Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00130

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	PDB
				remove
29,782	-	DZA65_RS00125	0.63	-0.6
29,810	+	DZA65_RS00125	0.65	+0.6
29,810	+	DZA65_RS00125	0.65	-0.1
29,811	-	DZA65_RS00125	0.65	-0.0
29,817	+	DZA65_RS00125	0.66	-0.8
29,817	+	DZA65_RS00125	0.66	-0.7
29,817	+	DZA65_RS00125	0.66	+0.3
29,818	-	DZA65_RS00125	0.66	-0.4
29,818	-	DZA65_RS00125	0.66	-0.9
29,818	-	DZA65_RS00125	0.66	-0.4
29,858	+	DZA65_RS00125	0.69	-0.2
29,859	-	DZA65_RS00125	0.69	-0.1
29,861	+	DZA65_RS00125	0.69	-0.0
29,862	-	DZA65_RS00125	0.69	-0.4
29,862	-	DZA65_RS00125	0.69	-0.3
29,873	+	DZA65_RS00125	0.70	-0.4
29,873	+	DZA65_RS00125	0.70	+0.8
29,875	+	DZA65_RS00125	0.70	-0.3
29,876	-	DZA65_RS00125	0.70	-1.4
29,876	-	DZA65_RS00125	0.70	+0.2
29,903	+	DZA65_RS00125	0.72	-0.9
29,927	+	DZA65_RS00125	0.74	+1.1
29,928	-	DZA65_RS00125	0.74	+0.1
29,928	-	DZA65_RS00125	0.74	-1.0
29,928	-	DZA65_RS00125	0.74	+1.3
29,928	-	DZA65_RS00125	0.74	-0.3
29,928	-	DZA65_RS00125	0.74	-0.4
29,930	-	DZA65_RS00125	0.74	+0.6
30,263	+			-0.4
30,336	-			-0.6
30,450	-			-1.6
30,450	-			-0.2
30,676	+			+0.1
30,679	+			+0.6
30,747	-			-0.2
30,772	+			+0.1
30,773	-			-0.3
30,773	-			+0.3
30,773	-			+1.0
30,895	+	DZA65_RS00130	0.17	-0.8
30,896	-	DZA65_RS00130	0.17	-1.6
30,968	-	DZA65_RS00130	0.25	+1.3
30,968	-	DZA65_RS00130	0.25	-3.0
30,995	+	DZA65_RS00130	0.28	+0.7
30,995	+	DZA65_RS00130	0.28	+0.5
30,996	-	DZA65_RS00130	0.28	-2.0
30,996	-	DZA65_RS00130	0.28	-1.3
31,104	+	DZA65_RS00130	0.40	+1.8
31,123	+	DZA65_RS00130	0.43	-0.0
31,138	+	DZA65_RS00130	0.44	-0.8
31,138	+	DZA65_RS00130	0.44	+0.2
31,139	-	DZA65_RS00130	0.44	-1.8
31,162	+	DZA65_RS00130	0.47	-0.8
31,221	+	DZA65_RS00130	0.54	-0.4
31,221	+	DZA65_RS00130	0.54	+0.3
31,222	-	DZA65_RS00130	0.54	-0.3
31,235	+	DZA65_RS00130	0.55	-0.2
31,235	+	DZA65_RS00130	0.55	+1.0
31,235	+	DZA65_RS00130	0.55	+1.0
31,235	+	DZA65_RS00130	0.55	-2.6
31,235	+	DZA65_RS00130	0.55	-1.4
31,236	-	DZA65_RS00130	0.55	+0.6
31,236	-	DZA65_RS00130	0.55	-0.7
31,236	-	DZA65_RS00130	0.55	-1.3
31,236	-	DZA65_RS00130	0.55	-0.4
31,236	-	DZA65_RS00130	0.55	-0.5
31,236	-	DZA65_RS00130	0.55	+0.6
31,236	-	DZA65_RS00130	0.55	-0.1
31,236	-	DZA65_RS00130	0.55	-2.8
31,259	-	DZA65_RS00130	0.58	+1.1
31,312	+	DZA65_RS00130	0.64	-0.8
31,312	+	DZA65_RS00130	0.64	-1.2
31,312	+	DZA65_RS00130	0.64	-0.4
31,312	+	DZA65_RS00130	0.64	+0.1
31,312	+	DZA65_RS00130	0.64	-0.1
31,313	-	DZA65_RS00130	0.64	-1.4
31,313	-	DZA65_RS00130	0.64	-0.4
31,341	+	DZA65_RS00130	0.67	-0.3
