Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21610

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,670,931	+				-0.5
4,670,931	+				-0.8
4,670,931	+				-1.8
4,670,931	+				+1.2
4,670,932	-				-1.1
4,670,932	-				+0.8
4,670,932	-				+0.7
4,670,932	-				+0.8
4,670,932	-				-0.3
4,670,984	+				+1.7
4,670,985	-				+0.5
4,671,003	+				-0.5
4,671,004	-				-0.2
4,671,004	-				+0.3
4,671,004	-				+0.9
4,671,011	+				-0.2
4,671,011	+				+2.1
4,671,012	-				-1.6
4,671,018	+				-1.3
4,671,018	+				-1.1
4,671,018	+				-1.8
4,671,019	-				+0.4
4,671,019	-				-2.2
4,671,030	+				-2.6
4,671,031	-				+0.6
4,671,031	-				-0.5
4,671,031	-				+0.9
4,671,031	-				+2.5
4,671,058	+				-0.2
4,671,059	-				+0.7
4,671,059	-				-0.4
4,671,069	-				-2.6
4,671,069	-				+0.4
4,671,075	-				-0.2
4,671,075	-				-0.5
4,671,077	+				-0.2
4,671,077	+				-1.3
4,671,077	+				-1.9
4,671,077	+				-1.6
4,671,077	+				+0.3
4,671,077	+				+0.0
4,671,077	+				-0.5
4,671,078	-				-0.5
4,671,078	-				-0.1
4,671,078	-				+0.2
4,671,078	-				+0.4
4,671,078	-				-2.7
4,671,078	-				-0.7
4,671,081	+				-3.2
4,671,081	+				-1.2
4,671,081	+				+0.2
4,671,081	+				+0.9
4,671,081	+				-3.3
4,671,081	+				-1.1
4,671,082	-				-2.3
4,671,082	-				-0.2
4,671,082	-				-2.8
4,671,082	-				-0.3
4,671,085	-				+0.5
4,671,085	-				-0.2
4,671,085	-				-0.6
4,671,090	+				-1.6
4,671,091	-				-1.2
4,671,093	+				-1.8
4,671,093	+				-1.1
4,671,093	+				+0.2
4,671,093	+				-0.1
4,671,093	+				-0.6
4,671,094	-				+1.1
4,671,094	-				-1.3
4,671,094	-				-0.5
4,671,094	-				+1.4
4,671,094	-				+0.1
4,671,094	-				-0.2
4,671,097	+				+1.2
4,671,100	+				-1.7
4,671,101	-				+0.4
4,671,101	-				-0.1
4,671,109	+				-0.7
4,671,109	+				-0.5
4,671,110	-				-0.5
4,671,113	+				-0.3
4,671,113	+				-0.3
4,671,116	+				-2.3
4,671,125	+				-1.0
4,671,125	+				-2.1
4,671,126	-				-0.6
4,671,129	+				-2.6
4,671,130	-				-0.5
4,671,130	-				-2.1
4,671,130	-				-0.3
4,671,132	+				-1.1
4,671,133	-				-0.0
4,671,142	-				-1.1
4,671,145	+				-2.1
4,671,145	+				-2.5
4,671,146	-				-0.6
4,671,146	-				+0.0
4,671,146	-				-0.5
4,671,146	-				-1.1
4,671,146	-				-0.9
4,671,146	-				+0.8
4,671,146	-				-1.2
4,671,146	-				-1.5
4,671,146	-				-2.1
4,671,148	+				-1.3
4,671,148	+				-0.5
4,671,149	-				-0.4
4,671,149	-				-1.8
4,671,157	+				-0.3
4,671,157	+				-3.3
4,671,157	+				-1.0
4,671,157	+				+0.5
4,671,157	+				-2.8
4,671,158	-				-3.2
4,671,158	-				-0.8
4,671,158	-				+0.2
4,671,161	+				-1.6
4,671,161	+				+2.2
4,671,161	+				+0.5
4,671,161	+				+0.5
4,671,162	-				-1.9
4,671,162	-				-0.1
4,671,162	-				-1.9
4,671,317	+		DZA65_RS21605	0.29	-0.5
4,671,317	+		DZA65_RS21605	0.29	-1.5
