Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21460

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,639,662	+				+0.3
4,639,669	+				+0.9
4,639,731	+				+0.5
4,639,731	+				+0.2
4,639,754	+				+1.2
4,639,754	+				+0.2
4,639,754	+				+0.5
4,639,755	-				+0.7
4,639,755	-				-1.7
4,639,755	-				+0.5
4,639,755	-				-0.9
4,639,755	-				-0.3
4,639,755	-				+1.8
4,639,784	+				-2.1
4,639,884	+		DZA65_RS21455	0.19	-1.3
4,639,884	+		DZA65_RS21455	0.19	-0.4
4,639,885	-		DZA65_RS21455	0.19	+0.2
4,639,885	-		DZA65_RS21455	0.19	-1.7
4,639,918	+		DZA65_RS21455	0.23	+0.1
4,639,918	+		DZA65_RS21455	0.23	-0.6
4,639,918	+		DZA65_RS21455	0.23	+0.9
4,639,918	+		DZA65_RS21455	0.23	-0.3
4,639,918	+		DZA65_RS21455	0.23	-1.2
4,639,918	+				+1.9
4,639,918	+		DZA65_RS21455	0.23	-1.5
4,639,918	+		DZA65_RS21455	0.23	+0.2
4,639,919	-		DZA65_RS21455	0.23	-1.5
4,639,919	-		DZA65_RS21455	0.23	-2.3
4,639,919	-		DZA65_RS21455	0.23	+0.3
4,639,919	-		DZA65_RS21455	0.23	-0.2
4,639,919	-		DZA65_RS21455	0.23	-0.1
4,639,919	-		DZA65_RS21455	0.23	-0.0
4,639,919	-		DZA65_RS21455	0.23	+1.3
4,639,920	+		DZA65_RS21455	0.24	-0.5
4,639,967	+		DZA65_RS21455	0.30	+1.1
4,639,968	-		DZA65_RS21455	0.30	+0.7
4,639,986	+		DZA65_RS21455	0.33	+1.2
4,639,986	+		DZA65_RS21455	0.33	+0.8
4,639,986	+		DZA65_RS21455	0.33	-0.1
4,639,986	+		DZA65_RS21455	0.33	+1.1
4,640,034	+		DZA65_RS21455	0.39	+0.7
4,640,034	+		DZA65_RS21455	0.39	+1.0
4,640,034	+		DZA65_RS21455	0.39	-1.0
4,640,129	-		DZA65_RS21455	0.52	-0.4
4,640,230	+		DZA65_RS21455	0.66	-0.6
4,640,230	+		DZA65_RS21455	0.66	-1.4
4,640,231	-		DZA65_RS21455	0.66	+0.5
4,640,231	-		DZA65_RS21455	0.66	+1.5
4,640,231	-		DZA65_RS21455	0.66	-0.5
4,640,245	+		DZA65_RS21455	0.68	+0.7
4,640,245	+		DZA65_RS21455	0.68	+1.6
4,640,245	+		DZA65_RS21455	0.68	+0.1
4,640,245	+		DZA65_RS21455	0.68	-2.3
4,640,245	+		DZA65_RS21455	0.68	+0.9
4,640,245	+		DZA65_RS21455	0.68	+0.5
4,640,245	+		DZA65_RS21455	0.68	+1.0
4,640,245	+		DZA65_RS21455	0.68	+0.0
4,640,246	-		DZA65_RS21455	0.68	-0.9
4,640,246	-		DZA65_RS21455	0.68	-0.7
4,640,246	-		DZA65_RS21455	0.68	+0.7
4,640,246	-		DZA65_RS21455	0.68	+0.0
4,640,246	-		DZA65_RS21455	0.68	-0.6
4,640,246	-		DZA65_RS21455	0.68	+0.1
4,640,247	+		DZA65_RS21455	0.68	+0.5
