Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22925

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,764,760	-				+1.1
2,764,760	-				-0.1
2,764,783	+				-0.0
2,764,818	+				-1.1
2,764,818	+				-0.3
2,764,819	-				+0.4
2,764,856	+				+0.4
2,764,856	+				+0.7
2,764,856	+				+3.1
2,764,856	+				-0.8
2,764,856	+				-2.5
2,764,856	+				-0.2
2,764,856	+				-1.8
2,764,857	-				-1.3
2,764,857	-				+0.2
2,764,857	-				-0.2
2,764,857	-				-2.1
2,764,857	-				-0.6
2,765,138	+		DZA65_RS12895	0.51	-1.2
2,765,155	+		DZA65_RS12895	0.54	+0.6
2,765,155	+		DZA65_RS12895	0.54	+0.6
2,765,340	-		DZA65_RS12895	0.88	-1.1
2,765,368	+				+0.6
2,765,396	+				-1.3
2,765,396	+				-0.5
2,765,397	-				-1.8
2,765,397	-				+0.4
2,765,397	-				-0.0
2,765,457	+				+0.7
2,765,457	+				-1.0
2,765,457	+				+0.5
2,765,457	+				-0.6
2,765,457	+				+0.2
2,765,457	+				-0.2
2,765,457	+				-0.4
2,765,457	+				-0.8
2,765,457	+				+0.2
2,765,457	+				-0.6
2,765,458	-				+0.2
2,765,458	-				-2.1
2,765,458	-				-1.3
2,765,458	-				-0.3
2,765,458	-				-1.6
2,765,463	+				+0.3
2,765,463	+				-0.1
2,765,463	+				+0.6
2,765,464	-				-1.6
2,765,464	-				-0.3
2,765,508	+				+0.2
2,765,508	+				+0.0
2,765,509	-				+0.2
2,765,509	-				-0.4
2,765,509	-				+0.6
2,765,509	-				-2.9
2,765,509	-				-0.3
2,765,509	-				+0.5
2,765,509	-				+0.5
2,765,513	+				-0.3
2,765,513	+				+0.4
2,765,514	-				-0.6
2,765,514	-				+0.3
2,765,546	+				-1.3
2,765,546	+				+0.6
2,765,547	-				+0.4
2,765,547	-				-2.9
2,765,600	+				+1.9
2,765,600	+				-0.2
2,765,601	-				+0.1
2,765,623	+				-0.3
2,765,624	-				-1.6
2,765,655	+				-0.4
2,765,656	-				+0.2
2,765,665	+				+0.2
2,765,675	+		DZA65_RS22925	0.10	-0.3
2,765,675	+		DZA65_RS22925	0.10	-1.3
2,765,676	-		DZA65_RS22925	0.11	-0.6
2,765,685	-		DZA65_RS22925	0.13	-0.4
2,765,685	-		DZA65_RS22925	0.13	+1.1
2,765,702	+		DZA65_RS22925	0.17	-0.3
2,765,738	-		DZA65_RS22925	0.25	+0.6
2,765,774	+		DZA65_RS22925	0.33	+1.5
2,765,775	-		DZA65_RS22925	0.33	-0.7
2,765,777	+		DZA65_RS22925	0.34	+0.5
2,765,777	+		DZA65_RS22925	0.34	-0.8
2,765,777	+		DZA65_RS22925	0.34	-1.3
2,765,777	+		DZA65_RS22925	0.34	+0.9
2,765,777	+		DZA65_RS22925	0.34	+0.4
2,765,778	-		DZA65_RS22925	0.34	-0.5
2,765,781	-		DZA65_RS22925	0.35	-1.2
2,765,781	-		DZA65_RS22925	0.35	-0.8
2,765,781	-		DZA65_RS22925	0.35	-1.0
2,765,781	-		DZA65_RS22925	0.35	-0.6
2,765,786	+		DZA65_RS22925	0.36	-1.3
2,765,792	+		DZA65_RS22925	0.37	+0.5
2,765,801	+		DZA65_RS22925	0.39	+0.2
2,765,802	-		DZA65_RS22925	0.40	+0.1
2,765,802	-		DZA65_RS22925	0.40	+0.2
2,765,803	+		DZA65_RS22925	0.40	-0.9
2,765,825	-		DZA65_RS22925	0.45	-1.3
2,765,852	+		DZA65_RS22925	0.51	-0.4
2,765,852	+		DZA65_RS22925	0.51	-1.1
2,765,852	+		DZA65_RS22925	0.51	-1.8
2,765,852	+		DZA65_RS22925	0.51	-0.1
2,765,853	-		DZA65_RS22925	0.51	-1.6
2,765,853	-		DZA65_RS22925	0.51	-0.6
2,765,882	-		DZA65_RS22925	0.58	+0.2
2,765,935	+		DZA65_RS22925	0.70	-0.0
2,765,935	+		DZA65_RS22925	0.70	-0.2
2,765,935	+		DZA65_RS22925	0.70	-1.8