31,341	+	DZA65_RS00130	0.67	-0.4
31,341	+	DZA65_RS00130	0.67	-0.9
31,341	+	DZA65_RS00130	0.67	+0.8
31,341	+	DZA65_RS00130	0.67	-0.7
31,341	+	DZA65_RS00130	0.67	-0.6
31,342	-	DZA65_RS00130	0.67	+0.6
31,378	+	DZA65_RS00130	0.71	-0.1
31,379	-	DZA65_RS00130	0.71	+0.3
31,379	-	DZA65_RS00130	0.71	+0.3
31,379	-	DZA65_RS00130	0.71	-0.6
31,379	-	DZA65_RS00130	0.71	+1.8
31,435	+	DZA65_RS00130	0.77	-0.1
31,435	+	DZA65_RS00130	0.77	-0.6
31,435	+	DZA65_RS00130	0.77	-0.6
31,435	+	DZA65_RS00130	0.77	+0.6
31,435	+	DZA65_RS00130	0.77	+0.9
31,435	+			+0.6
31,435	+	DZA65_RS00130	0.77	-0.4
31,435	+	DZA65_RS00130	0.77	-1.4
31,436	-	DZA65_RS00130	0.77	-0.0
31,436	-	DZA65_RS00130	0.77	-0.4
31,436	-	DZA65_RS00130	0.77	-2.6
31,436	-	DZA65_RS00130	0.77	+0.3
31,436	-	DZA65_RS00130	0.77	-0.4
31,436	-	DZA65_RS00130	0.77	-0.7
31,436	-	DZA65_RS00130	0.77	-2.4
31,436	-	DZA65_RS00130	0.77	+0.2
31,436	-	DZA65_RS00130	0.77	+0.4
31,436	-	DZA65_RS00130	0.77	+0.6
31,436	-	DZA65_RS00130	0.77	+0.3
31,447	+	DZA65_RS00130	0.79	-0.2
31,447	+	DZA65_RS00130	0.79	+1.3
31,447	+	DZA65_RS00130	0.79	+1.2
31,448	-	DZA65_RS00130	0.79	-0.5
31,448	-	DZA65_RS00130	0.79	+0.8
31,448	-	DZA65_RS00130	0.79	-0.9
31,489	+	DZA65_RS00130	0.83	-1.8
31,490	-	DZA65_RS00130	0.84	-1.0
31,519	+	DZA65_RS00130	0.87	+0.2
31,519	+	DZA65_RS00130	0.87	+0.2
31,520	-	DZA65_RS00130	0.87	+0.4
31,520	-	DZA65_RS00130	0.87	+0.5
31,528	+	DZA65_RS00130	0.88	-2.1
31,528	+	DZA65_RS00130	0.88	+0.7
31,529	-	DZA65_RS00130	0.88	+0.2
31,529	-	DZA65_RS00130	0.88	+0.3
31,571	+			+0.0
31,571	+			-1.3
31,603	+			+0.2
31,603	+			+0.6
31,612	+			-1.2
31,612	+			-1.0
31,612	+			-0.7
31,612	+			-0.3
31,636	-			-0.2
31,652	+			+0.2
31,652	+			+0.9
31,672	+			-0.8
31,672	+			-0.8
31,672	+			+0.3
31,673	-			-1.6
31,673	-			-0.3
31,674	+			+0.2
31,674	+			+0.2
31,674	+			-0.1
31,674	+			+0.4
31,674	+			-1.4
31,674	+			+0.1
31,674	+			+0.6
31,674	+			+0.6
31,674	+			+1.3
31,674	+			-0.3
31,674	+			+1.2
31,674	+			-0.5
31,674	+			-2.3
31,674	+			+1.2
31,674	+			+1.5
31,674	+			+0.4
31,674	+			+0.0
31,674	+			-2.3
31,674	+			-1.8
31,674	+			-2.0
31,675	-			-0.6
31,675	-			+0.4
31,675	-			-0.4
31,675	-			-0.7
31,675	-			-0.1
31,675	-			-0.3
31,675	-			-0.1
31,675	-			+0.4
31,675	-			-0.8
31,675	-			-2.6
31,675	-			-0.0
31,675	-			-0.9
31,675	-			-1.0
31,678	+			-0.1
31,678	+			+0.0
31,678	+			-2.4
31,678	+			+1.4
31,678	+			+0.0
31,678	+			-0.3
31,678	+			-1.4
31,678	+			-1.0
31,679	-			-2.3
31,679	-			-0.1
31,679	-			-0.3
31,679	-			-0.4
31,722	-			-1.4
31,833	+			-0.4
