Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21375

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,623,740	+		DZA65_RS21365	0.69	-0.7
4,623,740	+		DZA65_RS21365	0.69	-0.2
4,623,760	+		DZA65_RS21365	0.71	+1.8
4,623,760	+		DZA65_RS21365	0.71	+0.4
4,623,760	+		DZA65_RS21365	0.71	-0.3
4,623,761	-		DZA65_RS21365	0.71	-0.3
4,623,761	-		DZA65_RS21365	0.71	-1.1
4,623,786	-		DZA65_RS21365	0.72	-0.4
4,623,786	-		DZA65_RS21365	0.72	-0.1
4,623,828	+		DZA65_RS21365	0.75	-0.6
4,623,828	+		DZA65_RS21365	0.75	-1.1
4,623,840	+		DZA65_RS21365	0.76	+0.5
4,623,840	+		DZA65_RS21365	0.76	-0.5
4,623,840	+		DZA65_RS21365	0.76	-0.5
4,623,840	+		DZA65_RS21365	0.76	-0.8
4,623,840	+		DZA65_RS21365	0.76	+0.5
4,623,840	+		DZA65_RS21365	0.76	-1.6
4,623,840	+		DZA65_RS21365	0.76	-0.2
4,623,840	+		DZA65_RS21365	0.76	-2.8
4,623,840	+		DZA65_RS21365	0.76	+1.3
4,623,840	+		DZA65_RS21365	0.76	-0.3
4,623,841	-		DZA65_RS21365	0.76	-3.0
4,623,841	-		DZA65_RS21365	0.76	-0.5
4,623,841	-		DZA65_RS21365	0.76	-0.0
4,623,841	-		DZA65_RS21365	0.76	+2.5
4,623,841	-		DZA65_RS21365	0.76	-1.2
4,623,841	-		DZA65_RS21365	0.76	+0.4
4,623,880	+		DZA65_RS21365	0.79	+0.3
4,623,880	+		DZA65_RS21365	0.79	+0.5
4,623,880	+		DZA65_RS21365	0.79	-0.3
4,623,880	+		DZA65_RS21365	0.79	-1.8
4,623,880	+		DZA65_RS21365	0.79	-0.8
4,623,881	-		DZA65_RS21365	0.79	+0.2
4,623,904	-		DZA65_RS21365	0.80	-0.1
4,623,939	+		DZA65_RS21365	0.82	-0.2
4,623,939	+		DZA65_RS21365	0.82	+0.3
4,623,939	+		DZA65_RS21365	0.82	+0.2
4,624,022	+		DZA65_RS21365	0.88	-0.8
4,624,022	+		DZA65_RS21365	0.88	-0.2
4,624,022	+		DZA65_RS21365	0.88	-1.1
4,624,047	+		DZA65_RS21365	0.89	-0.2
4,624,047	+		DZA65_RS21365	0.89	-1.1
4,624,047	+		DZA65_RS21365	0.89	-0.2
4,624,048	-		DZA65_RS21365	0.90	+0.1
4,624,048	-		DZA65_RS21365	0.90	+0.1
4,624,077	+				-1.0
4,624,132	+				+1.7
4,624,133	-				+1.2
4,624,133	-				+0.1
4,624,157	+				-0.2
4,624,157	+				-1.5
4,624,157	+				-0.9
4,624,157	+				-0.3
4,624,157	+				+0.5
4,624,158	-				-1.2
4,624,165	+				-0.2
4,624,165	+				-0.8
4,624,165	+				-1.8
4,624,165	+				+0.7
4,624,165	+				+0.2
4,624,166	-				-0.3
4,624,166	-				+0.6
4,624,166	-				-1.7
4,624,166	-				-0.1
4,624,217	+				-1.0
4,624,217	+				-1.3
4,624,218	-				-0.6
4,624,226	+				-2.5
4,624,226	+				+0.2
4,624,227	-				-0.4
4,624,266	-				-0.5
4,624,266	-				-2.3
4,624,266	-				-0.7
4,624,266	-				-0.6
4,624,271	+				-1.1
4,624,289	+				-1.8
4,624,289	+				-0.7
4,624,290	-				-1.8
4,624,290	-				+1.0
4,624,290	-				-1.0
4,624,332	+		DZA65_RS21370	0.18	-1.7
4,624,333	-		DZA65_RS21370	0.19	-1.7
4,624,357	-		DZA65_RS21370	0.26	-1.4
4,624,365	+		DZA65_RS21370	0.28	-1.5
4,624,366	-		DZA65_RS21370	0.28	-2.5
4,624,366	-		DZA65_RS21370	0.28	-2.8
4,624,366	-		DZA65_RS21370	0.28	-3.1