4,640,247	+		DZA65_RS21455	0.68	+1.5
4,640,247	+		DZA65_RS21455	0.68	-2.1
4,640,247	+		DZA65_RS21455	0.68	-0.0
4,640,247	+		DZA65_RS21455	0.68	-0.2
4,640,247	+		DZA65_RS21455	0.68	-0.8
4,640,247	+		DZA65_RS21455	0.68	+0.8
4,640,248	-		DZA65_RS21455	0.68	+1.5
4,640,248	-		DZA65_RS21455	0.68	+0.4
4,640,248	-		DZA65_RS21455	0.68	-1.8
4,640,248	-		DZA65_RS21455	0.68	+0.8
4,640,248	-		DZA65_RS21455	0.68	-0.5
4,640,248	-		DZA65_RS21455	0.68	+0.4
4,640,248	-		DZA65_RS21455	0.68	-0.0
4,640,339	-		DZA65_RS21455	0.81	+2.1
4,640,400	+		DZA65_RS21455	0.89	+0.3
4,640,400	+		DZA65_RS21455	0.89	-1.2
4,640,401	-		DZA65_RS21455	0.89	-0.4
4,640,401	-				-0.5
4,640,417	+				-0.1
4,640,417	+				+1.0
4,640,417	+				+0.1
4,640,417	+				+0.3
4,640,417	+				+0.1
4,640,418	-				-0.4
4,640,560	-				-0.2
4,640,560	-				-0.6
4,640,560	-				-1.2
4,640,560	-				+0.5
4,640,560	-				+0.2
4,640,566	-				-0.2
4,640,580	+				+0.7
4,640,580	+				+0.4
4,640,581	-				-0.1
4,640,581	-				+0.1
4,640,581	-				-0.5
4,640,592	+				+0.1
4,640,593	-				-0.5
4,640,687	+				-0.8
4,640,687	+				+0.3
4,640,687	+				-0.7
4,640,687	+				-0.6
4,640,688	-				+0.5
4,640,701	+				-0.7
4,640,701	+				+0.5
4,640,701	+				+1.5
4,640,701	+				+0.4
4,640,701	+				-1.7
4,640,702	-				+1.3
4,640,702	-				+0.5
4,640,702	-				+1.2
4,640,726	+				-0.1
4,640,726	+				-3.0
4,640,726	+				+0.2
4,640,727	-				-0.2
4,640,728	+				+0.9
4,640,728	+				-0.6
4,640,728	+				-1.1
4,640,728	+				+0.9
4,640,728	+				-2.1
4,640,728	+				+0.1
4,640,728	+				-1.5
4,640,729	-				-0.1
4,640,729	-				-0.4
4,640,775	-		DZA65_RS21460	0.13	+0.4
4,640,780	+		DZA65_RS21460	0.14	-2.3
4,640,780	+		DZA65_RS21460	0.14	+0.9
4,640,780	+		DZA65_RS21460	0.14	-0.3
4,640,780	+		DZA65_RS21460	0.14	+0.5
4,640,780	+		DZA65_RS21460	0.14	-0.4
4,640,951	+		DZA65_RS21460	0.33	-0.0
4,640,980	+		DZA65_RS21460	0.36	-0.1
4,640,980	+		DZA65_RS21460	0.36	+1.4
4,640,980	+		DZA65_RS21460	0.36	+0.9
4,640,980	+		DZA65_RS21460	0.36	-0.2
4,640,980	+		DZA65_RS21460	0.36	-0.4
4,640,980	+		DZA65_RS21460	0.36	-0.1
4,640,981	-		DZA65_RS21460	0.36	-0.4
4,640,981	-		DZA65_RS21460	0.36	+1.7
4,640,981	-		DZA65_RS21460	0.36	-1.5
4,640,981	-		DZA65_RS21460	0.36	-0.1
