Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00585

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00580 and DZA65_RS00585 are separated by 128 nucleotidesDZA65_RS00585 and DZA65_RS00590 are separated by 199 nucleotides DZA65_RS00580: DZA65_RS00580 - LysR family transcriptional regulator, at 134,388 to 135,296 _RS00580 DZA65_RS00585: DZA65_RS00585 - membrane dipeptidase, at 135,425 to 136,507 _RS00585 DZA65_RS00590: DZA65_RS00590 - ABC transporter substrate-binding protein, at 136,707 to 138,302 _RS00590 Position (kb) 135 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 134.499 kb on + strand, within DZA65_RS00580at 134.499 kb on + strand, within DZA65_RS00580at 134.500 kb on - strand, within DZA65_RS00580at 134.500 kb on - strand, within DZA65_RS00580at 134.500 kb on - strand, within DZA65_RS00580at 134.633 kb on - strand, within DZA65_RS00580at 134.644 kb on + strand, within DZA65_RS00580at 134.644 kb on + strand, within DZA65_RS00580at 134.644 kb on + strand, within DZA65_RS00580at 134.644 kb on + strand, within DZA65_RS00580at 134.645 kb on - strand, within DZA65_RS00580at 134.645 kb on - strand, within DZA65_RS00580at 134.645 kb on - strand, within DZA65_RS00580at 134.739 kb on - strand, within DZA65_RS00580at 134.739 kb on - strand, within DZA65_RS00580at 134.804 kb on + strand, within DZA65_RS00580at 134.804 kb on + strand, within DZA65_RS00580at 134.804 kb on + strand, within DZA65_RS00580at 134.805 kb on - strand, within DZA65_RS00580at 134.805 kb on - strand, within DZA65_RS00580at 134.805 kb on - strand, within DZA65_RS00580at 134.805 kb on - strand, within DZA65_RS00580at 134.805 kb on - strand, within DZA65_RS00580at 134.859 kb on + strand, within DZA65_RS00580at 134.860 kb on - strand, within DZA65_RS00580at 134.891 kb on + strand, within DZA65_RS00580at 134.892 kb on - strand, within DZA65_RS00580at 135.065 kb on + strand, within DZA65_RS00580at 135.065 kb on + strand, within DZA65_RS00580at 135.065 kb on + strand, within DZA65_RS00580at 135.066 kb on - strand, within DZA65_RS00580at 135.066 kb on - strand, within DZA65_RS00580at 135.066 kb on - strand, within DZA65_RS00580at 135.072 kb on + strand, within DZA65_RS00580at 135.072 kb on + strand, within DZA65_RS00580at 135.072 kb on + strand, within DZA65_RS00580at 135.072 kb on + strand, within DZA65_RS00580at 135.072 kb on + strand, within DZA65_RS00580at 135.073 kb on - strand, within DZA65_RS00580at 135.073 kb on - strand, within DZA65_RS00580at 135.073 kb on - strand, within DZA65_RS00580at 135.073 kb on - strand, within DZA65_RS00580at 135.073 kb on - strand, within DZA65_RS00580at 135.073 kb on - strand, within DZA65_RS00580at 135.082 kb on + strand, within DZA65_RS00580at 135.083 kb on - strand, within DZA65_RS00580at 135.083 kb on - strand, within DZA65_RS00580at 135.083 kb on - strand, within DZA65_RS00580at 135.083 kb on - strand, within DZA65_RS00580at 135.225 kb on + strandat 135.357 kb on + strandat 135.357 kb on + strandat 135.357 kb on + strandat 135.379 kb on + strandat 135.398 kb on + strandat 135.398 kb on + strandat 135.482 kb on + strandat 135.529 kb on + strandat 135.627 kb on + strand, within DZA65_RS00585at 135.627 kb on + strand, within DZA65_RS00585at 135.627 kb on + strand, within DZA65_RS00585at 135.627 kb on + strand, within DZA65_RS00585at 135.628 kb on - strand, within DZA65_RS00585at 135.988 kb on + strand, within DZA65_RS00585at 135.989 kb on - strand, within DZA65_RS00585at 136.042 kb on + strand, within DZA65_RS00585at 136.043 kb on - strand, within DZA65_RS00585at 136.151 kb on + strand, within DZA65_RS00585at 136.302 kb on + strand, within DZA65_RS00585at 136.302 kb on + strand, within DZA65_RS00585at 136.302 kb on + strand, within DZA65_RS00585at 136.302 kb on + strand, within DZA65_RS00585at 136.302 kb on + strand, within DZA65_RS00585at 136.303 kb on - strand, within DZA65_RS00585at 136.303 kb on - strand, within DZA65_RS00585at 136.303 kb on - strand, within DZA65_RS00585at 136.622 kb on + strandat 136.773 kb on - strandat 136.830 kb on - strandat 136.896 kb on + strand, within DZA65_RS00590at 136.897 kb on - strand, within DZA65_RS00590at 136.897 kb on - strand, within DZA65_RS00590at 137.168 kb on + strand, within DZA65_RS00590at 137.168 kb on + strand, within DZA65_RS00590at 137.168 kb on + strand, within DZA65_RS00590at 137.168 kb on + strand, within DZA65_RS00590at 137.168 kb on + strand, within DZA65_RS00590at 137.168 kb on + strand, within DZA65_RS00590at 137.168 kb on + strand, within DZA65_RS00590at 137.168 kb on + strand, within DZA65_RS00590at 137.168 kb on + strand, within DZA65_RS00590at 137.168 kb on + strand, within DZA65_RS00590at 137.168 kb on + strand, within DZA65_RS00590at 137.168 kb on + strand, within DZA65_RS00590at 137.168 kb on + strand, within DZA65_RS00590at 137.169 kb on - strand, within DZA65_RS00590at 137.169 kb on - strand, within DZA65_RS00590at 137.169 kb on - strand, within DZA65_RS00590at 137.169 kb on - strand, within DZA65_RS00590at 137.169 kb on - strandat 137.169 kb on - strand, within DZA65_RS00590at 137.169 kb on - strand, within DZA65_RS00590at 137.169 kb on - strand, within DZA65_RS00590at 137.169 kb on - strand, within DZA65_RS00590at 137.169 kb on - strand, within DZA65_RS00590at 137.169 kb on - strand, within DZA65_RS00590at 137.169 kb on - strand, within DZA65_RS00590at 137.169 kb on - strand, within DZA65_RS00590at 137.169 kb on - strand, within DZA65_RS00590at 137.169 kb on - strand, within DZA65_RS00590at 137.169 kb on - strand, within DZA65_RS00590at 137.179 kb on + strand, within DZA65_RS00590at 137.179 kb on + strand, within DZA65_RS00590at 137.179 kb on + strand, within DZA65_RS00590at 137.179 kb on + strand, within DZA65_RS00590at 137.180 kb on - strand, within DZA65_RS00590at 137.217 kb on + strand, within DZA65_RS00590at 137.218 kb on - strand, within DZA65_RS00590at 137.344 kb on + strand, within DZA65_RS00590at 137.344 kb on + strand, within DZA65_RS00590at 137.411 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strandat 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.479 kb on + strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590at 137.480 kb on - strand, within DZA65_RS00590