4,624,367	+		DZA65_RS21370	0.29	-1.5
4,624,367	+		DZA65_RS21370	0.29	-2.3
4,624,367	+		DZA65_RS21370	0.29	-0.1
4,624,367	+		DZA65_RS21370	0.29	-1.5
4,624,367	+		DZA65_RS21370	0.29	+1.5
4,624,367	+		DZA65_RS21370	0.29	-2.6
4,624,367	+		DZA65_RS21370	0.29	-2.4
4,624,367	+		DZA65_RS21370	0.29	+0.9
4,624,367	+		DZA65_RS21370	0.29	-2.3
4,624,367	+		DZA65_RS21370	0.29	-2.6
4,624,367	+		DZA65_RS21370	0.29	-0.2
4,624,367	+		DZA65_RS21370	0.29	-1.6
4,624,368	-		DZA65_RS21370	0.29	-2.3
4,624,368	-		DZA65_RS21370	0.29	-1.1
4,624,368	-		DZA65_RS21370	0.29	-1.0
4,624,368	-		DZA65_RS21370	0.29	+0.4
4,624,368	-		DZA65_RS21370	0.29	-2.9
4,624,368	-		DZA65_RS21370	0.29	+0.2
4,624,368	-		DZA65_RS21370	0.29	-2.5
4,624,368	-		DZA65_RS21370	0.29	+1.0
4,624,368	-		DZA65_RS21370	0.29	-1.5
4,624,368	-		DZA65_RS21370	0.29	-3.7
4,624,368	-		DZA65_RS21370	0.29	-0.3
4,624,368	-		DZA65_RS21370	0.29	-2.4
4,624,420	+		DZA65_RS21370	0.44	-2.5
4,624,420	+		DZA65_RS21370	0.44	-1.8
4,624,420	+		DZA65_RS21370	0.44	-4.0
4,624,420	+		DZA65_RS21370	0.44	+0.2
4,624,421	-		DZA65_RS21370	0.45	-2.2
4,624,421	-		DZA65_RS21370	0.45	-0.8
4,624,421	-		DZA65_RS21370	0.45	-1.3
4,624,482	+		DZA65_RS21370	0.63	-2.7
4,624,482	+		DZA65_RS21370	0.63	-1.7
4,624,482	+		DZA65_RS21370	0.63	-2.6
4,624,483	-		DZA65_RS21370	0.63	-2.6
4,624,483	-		DZA65_RS21370	0.63	-1.9
4,624,527	+		DZA65_RS21370	0.76	-2.1
4,624,559	+		DZA65_RS21370	0.85	-2.4
4,624,559	+		DZA65_RS21370	0.85	-1.8
4,624,570	-		DZA65_RS21370	0.88	-1.1
4,624,611	+				-2.1
4,624,611	+				-2.1
4,624,611	+				-2.0
4,624,612	-				-1.1
4,624,612	-				-2.2
4,624,612	-				-3.5
4,624,612	-				-2.1
4,624,621	+				-2.4
4,624,622	-				-1.1
4,624,622	-				+0.5
4,624,622	-				-2.3
4,624,622	-				+0.2
4,624,630	+				+0.5
4,624,630	+				-1.1
4,624,631	-				+0.7
4,624,645	+				-2.1
4,624,657	+				-2.0
4,624,658	-				+0.8
4,624,658	-				-2.3
4,624,660	+				-1.8
4,624,660	+				-3.7
4,624,660	+				-2.8
4,624,660	+				-3.0
4,624,660	+				+0.0
4,624,660	+				-1.9
4,624,660	+				+0.5
4,624,660	+				-1.8
4,624,660	+				-2.9
4,624,660	+				-2.1
4,624,660	+				-3.1
4,624,660	+				-1.8
4,624,660	+				-1.5
4,624,660	+				-1.0
4,624,660	+				-2.5
4,624,661	-				-2.2
4,624,661	-				+0.1
4,624,661	-				+0.1
4,624,661	-				+0.1
4,624,661	-				+0.5
4,624,661	-				-0.2
4,624,661	-				-0.3
4,624,661	-				-1.4
4,624,664	+				-1.1
4,624,664	+				-1.5
4,624,664	+				-1.8
4,624,665	-				-2.8
4,624,665	-				+0.9
4,624,694	+				-2.0
4,624,741	+				-0.1
4,624,741	+				-1.2
4,624,742	-				-1.4
4,624,742	-				-0.9
4,624,742	-				-0.8
4,624,803	+				-3.7
4,624,803	+				-2.8
4,624,803	+				-1.5
4,624,803	+				-2.2
4,624,803	+				-0.5
4,624,803	+				-1.9
4,624,803	+				+0.5
4,624,803	+				-0.8
4,624,803	+				-1.8
4,624,803	+				-1.5