4,640,981	-		DZA65_RS21460	0.36	+0.8
4,641,113	+		DZA65_RS21460	0.51	-0.0
4,641,114	-				+2.8
4,641,160	+		DZA65_RS21460	0.56	+0.5
4,641,160	+		DZA65_RS21460	0.56	-0.9
4,641,160	+		DZA65_RS21460	0.56	-0.2
4,641,160	+		DZA65_RS21460	0.56	-0.8
4,641,160	+		DZA65_RS21460	0.56	+0.5
4,641,160	+		DZA65_RS21460	0.56	-0.0
4,641,160	+		DZA65_RS21460	0.56	+2.0
4,641,160	+		DZA65_RS21460	0.56	+1.7
4,641,160	+		DZA65_RS21460	0.56	-0.9
4,641,160	+		DZA65_RS21460	0.56	-0.7
4,641,160	+		DZA65_RS21460	0.56	+0.6
4,641,160	+		DZA65_RS21460	0.56	+0.2
4,641,160	+		DZA65_RS21460	0.56	-0.6
4,641,160	+		DZA65_RS21460	0.56	-2.1
4,641,160	+		DZA65_RS21460	0.56	-0.2
4,641,160	+		DZA65_RS21460	0.56	-0.1
4,641,160	+		DZA65_RS21460	0.56	-1.5
4,641,160	+		DZA65_RS21460	0.56	-1.1
4,641,160	+				+0.5
4,641,160	+		DZA65_RS21460	0.56	-1.8
4,641,160	+		DZA65_RS21460	0.56	+1.5
4,641,160	+		DZA65_RS21460	0.56	-0.2
4,641,160	+		DZA65_RS21460	0.56	-1.1
4,641,160	+		DZA65_RS21460	0.56	+0.6
4,641,160	+		DZA65_RS21460	0.56	-1.4
4,641,160	+				+0.2
4,641,161	-		DZA65_RS21460	0.56	-0.5
4,641,161	-		DZA65_RS21460	0.56	-0.7
4,641,161	-		DZA65_RS21460	0.56	-0.0
4,641,161	-		DZA65_RS21460	0.56	-0.9
4,641,161	-		DZA65_RS21460	0.56	+1.2
4,641,161	-		DZA65_RS21460	0.56	+0.3
4,641,161	-		DZA65_RS21460	0.56	-0.0
4,641,161	-		DZA65_RS21460	0.56	-0.9
4,641,161	-		DZA65_RS21460	0.56	-2.8
4,641,161	-		DZA65_RS21460	0.56	+0.5
4,641,161	-		DZA65_RS21460	0.56	+2.8
4,641,161	-		DZA65_RS21460	0.56	-0.6
4,641,161	-		DZA65_RS21460	0.56	-1.2
4,641,161	-		DZA65_RS21460	0.56	-0.9
4,641,161	-		DZA65_RS21460	0.56	-0.6
4,641,161	-		DZA65_RS21460	0.56	-0.8
4,641,161	-		DZA65_RS21460	0.56	-0.5
4,641,161	-		DZA65_RS21460	0.56	+0.0
4,641,161	-		DZA65_RS21460	0.56	-0.2
4,641,161	-		DZA65_RS21460	0.56	+0.3
4,641,161	-		DZA65_RS21460	0.56	+0.9
4,641,161	-		DZA65_RS21460	0.56	-0.7
4,641,161	-		DZA65_RS21460	0.56	+0.9
4,641,161	-		DZA65_RS21460	0.56	+0.0
4,641,212	+		DZA65_RS21460	0.62	+0.1
4,641,213	-		DZA65_RS21460	0.62	-2.1
4,641,236	-		DZA65_RS21460	0.65	-0.4
4,641,367	+		DZA65_RS21460	0.79	-0.1
4,641,373	+				-0.2
4,641,373	+		DZA65_RS21460	0.80	-0.6
4,641,373	+		DZA65_RS21460	0.80	+1.0
4,641,419	+		DZA65_RS21460	0.85	-0.2
4,641,419	+		DZA65_RS21460	0.85	-1.5