2,765,936	-		DZA65_RS22925	0.70	-0.2
2,765,939	+		DZA65_RS22925	0.71	-1.8
2,765,939	+		DZA65_RS22925	0.71	-0.8
2,765,940	-		DZA65_RS22925	0.71	+1.1
2,765,940	-		DZA65_RS22925	0.71	-0.3
2,765,940	-		DZA65_RS22925	0.71	+1.1
2,765,945	-		DZA65_RS22925	0.72	-0.6
2,765,945	-		DZA65_RS22925	0.72	-1.4
2,765,945	-		DZA65_RS22925	0.72	-0.3
2,765,948	+		DZA65_RS22925	0.73	+1.2
2,765,948	+		DZA65_RS22925	0.73	-0.8
2,765,948	+		DZA65_RS22925	0.73	-1.8
2,765,948	+		DZA65_RS22925	0.73	-1.8
2,765,949	-		DZA65_RS22925	0.73	+0.0
2,765,949	-		DZA65_RS22925	0.73	+0.8
2,765,970	-		DZA65_RS22925	0.78	-1.6
2,765,970	-		DZA65_RS22925	0.78	-0.8
2,766,000	+		DZA65_RS22925	0.85	-0.8
2,766,000	+		DZA65_RS22925	0.85	+1.8
2,766,001	-		DZA65_RS22925	0.85	-0.2
2,766,010	-		DZA65_RS22925	0.87	-0.6
2,766,057	+				-0.6
2,766,057	+				+0.5
2,766,065	+				-1.3
2,766,079	+				-0.3
2,766,080	-				-0.0
2,766,080	-				+1.2
2,766,212	+				-0.3
2,766,223	+				+1.4
2,766,255	+				-0.2
2,766,258	+				-0.0
2,766,258	+				-0.9
2,766,259	-				+0.4
2,766,259	-				-0.1
2,766,262	+				+0.2
2,766,262	+				-1.8
2,766,262	+				-2.1
2,766,262	+				-0.6
2,766,263	-				+0.7
2,766,263	-				-0.8
2,766,264	+				-1.8
2,766,265	-				+1.2
2,766,265	-				+1.1
2,766,265	-				-0.3
2,766,265	-				-0.4
2,766,265	-				+1.1
2,766,265	-				-1.5
2,766,265	-				+1.1
2,766,277	+				-1.3
2,766,278	-				+0.2
2,766,308	+				-0.8
2,766,309	-				+0.2
2,766,309	-				+0.0
2,766,309	-				+0.8
2,766,309	-				-0.1
2,766,311	+				-0.2
2,766,316	+				-0.2
2,766,332	-				+0.4
2,766,804	-				+0.3
2,766,825	-				+0.0
2,766,825	-				+0.1
2,766,837	-				-0.3
2,766,850	-				-2.9
2,766,871	-				-0.0
2,766,883	-				+0.8
2,766,922	+				-0.9
2,766,922	+				+0.7
2,766,922	+				-1.8
2,766,923	-				-0.3
2,766,923	-				-2.3
2,766,944	-				-1.5
2,766,950	-				+0.1
2,766,989	+				-1.9
2,766,989	+				+0.9
2,766,989	+				-1.8
2,766,991	+				+0.5
2,766,991	+				-0.1
2,766,991	+				+0.1
2,766,991	+				-0.7
2,766,991	+				-1.7
2,766,991	+				+0.4
2,766,992	-				-0.3
2,766,992	-				+0.6
2,766,996	-				-0.5
2,767,010	+				-0.6
2,767,026	-				-0.1
2,767,035	-				-0.2
2,767,035	-				-0.7
2,767,035	-				-0.5
2,767,035	-				-1.2
2,767,039	+				+0.2
2,767,040	-				+0.0
2,767,040	-				+1.2
2,767,040	-				+1.2
2,767,044	+				-1.2
2,767,044	+				-0.1
2,767,044	+				-0.9
2,767,045	-				+0.1
2,767,045	-				+0.7
2,767,045	-				+0.4
2,767,045	-				+0.0
2,767,045	-				+0.7
2,767,045	-				+0.1
2,767,046	+				-3.1
2,767,046	+				+0.5
2,767,046	+				+0.7
2,767,046	+				+0.2
2,767,046	+				-0.3
2,767,046	+				-2.3
2,767,046	+				-0.9
2,767,046	+				-0.6
2,767,047	-				-1.0
2,767,047	-				+0.2
2,767,047	-				+0.2
2,767,047	-				-0.9
2,767,047	-				+0.8
2,767,047	-				+0.5
2,767,047	-				-0.1
2,767,052	+				-0.9
2,767,053	-				+0.5
2,767,053	-				+0.4
2,767,053	-				-0.9
2,767,055	+				-0.1
2,767,055	+				-1.1
2,767,055	+				-0.2
2,767,055	+				-1.0
2,767,055	+				-0.6
2,767,055	+				-1.6
2,767,055	+				-1.1
2,767,056	-				-0.2