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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134,499 + DZA65_RS00580 0.12 -0.2
134,499 + DZA65_RS00580 0.12 -0.3
134,500 - DZA65_RS00580 0.12 -0.2
134,500 - DZA65_RS00580 0.12 +0.1
134,500 - DZA65_RS00580 0.12 -0.9
134,633 - DZA65_RS00580 0.27 +1.1
134,644 + DZA65_RS00580 0.28 -0.6
134,644 + DZA65_RS00580 0.28 -0.9
134,644 + DZA65_RS00580 0.28 +2.1
134,644 + DZA65_RS00580 0.28 -1.3
134,645 - DZA65_RS00580 0.28 +0.6
134,645 - DZA65_RS00580 0.28 -0.3
134,645 - DZA65_RS00580 0.28 -1.4
134,739 - DZA65_RS00580 0.39 +0.4
134,739 - DZA65_RS00580 0.39 -0.6
134,804 + DZA65_RS00580 0.46 +0.0
134,804 + DZA65_RS00580 0.46 -1.8
134,804 + DZA65_RS00580 0.46 +0.2
134,805 - DZA65_RS00580 0.46 -0.6
134,805 - DZA65_RS00580 0.46 +0.6
134,805 - DZA65_RS00580 0.46 +1.6
134,805 - DZA65_RS00580 0.46 +0.9
134,805 - DZA65_RS00580 0.46 -0.9
134,859 + DZA65_RS00580 0.52 +0.1
134,860 - DZA65_RS00580 0.52 +0.4
134,891 + DZA65_RS00580 0.55 +0.5
134,892 - DZA65_RS00580 0.55 -2.3
135,065 + DZA65_RS00580 0.74 -0.4
135,065 + DZA65_RS00580 0.74 -1.1
135,065 + DZA65_RS00580 0.74 -0.0
135,066 - DZA65_RS00580 0.75 +0.1
135,066 - DZA65_RS00580 0.75 -0.0
135,066 - DZA65_RS00580 0.75 -0.7
135,072 + DZA65_RS00580 0.75 +1.0
135,072 + DZA65_RS00580 0.75 +0.2
135,072 + DZA65_RS00580 0.75 +0.7
135,072 + DZA65_RS00580 0.75 -0.3
135,072 + DZA65_RS00580 0.75 +1.3
135,073 - DZA65_RS00580 0.75 +0.2
135,073 - DZA65_RS00580 0.75 -2.3
135,073 - DZA65_RS00580 0.75 +0.6
135,073 - DZA65_RS00580 0.75 +1.6
135,073 - DZA65_RS00580 0.75 +0.1
135,073 - DZA65_RS00580 0.75 -0.6
135,082 + DZA65_RS00580 0.76 -0.3
135,083 - DZA65_RS00580 0.76 +0.3
135,083 - DZA65_RS00580 0.76 -1.1
135,083 - DZA65_RS00580 0.76 -2.8
135,083 - DZA65_RS00580 0.76 -0.6
135,225 + -1.0
135,357 + -0.9
135,357 + -0.0
135,357 + +0.6
135,379 + +1.0
135,398 + -0.9
135,398 + -1.3
135,482 + -1.8
135,529 + -0.5
135,627 + DZA65_RS00585 0.19 -1.4
135,627 + DZA65_RS00585 0.19 +1.0
135,627 + DZA65_RS00585 0.19 +0.1
135,627 + DZA65_RS00585 0.19 -0.6
135,628 - DZA65_RS00585 0.19 -0.4
135,988 + DZA65_RS00585 0.52 +0.4
135,989 - DZA65_RS00585 0.52 -0.4
136,042 + DZA65_RS00585 0.57 -0.8
136,043 - DZA65_RS00585 0.57 -0.4
136,151 + DZA65_RS00585 0.67 -0.3
136,302 + DZA65_RS00585 0.81 -2.4
136,302 + DZA65_RS00585 0.81 -1.3
136,302 + DZA65_RS00585 0.81 +0.3
136,302 + DZA65_RS00585 0.81 -1.9
136,302 + DZA65_RS00585 0.81 -0.5
136,303 - DZA65_RS00585 0.81 +0.6
136,303 - DZA65_RS00585 0.81 +0.3
136,303 - DZA65_RS00585 0.81 -0.3
136,622 + +0.3
136,773 - +0.4
