Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20600

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,443,286	-		DZA65_RS20595	0.74	-1.5
4,443,286	-		DZA65_RS20595	0.74	+0.3
4,443,350	+		DZA65_RS20595	0.80	+0.3
4,443,384	+		DZA65_RS20595	0.84	+0.6
4,443,407	+		DZA65_RS20595	0.86	-1.0
4,443,407	+		DZA65_RS20595	0.86	+1.3
4,443,408	-		DZA65_RS20595	0.86	+1.4
4,443,408	-		DZA65_RS20595	0.86	-0.1
4,443,472	+				-2.5
4,443,472	+				-0.9
4,443,472	+				-0.5
4,443,472	+				-0.3
4,443,507	+				-0.0
4,443,507	+				+0.1
4,443,507	+				-1.1
4,443,507	+				-1.0
4,443,508	-				+2.3
4,443,508	-				+0.9
4,443,508	-				+0.9
4,443,521	+				-1.5
4,443,522	-				-0.9
4,443,522	-				+0.1
4,443,522	-				-0.5
4,443,549	+				-1.4
4,443,549	+				+0.8
4,443,549	+				-1.7
4,443,550	-				-1.7
4,443,550	-				+0.2
4,443,550	-				+0.6
4,443,550	-				+1.5
4,443,550	-				-1.3
4,443,550	-				+1.0
4,443,550	-				+0.5
4,443,556	+				+1.5
4,443,556	+				-0.5
4,443,556	+				-0.9
4,443,557	-				+0.5
4,443,557	-				+0.0
4,443,557	-				+0.6
4,443,557	-				+1.0
4,443,598	+				-0.5
4,443,598	+				+0.0
4,443,598	+				-0.2
4,443,598	+				-0.5
4,443,598	+				-0.4
4,443,598	+				+0.2
4,443,598	+				-2.1
4,443,598	+				-1.1
4,443,598	+				+1.2
4,443,599	-				+2.3
4,443,599	-				+0.5
4,443,599	-				+1.7
4,443,599	-				-0.5
4,443,599	-				-1.0
4,443,599	-				-1.1
4,443,599	-				+0.2
4,443,614	+				+1.2
4,443,614	+				+0.1
4,443,614	+				+0.3
4,443,614	+				-0.6
4,443,615	-				+0.3
4,443,615	-				-0.1
4,443,615	-				+0.5
4,443,615	-				+0.4
4,443,630	+				-1.4
4,443,630	+				+1.0
4,443,630	+				-0.4
4,443,630	+				-0.5
4,443,631	-				-1.9
4,443,631	-				-0.2
4,443,631	-				+0.2
4,443,631	-				+0.2
4,443,647	-				-2.1
4,443,663	-				-1.3
4,443,663	-				-0.1
4,443,776	+				-0.2
4,443,777	-				-1.3
4,443,777	-				+0.1
4,443,890	+				-0.1
4,443,890	+				-0.6
4,443,890	+				+0.7
4,443,891	-				+1.3
4,443,891	-				-1.4
4,443,891	-				-0.0
4,443,891	-				+0.1
4,443,925	-				-1.3
4,443,927	-				-0.2
4,443,927	-				+1.0
4,443,970	+				-1.1
4,443,998	-				-0.1
4,443,998	-				-0.4
4,444,062	+				-0.3
4,444,063	-				-2.1
4,444,077	+				-2.7
4,444,077	+				+0.8
4,444,077	+				-1.0
4,444,077	+				+0.3
4,444,078	-				-0.6
4,444,078	-				+0.2
4,444,078	-				+0.7
4,444,078	-				+1.1
4,444,127	+		DZA65_RS20600	0.10	-1.5
4,444,127	+		DZA65_RS20600	0.10	-2.0
4,444,127	+		DZA65_RS20600	0.10	+0.7
4,444,128	-		DZA65_RS20600	0.11	-1.5
4,444,140	+		DZA65_RS20600	0.11	-1.1
4,444,140	+		DZA65_RS20600	0.11	-1.5
4,444,140	+		DZA65_RS20600	0.11	-1.5
4,444,140	+		DZA65_RS20600	0.11	-0.6
4,444,140	+		DZA65_RS20600	0.11	-0.4
4,444,140	+		DZA65_RS20600	0.11	+1.3
