Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS23005

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,545,684	+		DZA65_RS11925	0.24	+0.7
2,545,707	+		DZA65_RS11925	0.32	-2.0
2,545,727	+		DZA65_RS11925	0.39	-0.8
2,545,877	+				+1.0
2,545,938	+				-0.3
2,546,042	+		DZA65_RS11930	0.24	-0.1
2,546,042	+		DZA65_RS11930	0.24	-0.6
2,546,042	+		DZA65_RS11930	0.24	+0.2
2,546,043	-		DZA65_RS11930	0.24	+0.8
2,546,149	+		DZA65_RS11930	0.74	-0.7
2,546,264	+				+0.6
2,546,264	+				-0.5
2,546,265	-				-0.0
2,546,265	-				-0.4
2,546,334	+		DZA65_RS11935	0.25	+0.8
2,546,335	-		DZA65_RS11935	0.25	-2.4
2,546,335	-		DZA65_RS11935	0.25	-0.1
2,546,336	+		DZA65_RS11935	0.26	-0.2
2,546,336	+		DZA65_RS11935	0.26	-0.3
2,546,336	+		DZA65_RS11935	0.26	-1.2
2,546,336	+		DZA65_RS11935	0.26	-0.5
2,546,336	+		DZA65_RS11935	0.26	+0.0
2,546,337	-		DZA65_RS11935	0.26	-0.2
2,546,337	-		DZA65_RS11935	0.26	+0.8
2,546,337	-		DZA65_RS11935	0.26	-0.6
2,546,337	-				+2.2
2,546,355	+		DZA65_RS11935	0.31	-0.0
2,546,355	+		DZA65_RS11935	0.31	+0.3
2,546,372	+		DZA65_RS11935	0.36	-0.8
2,546,372	+		DZA65_RS11935	0.36	+0.7
2,546,372	+		DZA65_RS11935	0.36	-1.4
2,546,373	-		DZA65_RS11935	0.36	-0.5
2,546,376	+		DZA65_RS11935	0.37	-2.1
2,546,376	+		DZA65_RS11935	0.37	-0.8
2,546,377	-		DZA65_RS11935	0.37	-1.1
2,546,401	+		DZA65_RS11935	0.44	-0.1
2,546,401	+		DZA65_RS11935	0.44	+0.8
2,546,401	+		DZA65_RS11935	0.44	+0.1
2,546,401	+		DZA65_RS11935	0.44	+0.5
2,546,402	-		DZA65_RS11935	0.44	-0.8
2,546,442	+		DZA65_RS11935	0.56	-0.2
2,546,443	-		DZA65_RS11935	0.56	+0.2
2,546,443	-		DZA65_RS11935	0.56	+0.2
2,546,448	+		DZA65_RS11935	0.57	+0.2
2,546,448	+		DZA65_RS11935	0.57	-0.8
2,546,449	-		DZA65_RS11935	0.58	+0.6
2,546,449	-		DZA65_RS11935	0.58	-0.1
2,546,449	-		DZA65_RS11935	0.58	-0.8
2,546,449	-		DZA65_RS11935	0.58	+1.0
2,546,449	-		DZA65_RS11935	0.58	+0.8
2,546,452	+		DZA65_RS11935	0.58	-0.1
2,546,453	-		DZA65_RS11935	0.59	-0.6
2,546,453	-		DZA65_RS11935	0.59	+0.4
2,546,463	-		DZA65_RS11935	0.62	+0.2
2,546,467	+		DZA65_RS11935	0.63	-0.1
2,546,491	+		DZA65_RS11935	0.69	-0.3
2,546,491	+		DZA65_RS11935	0.69	-0.0
2,546,492	-		DZA65_RS11935	0.70	+0.2
2,546,492	-		DZA65_RS11935	0.70	+1.1
2,546,514	+		DZA65_RS11935	0.76	-0.4
2,546,575	+				-1.8
2,546,575	+				-0.5
2,546,575	+				-1.5
2,546,576	-				+0.5
2,546,576	-				-0.2
2,546,577	+				-3.0
2,546,578	-				+0.8
2,546,578	-				-0.3
2,546,578	-				+0.5
2,546,578	-				+0.2
2,546,578	-				-1.3
2,546,578	-				-0.6
