168 kb on - strand at 505.168 kb on - strand at 505.168 kb on - strand at 505.239 kb on + strand at 505.240 kb on - strand at 505.313 kb on + strand at 505.409 kb on + strand at 505.516 kb on - strand, within DZA65_RS02340 at 505.516 kb on - strand, within DZA65_RS02340 at 505.547 kb on + strand, within DZA65_RS02340 at 505.547 kb on + strand, within DZA65_RS02340 at 505.547 kb on + strand, within DZA65_RS02340 at 505.548 kb on - strand, within DZA65_RS02340 at 505.548 kb on - strand, within DZA65_RS02340 at 505.548 kb on - strand at 505.563 kb on + strand, within DZA65_RS02340 at 505.563 kb on + strand, within DZA65_RS02340 at 505.563 kb on + strand, within DZA65_RS02340 at 505.563 kb on + strand, within DZA65_RS02340 at 505.563 kb on + strand, within DZA65_RS02340 at 505.563 kb on + strand, within DZA65_RS02340 at 505.564 kb on - strand, within DZA65_RS02340 at 505.564 kb on - strand, within DZA65_RS02340 at 505.564 kb on - strand, within DZA65_RS02340 at 505.564 kb on - strand, within DZA65_RS02340 at 505.564 kb on - strand, within DZA65_RS02340 at 505.564 kb on - strand, within DZA65_RS02340 at 505.564 kb on - strand, within DZA65_RS02340 at 505.564 kb on - strand, within DZA65_RS02340 at 505.564 kb on - strand, within DZA65_RS02340 at 505.564 kb on - strand, within DZA65_RS02340 at 505.638 kb on - strand, within DZA65_RS02340 at 505.638 kb on - strand, within DZA65_RS02340 at 505.660 kb on + strand, within DZA65_RS02340 at 505.660 kb on + strand, within DZA65_RS02340 at 505.661 kb on - strand, within DZA65_RS02340 at 505.661 kb on - strand, within DZA65_RS02340 at 505.661 kb on - strand, within DZA65_RS02340 at 505.661 kb on - strand, within DZA65_RS02340 at 505.661 kb on - strand, within DZA65_RS02340 at 505.675 kb on + strand, within DZA65_RS02340 at 505.675 kb on + strand, within DZA65_RS02340 at 505.676 kb on - strand, within DZA65_RS02340 at 505.731 kb on - strand, within DZA65_RS02340 at 505.731 kb on - strand, within DZA65_RS02340 at 505.792 kb on - strand, within DZA65_RS02340 at 505.802 kb on + strand, within DZA65_RS02340 at 505.875 kb on + strand, within DZA65_RS02340 at 505.875 kb on + strand, within DZA65_RS02340 at 505.876 kb on - strand, within DZA65_RS02340 at 505.896 kb on + strand, within DZA65_RS02340 at 505.896 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.273 kb on + strand, within DZA65_RS02340 at 506.273 kb on + strand, within DZA65_RS02340 at 506.273 kb on + strand, within DZA65_RS02340 at 506.273 kb on + strand, within DZA65_RS02340 at 506.273 kb on + strand, within DZA65_RS02340 at 506.274 kb on - strand, within DZA65_RS02340 at 506.431 kb on + strand, within DZA65_RS02340 at 506.432 kb on - strand, within DZA65_RS02340 at 506.467 kb on - strand, within DZA65_RS02340 at 506.572 kb on + strand at 506.708 kb on + strand at 506.708 kb on + strand at 506.709 kb on - strand at 506.718 kb on + strand at 506.719 kb on - strand at 506.719 kb on - strand at 506.719 kb on - strand at 506.719 kb on - strand at 506.719 kb on - strand at 506.747 kb on + strand at 506.747 kb on + strand at 506.747 kb on + strand at 506.748 kb on - strand at 506.748 kb on - strand at 506.748 kb on - strand at 506.748 kb on - strand at 506.748 kb on - strand at 506.758 kb on + strand at 506.758 kb on + strand at 506.758 kb on + strand