Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00045

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
9,996	+		DZA65_RS00035	0.83	-2.5
10,032	+		DZA65_RS00035	0.84	-1.3
10,032	+		DZA65_RS00035	0.84	-1.0
10,032	+		DZA65_RS00035	0.84	+0.6
10,032	+		DZA65_RS00035	0.84	-3.3
10,033	-		DZA65_RS00035	0.84	-2.3
10,033	-		DZA65_RS00035	0.84	-1.4
10,033	-		DZA65_RS00035	0.84	-2.3
10,033	-		DZA65_RS00035	0.84	-2.4
10,033	-		DZA65_RS00035	0.84	-0.9
10,033	-		DZA65_RS00035	0.84	-2.0
10,060	+		DZA65_RS00035	0.86	-1.4
10,061	-		DZA65_RS00035	0.86	-2.4
10,061	-		DZA65_RS00035	0.86	-2.4
10,061	-		DZA65_RS00035	0.86	-1.6
10,065	+				-0.4
10,065	+		DZA65_RS00035	0.86	-2.7
10,065	+		DZA65_RS00035	0.86	-2.0
10,066	-		DZA65_RS00035	0.86	+0.6
10,066	-		DZA65_RS00035	0.86	-1.7
10,066	-		DZA65_RS00035	0.86	-2.8
10,066	-		DZA65_RS00035	0.86	-1.8
10,324	+				-0.0
10,337	+				-0.5
10,337	+				-1.0
10,337	+				-1.0
10,337	+				-1.9
10,337	+				+0.0
10,338	-				-0.2
10,338	-				-2.3
10,338	-				+0.4
10,338	-				-1.9
10,338	-				-2.1
10,338	-				-2.1
10,383	+				-1.3
10,383	+				-0.8
10,383	+				-0.2
10,383	+				+1.0
10,383	+				-0.5
10,384	-				+0.2
10,384	-				+0.3
10,384	-				-0.3
10,384	-				-0.4
10,384	-				-0.4
10,384	-				-0.4
10,384	-				-1.0
10,396	-				+0.2
10,396	-				-0.9
10,396	-				-0.4
10,435	+				+0.6
10,436	-				-0.0
10,498	+				-1.3
10,498	+				+0.8
10,511	+				-0.1
10,511	+				+0.6
10,512	-				+0.0
10,513	+				-0.1
10,514	-				-0.2
10,523	-				+0.4
10,559	+		DZA65_RS00040	0.22	+1.9
10,678	+		DZA65_RS00040	0.64	-0.9
10,678	+		DZA65_RS00040	0.64	+1.6
10,678	+		DZA65_RS00040	0.64	+1.7
10,679	-		DZA65_RS00040	0.64	+0.6
10,679	-		DZA65_RS00040	0.64	+0.6
10,702	+		DZA65_RS00040	0.72	+0.3
10,702	+		DZA65_RS00040	0.72	-0.0
10,703	-		DZA65_RS00040	0.72	+0.3
10,703	-		DZA65_RS00040	0.72	+1.7
10,703	-		DZA65_RS00040	0.72	-0.7
10,703	-		DZA65_RS00040	0.72	+0.2
10,703	-		DZA65_RS00040	0.72	-0.2
10,758	-				-0.8
10,807	+				-0.2
10,858	+				+0.3
10,858	+				+2.1
10,879	-				-0.7
10,879	-				-1.6
10,899	+				-1.6
10,899	+				-0.4
10,899	+				-0.1
10,899	+				+1.7
10,899	+				-1.0
10,900	-				-0.9
10,900	-				-0.3
10,900	-				-0.6
10,901	+				-0.0
10,901	+				+1.0
10,901	+				-0.7
10,901	+				+0.6
10,901	+				+0.5
10,901	+				+0.6
10,901	+				+1.1
10,901	+				+0.9
10,901	+				-0.4
10,901	+				-0.4
10,901	+				-0.0
10,902	-				-3.1
10,902	-				-0.9
10,902	-				+0.6
10,902	-				+0.1
10,902	-				+1.1
10,902	-				-0.4
10,902	-				-0.4
10,902	-				-1.1
10,902	-				+0.6
10,902	-				+0.2
10,902	-				+0.3
10,902	-				-0.4
10,904	+				-0.8
10,904	+				-2.0
10,904	+				-0.1
10,904	+				-0.9
10,905	-				-2.0
10,953	+				-0.2
10,953	+				+0.1
10,953	+				-0.6
10,953	+				+0.5