2,546,578	-				-3.5
2,546,578	-				+0.6
2,546,606	+				-0.5
2,546,606	+				-1.4
2,546,612	+				-1.4
2,546,612	+				+0.6
2,546,613	-				-0.5
2,546,613	-				-0.1
2,546,657	+				-0.8
2,546,658	-				+0.6
2,546,658	-				-0.9
2,546,664	+				+0.2
2,546,665	-				+1.2
2,546,679	+				-1.1
2,546,680	-				+0.9
2,546,688	+				-1.8
2,546,688	+				-0.5
2,546,689	-				-0.8
2,546,689	-				-0.9
2,546,717	+				-1.0
2,546,718	-				-0.3
2,546,719	+				+1.2
2,546,719	+				-1.0
2,546,720	-				-0.8
2,546,720	-				+0.3
2,546,720	-				+0.1
2,546,723	+				-0.7
2,546,724	-				+0.5
2,546,724	-				-0.3
2,546,724	-				+1.7
2,546,724	-				-1.8
2,546,724	-				+0.0
2,546,727	+				+1.4
2,546,745	+				+0.2
2,546,745	+				-0.9
2,546,745	+				-1.0
2,546,745	+				-0.8
2,546,745	+				+1.8
2,546,746	-				-1.2
2,546,746	-				+0.5
2,546,771	+		DZA65_RS23005	0.10	-0.9
2,546,771	+		DZA65_RS23005	0.10	-1.0
2,546,772	-		DZA65_RS23005	0.10	-1.8
2,546,772	-				+0.8
2,546,776	-		DZA65_RS23005	0.10	+0.2
2,546,776	-		DZA65_RS23005	0.10	-0.3
2,547,122	-		DZA65_RS23005	0.30	-1.2
2,547,122	-		DZA65_RS23005	0.30	+0.5
2,547,483	-		DZA65_RS23005	0.51	-0.3
2,547,665	-		DZA65_RS23005	0.61	+1.4
2,548,094	-		DZA65_RS23005	0.86	-0.6
2,548,094	-		DZA65_RS23005	0.86	+0.2
2,548,231	+				-1.2
2,548,231	+				-1.4
2,548,231	+				+0.0
2,548,231	+				-0.0
2,548,231	+				-0.4
2,548,231	+				-2.2
2,548,231	+				+0.6
2,548,231	+				-1.0
2,548,231	+				-0.6
2,548,231	+				-0.8
2,548,231	+				-0.6
2,548,231	+				-0.2
2,548,231	+				-0.8
2,548,231	+				+0.1
2,548,231	+				+0.9
2,548,231	+				+0.4
2,548,231	+				-0.3
2,548,231	+				+0.2
2,548,231	+				+1.1
2,548,231	+				-0.4
2,548,253	+				+0.2
2,548,259	+				+0.8
2,548,259	+				-0.0
2,548,259	+				-0.4
2,548,259	+				+0.0
2,548,259	+				+2.5
2,548,259	+				+2.0
2,548,260	-				+1.5
2,548,260	-				-0.1
2,548,869	+				-1.2
2,548,870	-				+0.4
2,548,870	-				-0.2
2,548,901	-				+0.0
2,548,901	-				-0.8
2,548,910	-				-0.5
2,548,910	-				+0.6
2,548,910	-				+0.2
2,548,910	-				-2.1
2,548,913	+				+0.9
2,548,914	-				-0.5
2,548,914	-				-1.1
2,548,914	-				+0.7
2,548,914	-				-0.1
2,548,914	-				-1.1
2,548,914	-				+1.4
2,548,914	-				-0.3
2,548,914	-				-0.3
2,548,914	-				+0.2
2,548,917	-				-0.6
2,548,917	-				+0.1
2,549,193	-				-1.1
2,549,198	-				+0.7
2,549,212	+				-0.0
2,549,213	-		DZA65_RS11955	0.10	+1.3
2,549,225	+		DZA65_RS11955	0.14	+0.4
2,549,281	+		DZA65_RS11955	0.33	-0.1
2,549,281	+		DZA65_RS11955	0.33	-1.4
2,549,332	-		DZA65_RS11955	0.50	-0.7