4,444,140	+		DZA65_RS20600	0.11	-0.2
4,444,140	+		DZA65_RS20600	0.11	-1.9
4,444,140	+		DZA65_RS20600	0.11	+1.3
4,444,140	+		DZA65_RS20600	0.11	+0.5
4,444,140	+		DZA65_RS20600	0.11	+1.2
4,444,140	+		DZA65_RS20600	0.11	+0.3
4,444,140	+		DZA65_RS20600	0.11	+0.6
4,444,140	+		DZA65_RS20600	0.11	-2.5
4,444,140	+		DZA65_RS20600	0.11	+0.7
4,444,140	+		DZA65_RS20600	0.11	-1.0
4,444,140	+		DZA65_RS20600	0.11	+0.9
4,444,140	+		DZA65_RS20600	0.11	-1.9
4,444,140	+		DZA65_RS20600	0.11	+0.7
4,444,140	+				+0.5
4,444,140	+		DZA65_RS20600	0.11	+1.2
4,444,140	+		DZA65_RS20600	0.11	-0.0
4,444,140	+		DZA65_RS20600	0.11	-0.5
4,444,140	+		DZA65_RS20600	0.11	-0.6
4,444,140	+		DZA65_RS20600	0.11	-0.5
4,444,140	+		DZA65_RS20600	0.11	-0.6
4,444,140	+		DZA65_RS20600	0.11	-1.5
4,444,140	+		DZA65_RS20600	0.11	+0.7
4,444,140	+		DZA65_RS20600	0.11	-0.8
4,444,140	+		DZA65_RS20600	0.11	-0.9
4,444,140	+		DZA65_RS20600	0.11	+2.2
4,444,140	+		DZA65_RS20600	0.11	-0.3
4,444,140	+		DZA65_RS20600	0.11	-0.8
4,444,140	+		DZA65_RS20600	0.11	-0.5
4,444,140	+		DZA65_RS20600	0.11	+0.9
4,444,140	+		DZA65_RS20600	0.11	+0.2
4,444,141	-		DZA65_RS20600	0.11	-0.7
4,444,141	-		DZA65_RS20600	0.11	+0.1
4,444,141	-		DZA65_RS20600	0.11	-0.7
4,444,141	-		DZA65_RS20600	0.11	-0.4
4,444,141	-		DZA65_RS20600	0.11	-0.4
4,444,141	-		DZA65_RS20600	0.11	-0.4
4,444,141	-		DZA65_RS20600	0.11	+0.1
4,444,141	-		DZA65_RS20600	0.11	+0.2
4,444,141	-		DZA65_RS20600	0.11	+3.0
4,444,141	-		DZA65_RS20600	0.11	-0.5
4,444,141	-		DZA65_RS20600	0.11	-0.9
4,444,141	-		DZA65_RS20600	0.11	+0.5
4,444,141	-		DZA65_RS20600	0.11	-0.0
4,444,141	-		DZA65_RS20600	0.11	+0.0
4,444,141	-		DZA65_RS20600	0.11	-0.5
4,444,141	-		DZA65_RS20600	0.11	-0.9
4,444,141	-		DZA65_RS20600	0.11	-0.2
4,444,141	-		DZA65_RS20600	0.11	-0.5
4,444,141	-		DZA65_RS20600	0.11	+0.7
4,444,141	-		DZA65_RS20600	0.11	-0.6
4,444,141	-		DZA65_RS20600	0.11	+1.0
4,444,141	-		DZA65_RS20600	0.11	-0.7
4,444,141	-		DZA65_RS20600	0.11	+0.0
4,444,141	-		DZA65_RS20600	0.11	-1.1
4,444,141	-		DZA65_RS20600	0.11	+0.2
4,444,141	-		DZA65_RS20600	0.11	+0.4
4,444,141	-		DZA65_RS20600	0.11	-1.0
4,444,141	-		DZA65_RS20600	0.11	+0.0
4,444,141	-		DZA65_RS20600	0.11	+0.6
4,444,141	-		DZA65_RS20600	0.11	-0.5
4,444,141	-		DZA65_RS20600	0.11	-0.9
4,444,141	-		DZA65_RS20600	0.11	+0.5
4,444,141	-		DZA65_RS20600	0.11	-0.4
4,444,141	-		DZA65_RS20600	0.11	-1.6
4,444,141	-		DZA65_RS20600	0.11	+1.5
4,444,141	-		DZA65_RS20600	0.11	-1.1
4,444,141	-		DZA65_RS20600	0.11	-0.1
4,444,141	-		DZA65_RS20600	0.11	-1.2
4,444,141	-		DZA65_RS20600	0.11	+0.6
4,444,142	+		DZA65_RS20600	0.12	-2.3
4,444,142	+		DZA65_RS20600	0.12	-0.2