4,624,803	+				+0.2
4,624,803	+				-2.1
4,624,803	+				-2.0
4,624,803	+				-1.7
4,624,803	+				-0.2
4,624,803	+				-3.0
4,624,804	-				-0.7
4,624,804	-				-2.0
4,624,804	-				-1.9
4,624,804	-				-1.6
4,624,804	-				-2.6
4,624,804	-				+0.2
4,624,833	-		DZA65_RS21375	0.13	-2.9
4,624,883	+		DZA65_RS21375	0.19	-1.9
4,624,884	-		DZA65_RS21375	0.19	-3.3
4,624,889	+		DZA65_RS21375	0.20	-1.5
4,624,957	+		DZA65_RS21375	0.28	-1.8
4,624,957	+		DZA65_RS21375	0.28	-0.5
4,625,062	-		DZA65_RS21375	0.40	-1.3
4,625,062	-		DZA65_RS21375	0.40	+0.5
4,625,120	+		DZA65_RS21375	0.48	-1.8
4,625,149	+		DZA65_RS21375	0.51	-1.8
4,625,149	+		DZA65_RS21375	0.51	-0.6
4,625,156	+		DZA65_RS21375	0.52	-1.1
4,625,156	+		DZA65_RS21375	0.52	-0.5
4,625,156	+		DZA65_RS21375	0.52	-2.3
4,625,156	+		DZA65_RS21375	0.52	-1.8
4,625,157	-		DZA65_RS21375	0.52	-2.4
4,625,157	-		DZA65_RS21375	0.52	-1.7
4,625,157	-		DZA65_RS21375	0.52	+0.7
4,625,157	-		DZA65_RS21375	0.52	-2.2
4,625,159	+		DZA65_RS21375	0.52	-1.1
4,625,160	-		DZA65_RS21375	0.52	-1.3
4,625,197	+		DZA65_RS21375	0.57	-2.3
4,625,197	+		DZA65_RS21375	0.57	-2.8
4,625,197	+		DZA65_RS21375	0.57	-1.4
4,625,198	-		DZA65_RS21375	0.57	+1.5
4,625,226	-		DZA65_RS21375	0.60	-3.0
4,625,229	-		DZA65_RS21375	0.61	-0.3
4,625,229	-		DZA65_RS21375	0.61	-1.5
4,625,229	-		DZA65_RS21375	0.61	-1.1
4,625,229	-		DZA65_RS21375	0.61	-0.8
4,625,239	+		DZA65_RS21375	0.62	-1.9
4,625,239	+		DZA65_RS21375	0.62	-0.3
4,625,239	+		DZA65_RS21375	0.62	-0.4
4,625,239	+		DZA65_RS21375	0.62	-1.2
4,625,239	+		DZA65_RS21375	0.62	-1.8
4,625,239	+		DZA65_RS21375	0.62	-0.8
4,625,239	+		DZA65_RS21375	0.62	-1.9
4,625,239	+		DZA65_RS21375	0.62	-0.9
4,625,240	-		DZA65_RS21375	0.62	-1.3
4,625,240	-		DZA65_RS21375	0.62	-1.1
4,625,240	-		DZA65_RS21375	0.62	-2.0
4,625,240	-		DZA65_RS21375	0.62	-1.0
4,625,240	-		DZA65_RS21375	0.62	-1.4
4,625,240	-		DZA65_RS21375	0.62	-0.3
4,625,240	-		DZA65_RS21375	0.62	-1.5
4,625,240	-		DZA65_RS21375	0.62	-1.1
4,625,240	-		DZA65_RS21375	0.62	-2.3
4,625,240	-		DZA65_RS21375	0.62	-0.8
4,625,240	-		DZA65_RS21375	0.62	-2.0
4,625,240	-		DZA65_RS21375	0.62	-2.5
4,625,240	-		DZA65_RS21375	0.62	-4.4
4,625,240	-		DZA65_RS21375	0.62	-3.0
4,625,240	-		DZA65_RS21375	0.62	-3.5
4,625,259	+		DZA65_RS21375	0.64	-0.8
4,625,259	+		DZA65_RS21375	0.64	-1.7
4,625,259	+		DZA65_RS21375	0.64	-0.8
4,625,259	+		DZA65_RS21375	0.64	-2.7
4,625,259	+		DZA65_RS21375	0.64	-1.3
4,625,259	+		DZA65_RS21375	0.64	-1.7
4,625,259	+		DZA65_RS21375	0.64	-2.6
4,625,260	-		DZA65_RS21375	0.64	-0.5
4,625,260	-		DZA65_RS21375	0.64	+0.5
4,625,260	-		DZA65_RS21375	0.64	-2.0
4,625,260	-		DZA65_RS21375	0.64	-1.4
4,625,260	-		DZA65_RS21375	0.64	-1.1
4,625,260	-		DZA65_RS21375	0.64	-1.0
4,625,260	-		DZA65_RS21375	0.64	-3.0