4,671,317	+		DZA65_RS21605	0.29	-0.9
4,671,317	+		DZA65_RS21605	0.29	-0.7
4,671,317	+		DZA65_RS21605	0.29	+0.3
4,671,317	+		DZA65_RS21605	0.29	-1.1
4,671,317	+		DZA65_RS21605	0.29	-2.3
4,671,317	+		DZA65_RS21605	0.29	-2.9
4,671,318	-		DZA65_RS21605	0.29	-0.1
4,671,318	-		DZA65_RS21605	0.29	-1.0
4,671,318	-		DZA65_RS21605	0.29	+0.3
4,671,318	-		DZA65_RS21605	0.29	+0.3
4,671,318	-		DZA65_RS21605	0.29	-0.0
4,671,340	+		DZA65_RS21605	0.33	+0.4
4,671,340	+		DZA65_RS21605	0.33	+0.8
4,671,341	-		DZA65_RS21605	0.33	+0.0
4,671,341	-		DZA65_RS21605	0.33	-0.4
4,671,346	+		DZA65_RS21605	0.34	-1.4
4,671,347	-		DZA65_RS21605	0.34	-0.0
4,671,347	-		DZA65_RS21605	0.34	+0.4
4,671,347	-		DZA65_RS21605	0.34	-0.4
4,671,461	+		DZA65_RS21605	0.56	-0.4
4,671,461	+		DZA65_RS21605	0.56	-0.0
4,671,462	-		DZA65_RS21605	0.56	-0.4
4,671,462	-		DZA65_RS21605	0.56	-0.7
4,671,462	-		DZA65_RS21605	0.56	-1.3
4,671,462	-		DZA65_RS21605	0.56	-0.1
4,671,462	-		DZA65_RS21605	0.56	+0.2
4,671,462	-		DZA65_RS21605	0.56	-0.6
4,671,462	-		DZA65_RS21605	0.56	+0.2
4,671,671	-				+0.4
4,671,671	-				+0.9
4,671,708	+				-0.7
4,671,708	+				-0.4
4,671,709	-				+0.6
4,671,709	-				-0.3
4,671,709	-				-0.5
4,671,709	-				-0.3
4,671,716	+				+0.5
4,671,716	+				-0.1
4,671,716	+				+0.1
4,671,716	+				+0.3
4,671,716	+				-2.1
4,671,716	+				+0.5
4,671,717	-				-0.5
4,671,717	-				-0.5
4,671,717	-				-2.5
4,671,717	-				+1.3
4,671,717	-				+1.1
4,671,717	-				-1.6
4,671,717	-				+1.1
4,671,721	+				-1.8
4,671,721	+				-1.9
4,671,721	+				-1.4
4,671,721	+				+0.7
4,671,721	+				+0.0
4,671,722	-				+0.7
4,671,722	-				+0.6
4,671,722	-				+0.5
4,671,722	-				-0.6
4,671,722	-				-2.6
4,671,722	-				-1.1
4,671,734	+				+0.3
4,671,735	-				+0.4
4,671,735	-				+0.0
4,671,742	+				-2.3
4,671,742	+				+0.1
4,671,743	-				-0.3
4,671,743	-				-1.3
4,671,743	-				-2.1
4,671,743	-				-2.3
4,671,743	-				-0.8
4,671,743	-				-1.4
4,671,743	-				-0.1
4,671,760	-				+2.0
4,671,760	-				-0.2
4,671,760	-				-0.8
4,671,773	+				-0.5
4,671,773	+				-0.5
4,671,773	+				+0.2
4,671,773	+				+0.5
4,671,773	+				-0.7
4,671,773	+				-0.4
4,671,774	-				+0.5
4,671,774	-				+0.2
4,671,774	-				-0.1
4,671,774	-				-0.1
4,671,774	-				+1.2
4,671,797	+				-0.3
4,671,797	+				+1.8
4,671,797	+				-0.1
4,671,798	-				-0.7
4,671,798	-				+3.0
4,671,798	-				-0.6
4,671,802	+				-0.3
4,671,802	+				+1.0
4,671,803	-				-1.1
4,671,803	-				+0.3
4,671,803	-				+0.3
4,671,803	-				+0.2
4,671,803	-				-0.7
4,671,836	+				-0.1
4,671,837	-				-1.1
4,671,837	-				-3.5
4,671,837	-				-1.1
4,671,846	+				+0.1
4,671,846	+				-0.1
4,671,846	+				-0.1
4,671,846	+				+0.3
4,671,846	+				-0.2
4,671,847	-				+0.1