4,641,419	+		DZA65_RS21460	0.85	+0.2
4,641,419	+		DZA65_RS21460	0.85	+0.4
4,641,419	+		DZA65_RS21460	0.85	+0.2
4,641,419	+		DZA65_RS21460	0.85	-1.1
4,641,420	-		DZA65_RS21460	0.85	-2.0
4,641,420	-		DZA65_RS21460	0.85	-1.7
4,641,420	-		DZA65_RS21460	0.85	-0.7
4,641,420	-		DZA65_RS21460	0.85	-0.3
4,641,420	-		DZA65_RS21460	0.85	-0.2
4,641,420	-		DZA65_RS21460	0.85	+0.3
4,641,420	-		DZA65_RS21460	0.85	-0.2
4,641,482	+				+0.0
4,641,495	+				-0.1
4,641,495	+				-3.1
4,641,495	+				-0.2
4,641,495	+				-1.5
4,641,504	+				-0.1
4,641,504	+				-0.4
4,641,505	-				-0.0
4,641,551	+				+0.7
4,641,551	+				-0.4
4,641,552	-				-0.2
4,641,552	-				+0.5
4,641,552	-				+1.9
4,641,557	+				-0.3
4,641,558	-				-1.3
4,641,573	+				-0.7
4,641,574	-				+0.2
4,641,574	-				-2.3
4,641,666	+				-2.0
4,641,666	+				+0.5
4,641,666	+				-1.1
4,641,667	-				+0.4
4,641,667	-				+1.9
4,641,667	-				-1.8
4,641,667	-				+0.1
4,641,739	-				-0.9
4,641,760	+				+0.5
4,641,767	+				+1.5
4,641,767	+				-1.0
4,641,767	+				-0.1
4,641,767	+				-2.2
4,641,767	+				-0.5
4,641,767	+				-0.4
4,641,767	+				+0.0
4,641,768	-				+0.3
4,641,768	-				-0.3
4,641,768	-				+0.0
4,641,824	-				+1.3
4,641,849	+				+1.4
4,641,850	-				-0.1
4,641,850	-				-0.1
4,641,893	+				+0.9
4,641,894	-				-2.5
4,641,894	-				-0.3
4,641,894	-				+0.4
4,641,993	-				+0.7
4,642,113	-				+0.4
4,642,113	-				+1.0
4,642,113	-				-0.7
4,642,261	+		DZA65_RS21465	0.15	-0.3
4,642,261	+		DZA65_RS21465	0.15	+0.3
4,642,261	+		DZA65_RS21465	0.15	-0.4
4,642,268	+		DZA65_RS21465	0.15	-0.1
4,642,493	+		DZA65_RS21465	0.25	+1.8
4,642,493	+		DZA65_RS21465	0.25	+1.5
4,642,493	+		DZA65_RS21465	0.25	+0.7
4,642,493	+		DZA65_RS21465	0.25	+1.7
4,642,494	-		DZA65_RS21465	0.25	-0.2
4,642,494	-		DZA65_RS21465	0.25	+1.5
4,642,494	-		DZA65_RS21465	0.25	+0.3
4,642,494	-		DZA65_RS21465	0.25	-0.6
4,642,494	-		DZA65_RS21465	0.25	-0.4
4,642,529	+		DZA65_RS21465	0.26	-0.6
4,642,529	+		DZA65_RS21465	0.26	-0.7
4,642,529	+		DZA65_RS21465	0.26	-2.3
4,642,529	+		DZA65_RS21465	0.26	+0.6
4,642,530	-		DZA65_RS21465	0.26	-0.7
4,642,530	-		DZA65_RS21465	0.26	+0.5
4,642,530	-		DZA65_RS21465	0.26	-0.3
4,642,530	-		DZA65_RS21465	0.26	+0.0
4,642,530	-		DZA65_RS21465	0.26	-1.8