31,833	+			-0.2
31,833	+			-0.6
31,834	-			-0.8
31,861	+			-0.7
31,861	+			+0.2
31,861	+			+0.3
31,861	+			-0.4
31,861	+			-0.2
31,861	+			-1.2
31,861	+			+1.2
31,862	-			-0.1
31,862	-			-0.3
31,862	-			-3.1
31,862	-			-0.6
31,862	-			+0.1
31,862	-			+0.0
31,862	-			+0.1
31,889	-			-0.4
31,967	+			+0.9
31,967	+			-2.6
31,968	-			-1.0
31,968	-			-0.1
31,968	-			-0.1
31,968	-			-0.4
31,984	+			-0.8
31,984	+			-0.4
31,984	+			-1.8
31,984	+			-1.4
31,984	+			+0.9
31,985	-			-1.6
31,985	-			-0.7
31,985	-			-1.4
31,985	-			-1.1
31,985	-			+1.0
31,985	-			-1.3
31,985	-			-1.3
31,985	-			+1.2
31,996	+			+0.4
31,996	+			-1.6
31,996	+			+0.3
31,997	-			-1.4
31,997	-			+0.2
31,997	-			-0.4
32,042	+			-2.4
32,042	+			+0.6
32,042	+			+0.7
32,042	+			-1.8
32,043	-			+0.6
32,043	-			-0.1
32,043	-			-1.9
32,043	-			-0.4
32,043	-			-1.0
32,103	-			-0.0
32,153	+	DZA65_RS00135	0.17	+0.4
32,237	+	DZA65_RS00135	0.35	+1.7
32,237	+	DZA65_RS00135	0.35	-1.4
32,237	+	DZA65_RS00135	0.35	-0.2
32,237	+	DZA65_RS00135	0.35	+0.2
32,237	+	DZA65_RS00135	0.35	-0.1
32,237	+	DZA65_RS00135	0.35	-1.4
32,237	+	DZA65_RS00135	0.35	-0.6
32,238	-	DZA65_RS00135	0.35	+0.4
32,238	-	DZA65_RS00135	0.35	-2.3
32,238	-	DZA65_RS00135	0.35	-0.8
32,238	-	DZA65_RS00135	0.35	-0.2
32,238	-	DZA65_RS00135	0.35	-1.8
32,238	-	DZA65_RS00135	0.35	+0.1
32,238	-	DZA65_RS00135	0.35	-1.4
32,238	-	DZA65_RS00135	0.35	+0.4
32,238	-	DZA65_RS00135	0.35	-1.8
32,238	-	DZA65_RS00135	0.35	-0.3
32,238	-	DZA65_RS00135	0.35	-0.4
32,238	-	DZA65_RS00135	0.35	+0.1
32,238	-	DZA65_RS00135	0.35	+0.6
32,238	-	DZA65_RS00135	0.35	-0.6
32,310	+	DZA65_RS00135	0.50	+0.3
32,310	+	DZA65_RS00135	0.50	+0.4
32,310	+	DZA65_RS00135	0.50	+0.2
32,310	+	DZA65_RS00135	0.50	+0.4
32,310	+	DZA65_RS00135	0.50	+0.1
32,310	+	DZA65_RS00135	0.50	+0.8
32,310	+	DZA65_RS00135	0.50	+0.6
32,310	+	DZA65_RS00135	0.50	-0.2
32,311	-	DZA65_RS00135	0.50	+0.6
32,311	-	DZA65_RS00135	0.50	+0.1
32,311	-			+0.6
32,311	-	DZA65_RS00135	0.50	+1.0
32,311	-	DZA65_RS00135	0.50	-0.4
32,317	-	DZA65_RS00135	0.52	-1.0
32,317	-	DZA65_RS00135	0.52	-0.3
32,317	-	DZA65_RS00135	0.52	-0.1
32,317	-	DZA65_RS00135	0.52	-0.3
32,370	+	DZA65_RS00135	0.63	-0.4
32,371	-	DZA65_RS00135	0.63	-1.3
32,419	+	DZA65_RS00135	0.74	-0.1
32,435	+	DZA65_RS00135	0.77	+0.1
32,474	+	DZA65_RS00135	0.85	-0.4
32,475	-	DZA65_RS00135	0.85	+1.6
32,504	+			-2.6
32,504	+			+0.6
32,504	+			-0.4
32,505	-			-0.3
32,505	-			+1.1
32,563	-			-1.4
32,572	+			+0.1
32,572	+			-1.8
32,593	-			+1.1

Or see this region's nucleotide sequence