4,625,261	+		DZA65_RS21375	0.65	-2.1
4,625,262	-		DZA65_RS21375	0.65	-2.3
4,625,295	+		DZA65_RS21375	0.69	-1.8
4,625,295	+		DZA65_RS21375	0.69	-0.5
4,625,295	+		DZA65_RS21375	0.69	-2.8
4,625,296	-		DZA65_RS21375	0.69	-2.3
4,625,296	-		DZA65_RS21375	0.69	-3.4
4,625,296	-		DZA65_RS21375	0.69	-4.4
4,625,296	-		DZA65_RS21375	0.69	-1.3
4,625,399	-		DZA65_RS21375	0.81	-2.5
4,625,399	-		DZA65_RS21375	0.81	+0.1
4,625,422	-		DZA65_RS21375	0.84	-4.0
4,625,434	-		DZA65_RS21375	0.86	-2.1
4,625,472	+				-1.4
4,625,513	+				-2.5
4,625,513	+				-0.8
4,625,514	-				-1.1
4,625,522	-				-1.8
4,625,522	-				-1.7
4,625,522	-				-0.5
4,625,542	+				-1.1
4,625,542	+				+0.8
4,625,542	+				-1.6
4,625,542	+				-1.1
4,625,542	+				-0.1
4,625,542	+				+0.5
4,625,542	+				+1.5
4,625,542	+				-0.2
4,625,542	+				+0.0
4,625,542	+				-2.3
4,625,542	+				+0.2
4,625,542	+				-0.2
4,625,542	+				+0.6
4,625,543	-				-1.2
4,625,543	-				-3.1
4,625,543	-				-2.0
4,625,543	-				-0.9
4,625,543	-				-0.1
4,625,543	-				-1.9
4,625,543	-				-1.9
4,625,543	-				-1.4
4,625,550	+				-0.1
4,625,559	-				-1.8
4,625,570	+				+0.5
4,625,570	+				+0.7
4,625,570	+				+0.3
4,625,571	-				-0.8
4,625,571	-				-0.5
4,625,614	-				+1.3
4,625,634	+				+0.4
4,625,647	+				+1.4
4,625,647	+				+0.9
4,625,647	+				+2.2
4,625,647	+				-0.4
4,625,647	+				-0.4
4,625,647	+				+1.4
4,625,648	-				-1.8
4,625,648	-				-0.1
4,625,648	-				+0.2
4,625,648	-				+1.2
4,625,648	-				+0.3
4,625,648	-				-0.5
4,625,648	-				-0.5
4,625,649	+				+0.9
4,625,649	+				+0.0
4,625,649	+				-0.5
4,625,649	+				-2.3
4,625,649	+				-0.1
4,625,649	+				+0.0
4,625,649	+				+0.7
4,625,649	+				-0.0
4,625,649	+				+0.3
4,625,649	+				-1.1
4,625,650	-				+0.9
4,625,650	-				-0.3
4,625,650	-				-0.2
4,625,650	-				+0.3
4,625,650	-				-1.1
4,625,650	-				-0.1
4,625,650	-				+0.8
4,625,650	-				-0.2
4,625,650	-				+0.4
4,625,650	-				-0.7
4,625,650	-				-1.1
4,625,650	-				+0.7
4,625,650	-				+0.4
4,625,650	-				+1.7
4,625,650	-				+0.5
4,625,650	-				-0.5
4,625,655	+				+0.2
4,625,669	+				+0.5
4,625,679	-				-0.8
4,625,679	-				-0.1
4,625,679	-				+0.1
4,625,688	+				+0.2
4,625,689	-				+0.1
4,625,719	+				-0.2
4,625,720	-				+1.3
4,625,727	+				+0.2
4,625,728	-				-0.0
4,625,737	+				+0.7
4,625,737	+				-0.9
4,625,737	+				+0.4
4,625,738	-				+0.1
4,625,738	-				+1.2
4,625,782	+				+1.5
4,625,782	+				+0.8
4,625,782	+				+0.8
4,625,782	+				-1.0
4,625,782	+				+1.3
4,625,782	+				+0.4
4,625,782	+				+0.2
4,625,783	-				-1.6
4,625,783	-				-1.0
4,625,783	-				-2.4
4,625,783	-				-0.3
4,625,783	-				+0.2
4,625,783	-				-0.6
4,625,783	-				-0.7
4,625,827	+				-0.7
4,625,827	+				+0.2
4,625,828	-				-0.3
4,625,828	-				-0.4
4,625,834	+				-1.0
4,625,881	-				+1.0
4,625,881	-				-1.0