at 506.759 kb on - strand at 506.759 kb on - strand at 506.759 kb on - strand at 506.848 kb on + strand at 506.853 kb on + strand at 506.979 kb on + strand at 506.979 kb on + strand at 506.979 kb on + strand at 506.979 kb on + strand at 506.980 kb on - strand at 506.980 kb on - strand at 506.980 kb on - strand at 506.980 kb on - strand at 506.980 kb on - strand at 506.980 kb on - strand at 506.986 kb on - strand at 507.075 kb on + strand at 507.075 kb on + strand at 507.086 kb on + strand at 507.086 kb on + strand at 507.086 kb on + strand at 507.086 kb on + strand at 507.086 kb on + strand at 507.087 kb on - strand at 507.087 kb on - strand at 507.087 kb on - strand at 507.097 kb on + strand at 507.097 kb on + strand at 507.097 kb on + strand at 507.098 kb on - strand at 507.098 kb on - strand at 507.118 kb on + strand at 507.118 kb on + strand at 507.118 kb on + strand at 507.119 kb on - strand at 507.119 kb on - strand at 507.119 kb on - strand at 507.134 kb on - strand at 507.277 kb on + strand, within DZA65_RS02350 at 507.277 kb on + strand, within DZA65_RS02350 at 507.278 kb on - strand, within DZA65_RS02350 at 507.278 kb on - strand, within DZA65_RS02350 at 507.278 kb on - strand, within DZA65_RS02350 at 507.278 kb on - strand, within DZA65_RS02350 at 507.278 kb on - strand, within DZA65_RS02350 at 507.304 kb on + strand, within DZA65_RS02350 at 507.458 kb on + strand, within DZA65_RS02350 at 507.596 kb on - strand, within DZA65_RS02350
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 504,314 - +0.3 504,314 - +0.5 504,314 - -0.2 504,314 - +1.3 504,314 - -0.5 504,420 - +1.5 504,420 - -1.8 504,437 + +1.8 504,437 + +0.1 504,437 + -0.5 504,438 - -1.8 504,524 + DZA65_RS02335 0.17 +0.0 504,525 - DZA65_RS02335 0.17 +0.4 504,529 + DZA65_RS02335 0.17 +0.5 504,529 + DZA65_RS02335 0.17 +0.8 504,529 + DZA65_RS02335 0.17 -2.1 504,530 - DZA65_RS02335 0.18 +0.4 504,530 - DZA65_RS02335 0.18 +0.8 504,530 - DZA65_RS02335 0.18 +1.1 504,530 - DZA65_RS02335 0.18 -0.0 504,530 - DZA65_RS02335 0.18 +0.5 504,539 + DZA65_RS02335 0.19 +3.8 504,724 - DZA65_RS02335 0.40 -0.1 504,809 + DZA65_RS02335 0.50 +0.8 504,809 + DZA65_RS02335 0.50 -0.5 504,809 + DZA65_RS02335 0.50 -0.3 504,809 + DZA65_RS02335 0.50 -0.1 504,809 + DZA65_RS02335 0.50 +0.6 504,809 + DZA65_RS02335 0.50 -0.5 504,810 - DZA65_RS02335 0.50 -0.3 504,986 - DZA65_RS02335 0.70 +1.3 505,041 + DZA65_RS02335 0.77 +0.2 505,041 + DZA65_RS02335 0.77 -0.1 505,042 - DZA65_RS02335 0.77 +0.3 505,042 - DZA65_RS02335 0.77 -0.5 505,042 - DZA65_RS02335 0.77 +0.3 505,058 + DZA65_RS02335 0.79 -0.7 505,077 + DZA65_RS02335 0.81 -0.3 505,077 + DZA65_RS02335 0.81 +0.3 505,078 - DZA65_RS02335 0.81 +0.1 505,078 - DZA65_RS02335 0.81 -1.4 505,145 - DZA65_RS02335 0.89 -0.1 505,145 - DZA65_RS02335 0.89 +0.7 505,167 + +0.0 505,167 + -0.5 505,167 + +1.0 505,168 - +0.2 505,168 - +1.0 505,168 - -0.2 505,168 - -0.1 505,239 + -1.7 505,240 - -0.5 505,313 + +1.0 505,409 + -0.4 505,516 - DZA65_RS02340 0.17 +0.3 505,516 - DZA65_RS02340 0.17 +2.1 505,547 + DZA65_RS02340 0.19 +1.6 505,547 + DZA65_RS02340 0.19 +0.2 505,547 + DZA65_RS02340 0.19 +0.3 505,548 - DZA65_RS02340 0.19 +0.2 505,548 - DZA65_RS02340 0.19 -0.9 505,548 - +0.5 505,563 + DZA65_RS02340 0.20 +0.7 505,563 + DZA65_RS02340 0.20 -0.1 505,563 + DZA65_RS02340 0.20 +1.5 505,563 + DZA65_RS02340 0.20 +1.8 505,563 + DZA65_RS02340 0.20 +0.3 505,563 + DZA65_RS02340 0.20 -0.6 505,564 - DZA65_RS02340 0.20 -0.5 505,564 - DZA65_RS02340 0.20 +0.8 505,564 - DZA65_RS02340 0.20 +0.2 505,564 - DZA65_RS02340 0.20 +2.2 505,564 - DZA65_RS02340 0.20 +0.8 505,564 - DZA65_RS02340 0.20 +0.9 505,564 - DZA65_RS02340 0.20 +0.5 505,564 - DZA65_RS02340 0.20 +0.2 505,564 - DZA65_RS02340 0.20 +1.7 505,564 - DZA65_RS02340 0.20 -0.2 505,638 - DZA65_RS02340 0.25 -0.0 505,638 - DZA65_RS02340 0.25 +0.6 505,660 + DZA65_RS02340 0.27 -0.3 505,660 + DZA65_RS02340 0.27 +1.2 505,661 - DZA65_RS02340 0.27 +0.1 505,661 - DZA65_RS02340 0.27 -2.1 505,661 - DZA65_RS02340 0.27 +0.6 505,661 - DZA65_RS02340 0.27 -0.3 505,661 - DZA65_RS02340 0.27 +0.5 505,675 + DZA65_RS02340 0.28 -0.2 505,675 + DZA65_RS02340 0.28 -0.4 505,676 - DZA65_RS02340 0.28 -0.1 505,731 - DZA65_RS02340 0.32 +0.2 505,731 - DZA65_RS02340 0.32 +1.2 505,792 - DZA65_RS02340 0.36 -1.7 505,802 + DZA65_RS02340 0.37 -0.5 505,875 + DZA65_RS02340 0.42 +0.7 505,875 + DZA65_RS02340 0.42 -0.1 505,876 - DZA65_RS02340 0.42 +0.8 505,896 + DZA65_RS02340 0.44 -0.8 505,896 + DZA65_RS02340 0.44 +0.3 506,171 + DZA65_RS02340 0.63 +0.4 506,171 + DZA65_RS02340 0.63 +1.1 506,171 + DZA65_RS02340 0.63 -2.1 506,171 + DZA65_RS02340 0.63 -2.0 506,171 + DZA65_RS02340 0.63 -0.8 506,171 + DZA65_RS02340 0.63 -0.5 506,171 + DZA65_RS02340 0.63 +0.7 506,171 + DZA65_RS02340 0.63 +0.1 506,171 + DZA65_RS02340 0.63 -0.9 506,171 + DZA65_RS02340 0.63 -0.6 506,172 - DZA65_RS02340 0.63 -1.1 506,172 - DZA65_RS02340 0.63 +0.5 506,172 - DZA65_RS02340 0.63 +0.2 506,172 - DZA65_RS02340 0.63 +0.0 506,172 - DZA65_RS02340 0.63 +0.1 506,172 - DZA65_RS02340 0.63 +0.1 506,172 - DZA65_RS02340 0.63 -1.5 506,273 + DZA65_RS02340 0.70 +1.5 506,273 + DZA65_RS02340 0.70 +0.5 506,273 + DZA65_RS02340 0.70 -0.6 506,273 + DZA65_RS02340 0.70 +0.1 506,273 + DZA65_RS02340 0.70 +0.9 506,274 - DZA65_RS02340 0.70 -1.4 506,431 + DZA65_RS02340 0.81 +1.9 506,432 - DZA65_RS02340 0.81 -0.4 506,467 - DZA65_RS02340 0.84 -0.0 506,572 + +0.1 506,708 + -0.8 506,708 + -0.9 506,709 - +0.3 506,718 + +0.2 506,719 - -1.4 506,719 - +0.4 506,719 - +0.2 506,719 - -2.5 506,719 - -3.2 506,747 + +1.6 506,747 + +0.9 506,747 + +1.5 506,748 - +0.8 506,748 - -2.7 506,748 - -0.0 506,748 - +0.3 506,748 - -2.7 506,758 + -1.1 506,758 + -0.1 506,758 + +1.8 506,759 - -1.0 506,759 - +0.5 506,759 - +0.8 506,848 + +0.8 506,853 + -0.5 506,979 + +0.8 506,979 + -0.3 506,979 + -0.8 506,979 + +1.1 506,980 - +1.1 506,980 - -0.5 506,980 - -0.3 506,980 - +2.5 506,980 - +1.1 506,980 - +0.3 506,986 - -0.1 507,075 + -0.0 507,075 + +1.5 507,086 + -1.1 507,086 + -0.0 507,086 + -1.1 507,086 + +1.5 507,086 + -1.5 507,087 - +0.3 507,087 - -1.8 507,087 - -0.9 507,097 + -0.3 507,097 + +1.2 507,097 + +0.9 507,098 - -0.0 507,098 - +0.5 507,118 + +0.8 507,118 + -1.1 507,118 + +0.7 507,119 - +1.4 507,119 - +0.3 507,119 - -0.4 507,134 - +1.0 507,277 + DZA65_RS02350 0.20 +0.0 507,277 + DZA65_RS02350 0.20 +0.5 507,278 - DZA65_RS02350 0.20 -1.4 507,278 - DZA65_RS02350 0.20 -0.1 507,278 - DZA65_RS02350 0.20 +0.1 507,278 - DZA65_RS02350 0.20 -2.7 507,278 - DZA65_RS02350 0.20 +0.5 507,304 + DZA65_RS02350 0.23 -0.3 507,458 + DZA65_RS02350 0.39 +1.2 507,596 - DZA65_RS02350 0.54 +0.6
Or see this region's nucleotide sequence