4,444,142	+		DZA65_RS20600	0.12	+1.0
4,444,142	+		DZA65_RS20600	0.12	-1.3
4,444,143	-		DZA65_RS20600	0.12	+0.2
4,444,143	-		DZA65_RS20600	0.12	-2.4
4,444,143	-		DZA65_RS20600	0.12	-0.5
4,444,143	-		DZA65_RS20600	0.12	-1.0
4,444,143	-		DZA65_RS20600	0.12	-2.5
4,444,143	-		DZA65_RS20600	0.12	+0.2
4,444,314	+				-0.1
4,444,314	+		DZA65_RS20600	0.24	-0.5
4,444,314	+		DZA65_RS20600	0.24	-0.0
4,444,315	-		DZA65_RS20600	0.24	-2.1
4,444,368	+		DZA65_RS20600	0.28	+0.2
4,444,368	+		DZA65_RS20600	0.28	-0.1
4,444,369	-		DZA65_RS20600	0.28	+0.5
4,444,369	-		DZA65_RS20600	0.28	-0.4
4,444,369	-		DZA65_RS20600	0.28	+0.5
4,444,392	-		DZA65_RS20600	0.30	-0.3
4,444,392	-		DZA65_RS20600	0.30	+0.3
4,444,438	+		DZA65_RS20600	0.33	-0.8
4,444,439	-		DZA65_RS20600	0.33	+1.5
4,444,439	-		DZA65_RS20600	0.33	-0.2
4,444,456	+		DZA65_RS20600	0.35	-0.3
4,444,457	-		DZA65_RS20600	0.35	-1.5
4,444,457	-		DZA65_RS20600	0.35	-1.5
4,444,457	-		DZA65_RS20600	0.35	+0.7
4,444,551	-		DZA65_RS20600	0.41	-1.1
4,444,665	+		DZA65_RS20600	0.50	+1.0
4,444,665	+		DZA65_RS20600	0.50	-0.4
4,444,665	+		DZA65_RS20600	0.50	-0.3
4,444,665	+		DZA65_RS20600	0.50	+0.9
4,444,665	+		DZA65_RS20600	0.50	-0.5
4,444,665	+		DZA65_RS20600	0.50	+0.6
4,444,666	-		DZA65_RS20600	0.50	-0.1
4,444,666	-		DZA65_RS20600	0.50	-0.4
4,444,666	-		DZA65_RS20600	0.50	-0.5
4,444,666	-		DZA65_RS20600	0.50	-2.0
4,444,666	-		DZA65_RS20600	0.50	-0.9
4,444,666	-		DZA65_RS20600	0.50	+0.2
4,444,666	-		DZA65_RS20600	0.50	+0.3
4,444,666	-		DZA65_RS20600	0.50	-0.9
4,444,667	+		DZA65_RS20600	0.50	-1.0
4,444,667	+		DZA65_RS20600	0.50	+0.6
4,444,668	-		DZA65_RS20600	0.50	+0.1
4,444,668	-				-1.5
4,444,668	-		DZA65_RS20600	0.50	-1.9
4,444,716	-		DZA65_RS20600	0.54	+0.7
4,444,716	-		DZA65_RS20600	0.54	-0.3
4,444,716	-		DZA65_RS20600	0.54	+0.5
4,444,868	+		DZA65_RS20600	0.65	-1.9
4,444,868	+		DZA65_RS20600	0.65	-0.9
4,444,869	-		DZA65_RS20600	0.65	+0.5
4,445,000	+		DZA65_RS20600	0.74	-1.1
4,445,000	+		DZA65_RS20600	0.74	+1.5
4,445,001	-		DZA65_RS20600	0.74	+0.5
4,445,001	-		DZA65_RS20600	0.74	-1.1
4,445,001	-		DZA65_RS20600	0.74	+0.1
4,445,001	-		DZA65_RS20600	0.74	-1.3
4,445,060	+		DZA65_RS20600	0.79	+1.1
4,445,060	+		DZA65_RS20600	0.79	+0.5
4,445,060	+		DZA65_RS20600	0.79	-0.7
4,445,061	-		DZA65_RS20600	0.79	-0.3
4,445,061	-		DZA65_RS20600	0.79	-0.5
4,445,061	-		DZA65_RS20600	0.79	-0.5
4,445,061	-		DZA65_RS20600	0.79	-0.5
4,445,061	-		DZA65_RS20600	0.79	-0.1
4,445,088	+		DZA65_RS20600	0.81	+1.5
4,445,088	+		DZA65_RS20600	0.81	-0.5
4,445,088	+		DZA65_RS20600	0.81	+0.1
4,445,088	+		DZA65_RS20600	0.81	+0.8
4,445,088	+		DZA65_RS20600	0.81	-1.1
4,445,088	+		DZA65_RS20600	0.81	-0.5