136,830 - -0.0
136,896 + DZA65_RS00590 0.12 -2.3
136,897 - DZA65_RS00590 0.12 +0.3
136,897 - DZA65_RS00590 0.12 +1.6
137,168 + DZA65_RS00590 0.29 +0.9
137,168 + DZA65_RS00590 0.29 +1.4
137,168 + DZA65_RS00590 0.29 -0.5
137,168 + DZA65_RS00590 0.29 +0.6
137,168 + DZA65_RS00590 0.29 +0.8
137,168 + DZA65_RS00590 0.29 -0.0
137,168 + DZA65_RS00590 0.29 +0.6
137,168 + DZA65_RS00590 0.29 -0.0
137,168 + DZA65_RS00590 0.29 -0.3
137,168 + DZA65_RS00590 0.29 -0.4
137,168 + DZA65_RS00590 0.29 -0.2
137,168 + DZA65_RS00590 0.29 +0.1
137,168 + DZA65_RS00590 0.29 +0.0
137,169 - DZA65_RS00590 0.29 +1.6
137,169 - DZA65_RS00590 0.29 +0.1
137,169 - DZA65_RS00590 0.29 +0.7
137,169 - DZA65_RS00590 0.29 +0.1
137,169 - -1.0
137,169 - DZA65_RS00590 0.29 +0.5
137,169 - DZA65_RS00590 0.29 -0.0
137,169 - DZA65_RS00590 0.29 -0.6
137,169 - DZA65_RS00590 0.29 +0.7
137,169 - DZA65_RS00590 0.29 -0.0
137,169 - DZA65_RS00590 0.29 -0.4
137,169 - DZA65_RS00590 0.29 +0.2
137,169 - DZA65_RS00590 0.29 -1.3
137,169 - DZA65_RS00590 0.29 +0.8
137,169 - DZA65_RS00590 0.29 +1.1
137,169 - DZA65_RS00590 0.29 -0.4
137,179 + DZA65_RS00590 0.30 -0.4
137,179 + DZA65_RS00590 0.30 +1.1
137,179 + DZA65_RS00590 0.30 +0.4
137,179 + DZA65_RS00590 0.30 +0.1
137,180 - DZA65_RS00590 0.30 +0.1
137,217 + DZA65_RS00590 0.32 -0.7
137,218 - DZA65_RS00590 0.32 -0.2
137,344 + DZA65_RS00590 0.40 -1.8
137,344 + DZA65_RS00590 0.40 +0.6
137,411 + DZA65_RS00590 0.44 -0.0
137,479 + DZA65_RS00590 0.48 -0.7
137,479 + DZA65_RS00590 0.48 +1.1
137,479 + DZA65_RS00590 0.48 +0.1
137,479 + DZA65_RS00590 0.48 -0.7
137,479 + DZA65_RS00590 0.48 -0.1
137,479 + DZA65_RS00590 0.48 -1.0
137,479 + +1.6
137,479 + DZA65_RS00590 0.48 +1.0
137,479 + DZA65_RS00590 0.48 -1.0
137,479 + DZA65_RS00590 0.48 -1.0
137,479 + DZA65_RS00590 0.48 -0.9
137,479 + DZA65_RS00590 0.48 -0.4
137,479 + DZA65_RS00590 0.48 +0.6
137,479 + DZA65_RS00590 0.48 -1.0
137,479 + DZA65_RS00590 0.48 -2.8
137,479 + DZA65_RS00590 0.48 -0.2
137,479 + DZA65_RS00590 0.48 +1.7
137,479 + DZA65_RS00590 0.48 +0.4
137,479 + DZA65_RS00590 0.48 +0.6
137,479 + DZA65_RS00590 0.48 -0.8
137,479 + DZA65_RS00590 0.48 -0.3
137,479 + DZA65_RS00590 0.48 +0.7
137,479 + DZA65_RS00590 0.48 +0.0
137,480 - DZA65_RS00590 0.48 +0.8
137,480 - DZA65_RS00590 0.48 +0.1
137,480 - DZA65_RS00590 0.48 +1.6
137,480 - DZA65_RS00590 0.48 -1.4
137,480 - DZA65_RS00590 0.48 -1.8
137,480 - DZA65_RS00590 0.48 +0.9
137,480 - DZA65_RS00590 0.48 +0.4
137,480 - DZA65_RS00590 0.48 -0.6
137,480 - DZA65_RS00590 0.48 +1.1
137,480 - DZA65_RS00590 0.48 +0.7
137,480 - DZA65_RS00590 0.48 -1.9
137,480 - DZA65_RS00590 0.48 -0.5
137,480 - DZA65_RS00590 0.48 +1.3
137,480 - DZA65_RS00590 0.48 -1.4
137,480 - DZA65_RS00590 0.48 +0.2
137,480 - DZA65_RS00590 0.48 -0.1
137,480 - DZA65_RS00590 0.48 -0.0
137,480 - DZA65_RS00590 0.48 +0.1
137,480 - DZA65_RS00590 0.48 -0.2
137,480 - DZA65_RS00590 0.48 +0.0

Or see this region's nucleotide sequence