4,671,860	-				+0.5
4,671,860	-				-2.6
4,671,870	+				+1.0
4,671,870	+				-0.2
4,671,871	-				-0.3
4,671,871	-				+1.0
4,671,871	-				-0.6
4,671,871	-				+1.2
4,671,871	-				+0.0
4,671,871	-				-0.2
4,671,871	-				-1.1
4,671,878	-				-1.3
4,671,878	-				-2.5
4,671,895	-				-3.2
4,671,895	-				+0.2
4,671,898	+				-1.4
4,671,898	+				-2.8
4,671,898	+				-0.6
4,671,899	-				-4.1
4,671,899	-				-1.8
4,671,899	-				-2.1
4,671,899	-				-3.9
4,671,899	-				-2.1
4,671,899	-				-0.7
4,671,899	-				-2.9
4,671,910	-				-1.5
4,672,017	-		DZA65_RS21610	0.16	-2.3
4,672,087	-		DZA65_RS21610	0.26	-3.1
4,672,087	-		DZA65_RS21610	0.26	-2.5
4,672,087	-		DZA65_RS21610	0.26	+0.3
4,672,192	+		DZA65_RS21610	0.41	-0.1
4,672,193	-		DZA65_RS21610	0.41	-0.2
4,672,193	-		DZA65_RS21610	0.41	-2.8
4,672,193	-		DZA65_RS21610	0.41	-1.1
4,672,193	-		DZA65_RS21610	0.41	-2.5
4,672,400	-		DZA65_RS21610	0.71	-1.4
4,672,400	-		DZA65_RS21610	0.71	-2.1
4,672,503	+				-1.5
4,672,503	+		DZA65_RS21610	0.86	-3.0
4,672,503	+		DZA65_RS21610	0.86	-2.1
4,672,503	+		DZA65_RS21610	0.86	-3.6
4,672,503	+		DZA65_RS21610	0.86	-0.5
4,672,503	+		DZA65_RS21610	0.86	-2.1
4,672,503	+		DZA65_RS21610	0.86	-1.1
4,672,503	+				-1.5
4,672,503	+		DZA65_RS21610	0.86	-2.5
4,672,503	+		DZA65_RS21610	0.86	+0.1
4,672,504	-		DZA65_RS21610	0.86	-2.3
4,672,504	-		DZA65_RS21610	0.86	-1.5
4,672,504	-		DZA65_RS21610	0.86	-3.2
4,672,504	-		DZA65_RS21610	0.86	-1.5
4,672,504	-		DZA65_RS21610	0.86	-1.5
4,672,504	-				-1.1
4,672,504	-		DZA65_RS21610	0.86	-2.6
4,672,504	-		DZA65_RS21610	0.86	-1.5
4,672,504	-		DZA65_RS21610	0.86	-0.2
4,672,504	-		DZA65_RS21610	0.86	-3.6
4,672,504	-				+0.5
4,672,504	-		DZA65_RS21610	0.86	-2.5
4,672,504	-		DZA65_RS21610	0.86	-2.1
4,672,558	-				-2.5
4,672,579	+				+1.5
4,672,580	-				-1.5
4,672,618	+				+0.8
4,672,618	+				+0.5
4,672,618	+				-0.1
4,672,618	+				-0.5
4,672,618	+				+1.2
4,672,618	+				-1.1
4,672,618	+				-0.0
4,672,618	+				-1.9
4,672,618	+				+0.1
4,672,619	-				+0.1
4,672,619	-				+2.5
4,672,619	-				+0.8
4,672,619	-				-0.2
4,672,619	-				+0.4
4,672,619	-				+0.7
4,672,634	-				+0.3
4,672,651	+				-1.8
4,672,651	+				-0.7
4,672,812	+		DZA65_RS21615	0.14	-1.3
4,672,985	+		DZA65_RS21615	0.27	-0.5
4,673,035	+		DZA65_RS21615	0.30	+1.5
4,673,035	+		DZA65_RS21615	0.30	+0.5
4,673,036	-		DZA65_RS21615	0.30	-0.1
4,673,036	-		DZA65_RS21615	0.30	+0.1
4,673,048	+		DZA65_RS21615	0.31	+1.7
4,673,049	-		DZA65_RS21615	0.31	-1.1
4,673,049	-		DZA65_RS21615	0.31	-0.7
4,673,086	+		DZA65_RS21615	0.34	+0.8
4,673,406	+		DZA65_RS21615	0.57	-0.3
4,673,409	+		DZA65_RS21615	0.58	+0.3
4,673,519	+		DZA65_RS21615	0.66	+0.4
4,673,519	+		DZA65_RS21615	0.66	-1.8