4,445,088	+		DZA65_RS20600	0.81	-1.1
4,445,088	+		DZA65_RS20600	0.81	-0.1
4,445,088	+		DZA65_RS20600	0.81	-0.3
4,445,088	+		DZA65_RS20600	0.81	-1.9
4,445,088	+		DZA65_RS20600	0.81	+0.7
4,445,088	+		DZA65_RS20600	0.81	-0.2
4,445,089	-		DZA65_RS20600	0.81	+0.3
4,445,089	-		DZA65_RS20600	0.81	+0.5
4,445,089	-		DZA65_RS20600	0.81	-2.3
4,445,089	-		DZA65_RS20600	0.81	+0.6
4,445,089	-		DZA65_RS20600	0.81	-1.1
4,445,089	-		DZA65_RS20600	0.81	-1.3
4,445,089	-		DZA65_RS20600	0.81	+1.0
4,445,089	-		DZA65_RS20600	0.81	+0.7
4,445,089	-		DZA65_RS20600	0.81	-0.3
4,445,089	-		DZA65_RS20600	0.81	-0.1
4,445,089	-		DZA65_RS20600	0.81	+0.3
4,445,089	-		DZA65_RS20600	0.81	+0.3
4,445,089	-		DZA65_RS20600	0.81	+0.1
4,445,089	-		DZA65_RS20600	0.81	-0.0
4,445,089	-		DZA65_RS20600	0.81	-1.5
4,445,089	-		DZA65_RS20600	0.81	+0.2
4,445,089	-		DZA65_RS20600	0.81	-1.3
4,445,099	+		DZA65_RS20600	0.82	-0.3
4,445,099	+		DZA65_RS20600	0.82	-0.3
4,445,099	+		DZA65_RS20600	0.82	+0.9
4,445,099	+		DZA65_RS20600	0.82	-0.3
4,445,099	+		DZA65_RS20600	0.82	+0.2
4,445,099	+		DZA65_RS20600	0.82	-0.2
4,445,099	+		DZA65_RS20600	0.82	-1.5
4,445,100	-		DZA65_RS20600	0.82	-1.9
4,445,100	-		DZA65_RS20600	0.82	-0.2
4,445,100	-		DZA65_RS20600	0.82	+0.1
4,445,100	-		DZA65_RS20600	0.82	+0.5
4,445,100	-		DZA65_RS20600	0.82	+0.6
4,445,100	-		DZA65_RS20600	0.82	+0.5
4,445,127	-		DZA65_RS20600	0.84	+0.0
4,445,219	+				+0.8
4,445,219	+				-1.0
4,445,220	-				+0.2
4,445,283	+				+1.5
4,445,283	+				+0.2
4,445,283	+				+1.1
4,445,283	+				-0.2
4,445,283	+				+0.5
4,445,283	+				+1.7
4,445,283	+				-0.2
4,445,283	+				-0.8
4,445,283	+				+0.5
4,445,284	-				-1.2
4,445,284	-				+0.2
4,445,284	-				-0.8
4,445,284	-				-0.3
4,445,284	-				+0.9
4,445,284	-				+0.5
4,445,438	+				-0.2
4,445,438	+				+0.3
4,445,438	+				-1.1
4,445,438	+				+0.1
4,445,438	+				-0.2
4,445,438	+				-0.3
4,445,438	+				-0.4
4,445,439	-				-0.5
4,445,439	-				+0.1
4,445,467	-				+1.1
4,445,506	+				-0.1
4,445,507	-				+0.8
4,445,578	-				-0.3
4,445,578	-				-1.2
4,445,596	-				-1.5
4,445,680	+		DZA65_RS20605	0.22	+0.2
4,445,680	+		DZA65_RS20605	0.22	-1.5
4,445,680	+		DZA65_RS20605	0.22	-0.1
4,445,680	+		DZA65_RS20605	0.22	+0.1
4,445,681	-		DZA65_RS20605	0.22	+0.5
4,445,681	-		DZA65_RS20605	0.22	-1.8
4,445,681	-		DZA65_RS20605	0.22	-0.0
4,445,681	-		DZA65_RS20605	0.22	+0.2
4,445,681	-		DZA65_RS20605	0.22	-0.6
4,445,681	-		DZA65_RS20605	0.22	+0.1
4,445,681	-		DZA65_RS20605	0.22	+0.9
4,445,681	-		DZA65_RS20605	0.22	-0.2
4,445,681	-		DZA65_RS20605	0.22	+0.5
4,445,681	-		DZA65_RS20605	0.22	-0.3
4,445,681	-		DZA65_RS20605	0.22	-0.4
4,445,785	+		DZA65_RS20605	0.40	-1.0