10,953	+				-1.0
10,954	-				-1.4
10,954	-				-1.6
10,954	-				-0.0
10,954	-				-3.4
10,964	-				-0.7
11,065	+		DZA65_RS00045	0.13	+1.2
11,066	-		DZA65_RS00045	0.13	-1.6
11,066	-		DZA65_RS00045	0.13	-0.0
11,066	-		DZA65_RS00045	0.13	+0.6
11,066	-		DZA65_RS00045	0.13	-1.4
11,066	-		DZA65_RS00045	0.13	+1.3
11,074	-		DZA65_RS00045	0.14	+1.1
11,134	+		DZA65_RS00045	0.21	-0.3
11,134	+		DZA65_RS00045	0.21	+1.3
11,134	+		DZA65_RS00045	0.21	-2.8
11,194	+		DZA65_RS00045	0.28	-0.0
11,194	+		DZA65_RS00045	0.28	+1.1
11,194	+		DZA65_RS00045	0.28	+0.3
11,194	+		DZA65_RS00045	0.28	-0.1
11,194	+		DZA65_RS00045	0.28	+0.9
11,194	+		DZA65_RS00045	0.28	+0.4
11,194	+		DZA65_RS00045	0.28	+1.7
11,194	+		DZA65_RS00045	0.28	-1.1
11,194	+		DZA65_RS00045	0.28	-0.7
11,194	+		DZA65_RS00045	0.28	+1.5
11,194	+		DZA65_RS00045	0.28	+1.0
11,194	+		DZA65_RS00045	0.28	+0.6
11,195	-		DZA65_RS00045	0.29	+0.3
11,195	-		DZA65_RS00045	0.29	-0.7
11,195	-		DZA65_RS00045	0.29	+0.0
11,195	-		DZA65_RS00045	0.29	+0.6
11,195	-		DZA65_RS00045	0.29	-1.0
11,195	-		DZA65_RS00045	0.29	-1.4
11,195	-		DZA65_RS00045	0.29	-0.8
11,195	-		DZA65_RS00045	0.29	-0.2
11,215	+		DZA65_RS00045	0.31	-0.2
11,216	-		DZA65_RS00045	0.31	+0.6
11,216	-		DZA65_RS00045	0.31	-0.6
11,216	-		DZA65_RS00045	0.31	+1.7
11,216	-		DZA65_RS00045	0.31	+1.6
11,217	+		DZA65_RS00045	0.31	-1.4
11,217	+		DZA65_RS00045	0.31	-2.0
11,217	+		DZA65_RS00045	0.31	+0.7
11,218	-		DZA65_RS00045	0.31	+0.1
11,239	+		DZA65_RS00045	0.34	-0.4
11,240	-		DZA65_RS00045	0.34	-0.1
11,240	-		DZA65_RS00045	0.34	+2.1
11,452	+		DZA65_RS00045	0.59	-0.4
11,453	-		DZA65_RS00045	0.59	+0.9
11,562	+		DZA65_RS00045	0.72	-2.4
11,562	+		DZA65_RS00045	0.72	-0.8
11,562	+		DZA65_RS00045	0.72	+0.3
11,562	+		DZA65_RS00045	0.72	-0.7
11,562	+		DZA65_RS00045	0.72	+0.7
11,562	+		DZA65_RS00045	0.72	+0.5
11,563	-		DZA65_RS00045	0.72	+1.1
11,563	-		DZA65_RS00045	0.72	-0.6
11,563	-		DZA65_RS00045	0.72	+1.4
11,563	-		DZA65_RS00045	0.72	-0.4
11,592	+		DZA65_RS00045	0.76	+0.2
11,607	+		DZA65_RS00045	0.77	-1.3
11,767	-				+0.3
11,794	+				-0.7
11,795	-				+0.0
11,806	+				+0.1
11,806	+				-0.4
11,806	+				-1.9
11,806	+				-0.4
11,807	-				+0.3
11,807	-				-0.4
11,807	-				-3.1
11,807	-				-2.3
11,807	-				-0.3
11,807	-				-0.3
11,807	-				+0.3
11,817	+				-2.3
11,817	+				+0.7
11,818	-				+0.7
11,818	-				+1.1
11,824	+				-0.9
11,824	+				-0.7
11,824	+				-0.4
11,825	-				+0.6
11,838	+				-1.3
11,838	+				+0.1
11,838	+				+0.1
11,838	+				-2.6
11,838	+				-0.3
11,838	+				-0.4
11,838	+				-2.3
11,838	+				-0.3
11,838	+				-0.3
11,838	+				+0.6
11,839	-				-1.4
11,839	-				+0.0
11,839	-				-1.4
11,839	-				-1.0
11,839	-				-1.8
11,839	-				-1.1
11,845	+				-0.6
11,845	+				+0.7