4,445,785	+		DZA65_RS20605	0.40	+0.1
4,445,785	+		DZA65_RS20605	0.40	-0.5
4,445,785	+		DZA65_RS20605	0.40	-0.2
4,445,786	-		DZA65_RS20605	0.40	+0.5
4,445,786	-		DZA65_RS20605	0.40	+0.6
4,445,786	-		DZA65_RS20605	0.40	+0.6
4,445,786	-		DZA65_RS20605	0.40	+0.5
4,445,866	+		DZA65_RS20605	0.54	-0.3
4,445,866	+		DZA65_RS20605	0.54	-0.5
4,445,866	+		DZA65_RS20605	0.54	-0.8
4,445,866	+		DZA65_RS20605	0.54	-1.1
4,445,867	-		DZA65_RS20605	0.54	-0.5
4,445,867	-		DZA65_RS20605	0.54	-0.5
4,445,867	-		DZA65_RS20605	0.54	-0.5
4,445,875	+		DZA65_RS20605	0.55	-2.1
4,445,876	-		DZA65_RS20605	0.56	-1.9
4,445,887	+		DZA65_RS20605	0.57	-1.1
4,445,887	+		DZA65_RS20605	0.57	-0.7
4,445,887	+		DZA65_RS20605	0.57	+1.0
4,445,887	+		DZA65_RS20605	0.57	-2.5
4,445,887	+		DZA65_RS20605	0.57	+1.8
4,445,887	+		DZA65_RS20605	0.57	-2.1
4,445,887	+		DZA65_RS20605	0.57	-1.5
4,445,887	+		DZA65_RS20605	0.57	-1.7
4,445,888	-		DZA65_RS20605	0.58	-1.3
4,445,888	-		DZA65_RS20605	0.58	-2.5
4,445,888	-		DZA65_RS20605	0.58	-0.5
4,445,888	-		DZA65_RS20605	0.58	+0.0
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4,445,888	-		DZA65_RS20605	0.58	-2.3
4,445,888	-		DZA65_RS20605	0.58	-0.1
4,445,888	-		DZA65_RS20605	0.58	-1.9
4,445,888	-		DZA65_RS20605	0.58	+0.0
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4,445,924	+		DZA65_RS20605	0.64	+0.8
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4,445,924	+		DZA65_RS20605	0.64	-0.0
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4,445,933	+		DZA65_RS20605	0.65	+0.5
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4,446,073	+		DZA65_RS20605	0.89	+0.7
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4,446,073	+		DZA65_RS20605	0.89	-0.6
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4,446,087	+				+0.2
4,446,088	-				-0.7
4,446,088	-				-1.7
4,446,088	-				-1.9
4,446,091	+				+1.1
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4,446,091	+				-2.3
4,446,091	+				+0.7
4,446,091	+				-1.5
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4,446,091	+				-0.3
4,446,091	+				+0.6
4,446,091	+				+1.0
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4,446,091	+				-0.8
4,446,091	+				+0.0
4,446,091	+				-1.9
4,446,091	+				-0.3
4,446,091	+				-1.5
4,446,091	+				+1.1
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4,446,092	-				-1.3
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4,446,139	-				-2.5
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4,446,145	+				+0.1
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4,446,197	-				+1.0
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4,446,197	-				+0.0
4,446,238	+				-0.3
4,446,256	-				+0.5