11,845	+				-0.2
11,845	+				+0.9
11,845	+				+1.7
11,846	-				-0.6
11,846	-				-1.0
11,860	+				-0.4
11,861	-				-0.4
11,861	-				-0.4
11,867	+				+0.7
11,867	+				-1.3
11,867	+				+0.1
11,867	+				-0.3
11,875	+				-0.8
11,875	+				-0.3
11,875	+				-0.7
11,875	+				-0.3
11,875	+				-1.4
11,876	-				+0.6
11,876	-				+1.0
11,876	-				+0.6
11,882	+				-0.3
11,882	+				-0.4
11,882	+				-0.0
11,882	+				-0.0
11,882	+				-0.3
11,883	-				-0.2
11,883	-				+1.8
11,883	-				-1.9
11,896	+				+0.5
11,896	+				+0.1
12,057	+		DZA65_RS00050	0.18	+1.0
12,057	+		DZA65_RS00050	0.18	+0.8
12,057	+		DZA65_RS00050	0.18	-0.2
12,123	+		DZA65_RS00050	0.25	+1.0
12,123	+		DZA65_RS00050	0.25	-1.0
12,123	+		DZA65_RS00050	0.25	-0.3
12,123	+		DZA65_RS00050	0.25	-2.4
12,123	+		DZA65_RS00050	0.25	+0.9
12,123	+		DZA65_RS00050	0.25	-1.6
12,123	+		DZA65_RS00050	0.25	+0.4
12,123	+		DZA65_RS00050	0.25	-0.4
12,123	+		DZA65_RS00050	0.25	-2.4
12,123	+		DZA65_RS00050	0.25	-0.2
12,123	+		DZA65_RS00050	0.25	+0.3
12,124	-		DZA65_RS00050	0.25	-0.1
12,124	-		DZA65_RS00050	0.25	-0.7
12,124	-		DZA65_RS00050	0.25	-1.2
12,124	-		DZA65_RS00050	0.25	+0.4
12,124	-		DZA65_RS00050	0.25	-1.2
12,124	-		DZA65_RS00050	0.25	-0.0
12,124	-		DZA65_RS00050	0.25	-0.0
12,188	+		DZA65_RS00050	0.32	-1.6
12,188	+		DZA65_RS00050	0.32	-0.4
12,188	+		DZA65_RS00050	0.32	+0.6
12,188	+		DZA65_RS00050	0.32	+0.6
12,188	+		DZA65_RS00050	0.32	-1.6
12,188	+		DZA65_RS00050	0.32	+1.0
12,188	+		DZA65_RS00050	0.32	-0.9
12,189	-		DZA65_RS00050	0.32	+0.0
12,189	-		DZA65_RS00050	0.32	+1.6
12,189	-		DZA65_RS00050	0.32	+1.0
12,189	-		DZA65_RS00050	0.32	-2.6
12,189	-		DZA65_RS00050	0.32	-0.0
12,192	+		DZA65_RS00050	0.32	-1.3
12,192	+		DZA65_RS00050	0.32	+0.7
12,192	+		DZA65_RS00050	0.32	+0.7
12,192	+		DZA65_RS00050	0.32	-1.3
12,223	+		DZA65_RS00050	0.36	-0.3
12,223	+		DZA65_RS00050	0.36	-0.0
12,223	+		DZA65_RS00050	0.36	+0.6
12,223	+		DZA65_RS00050	0.36	+0.8
12,224	-		DZA65_RS00050	0.36	-0.7
12,292	+		DZA65_RS00050	0.43	-0.4
12,293	-		DZA65_RS00050	0.43	-1.4
12,382	+		DZA65_RS00050	0.53	+1.7
12,382	+		DZA65_RS00050	0.53	-0.2
12,382	+		DZA65_RS00050	0.53	+0.1
12,382	+		DZA65_RS00050	0.53	+0.2
12,382	+		DZA65_RS00050	0.53	+0.1
12,382	+		DZA65_RS00050	0.53	-1.6
12,382	+		DZA65_RS00050	0.53	-0.0
12,382	+		DZA65_RS00050	0.53	-0.3
12,382	+		DZA65_RS00050	0.53	+0.1
12,383	-		DZA65_RS00050	0.53	+0.2
12,383	-		DZA65_RS00050	0.53	+0.4
12,383	-		DZA65_RS00050	0.53	-0.9
12,383	-		DZA65_RS00050	0.53	+0.5
12,416	+		DZA65_RS00050	0.57	+0.2
12,522	+		DZA65_RS00050	0.69	-0.4
12,569	+		DZA65_RS00050	0.74	+1.3
12,570	-		DZA65_RS00050	0.74	+1.0
12,570	-		DZA65_RS00050	0.74	+2.1
12,570	-		DZA65_RS00050	0.74	-2.4
12,570	-		DZA65_RS00050	0.74	+1.3