Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20335

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,407,246	+				-0.4
4,407,246	+				-1.5
4,407,246	+				-0.8
4,407,247	-				+0.0
4,407,247	-				-0.5
4,407,266	-		DZA65_RS20325	0.13	-0.2
4,407,266	-		DZA65_RS20325	0.13	+0.5
4,407,290	-		DZA65_RS20325	0.17	-0.1
4,407,312	-		DZA65_RS20325	0.21	-0.8
4,407,336	+		DZA65_RS20325	0.25	-1.1
4,407,337	-		DZA65_RS20325	0.25	+0.7
4,407,343	+		DZA65_RS20325	0.26	-0.0
4,407,344	-		DZA65_RS20325	0.27	+1.3
4,407,405	+		DZA65_RS20325	0.37	+0.6
4,407,406	-		DZA65_RS20325	0.38	+1.2
4,407,406	-		DZA65_RS20325	0.38	+0.3
4,407,445	+		DZA65_RS20325	0.45	-0.5
4,407,446	-		DZA65_RS20325	0.45	-0.4
4,407,480	+		DZA65_RS20325	0.51	-2.4
4,407,481	-		DZA65_RS20325	0.51	+0.5
4,407,498	-		DZA65_RS20325	0.54	+1.6
4,407,498	-		DZA65_RS20325	0.54	+1.5
4,407,501	+		DZA65_RS20325	0.55	-1.1
4,407,501	+		DZA65_RS20325	0.55	-0.2
4,407,501	+		DZA65_RS20325	0.55	-0.8
4,407,501	+		DZA65_RS20325	0.55	+1.5
4,407,502	-		DZA65_RS20325	0.55	-2.0
4,407,502	-		DZA65_RS20325	0.55	+0.5
4,407,502	-		DZA65_RS20325	0.55	-0.4
4,407,525	-		DZA65_RS20325	0.59	+0.6
4,407,608	+		DZA65_RS20325	0.74	-2.7
4,407,609	-		DZA65_RS20325	0.74	+0.2
4,407,609	-		DZA65_RS20325	0.74	-0.9
4,407,609	-		DZA65_RS20325	0.74	-0.1
4,407,609	-		DZA65_RS20325	0.74	+0.0
4,407,609	-		DZA65_RS20325	0.74	-0.4
4,407,616	-		DZA65_RS20325	0.75	-1.9
4,407,627	+		DZA65_RS20325	0.77	-1.5
4,407,627	+		DZA65_RS20325	0.77	-1.0
4,407,628	-		DZA65_RS20325	0.77	+0.1
4,407,628	-		DZA65_RS20325	0.77	+0.2
4,407,628	-		DZA65_RS20325	0.77	-0.2
4,407,629	+		DZA65_RS20325	0.78	-1.5
4,407,630	-		DZA65_RS20325	0.78	+0.0
4,407,630	-		DZA65_RS20325	0.78	-1.5
4,407,630	-		DZA65_RS20325	0.78	+2.3
4,407,630	-		DZA65_RS20325	0.78	+0.1
4,407,630	-		DZA65_RS20325	0.78	-1.0
4,407,630	-		DZA65_RS20325	0.78	+0.1
4,407,735	+				-1.1
4,407,735	+				-0.6
4,407,735	+				-1.9
4,407,735	+				-1.9
4,407,735	+				+0.0
4,407,736	-				-0.5
4,407,736	-				+0.0
4,407,736	-				-0.2
4,407,736	-				+0.5
4,407,736	-				-0.1
4,407,736	-				-0.4
4,407,736	-				+0.5
4,407,736	-				-0.2
4,407,736	-				+0.2
4,407,739	+				-0.7
4,407,739	+				-0.3
4,407,739	+				-1.5
4,407,740	-				-0.9
4,407,740	-				+0.7
4,407,740	-				-1.3
4,407,740	-				-0.5
4,407,740	-				-1.1
4,407,758	+				-0.4
4,407,759	-				+0.5
4,407,759	-				+0.2
4,407,784	-				+0.3
4,407,784	-				-0.0
4,407,806	+				+0.8
4,407,806	+				-0.5
4,407,806	+				+0.2
4,407,807	-				+0.3
4,407,807	-				-1.9
4,407,807	-				+0.6
4,407,807	-				+0.3
4,407,807	-				+0.5
4,407,807	-				+1.4
4,407,879	-		DZA65_RS20330	0.22	+0.0
4,407,879	-		DZA65_RS20330	0.22	-0.5
4,407,879	-		DZA65_RS20330	0.22	+0.6
4,407,928	+				+0.5
4,407,929	-		DZA65_RS20330	0.33	+0.8
4,407,961	+		DZA65_RS20330	0.40	-1.1
4,407,962	-		DZA65_RS20330	0.40	-0.8
4,407,962	-		DZA65_RS20330	0.40	+1.7
4,407,962	-		DZA65_RS20330	0.40	-1.4
4,408,027	+		DZA65_RS20330	0.54	-2.7
4,408,027	+		DZA65_RS20330	0.54	-1.7
4,408,029	+		DZA65_RS20330	0.54	-2.9
4,408,030	-		DZA65_RS20330	0.54	-0.7
4,408,030	-		DZA65_RS20330	0.54	-0.1
4,408,030	-		DZA65_RS20330	0.54	+1.0
4,408,030	-		DZA65_RS20330	0.54	+1.7
4,408,030	-		DZA65_RS20330	0.54	+1.6
4,408,125	+		DZA65_RS20330	0.74	-0.3
4,408,125	+		DZA65_RS20330	0.74	+0.1
4,408,125	+		DZA65_RS20330	0.74	-1.5
4,408,125	+		DZA65_RS20330	0.74	+0.6
4,408,126	-		DZA65_RS20330	0.74	+0.2
4,408,126	-		DZA65_RS20330	0.74	+0.1
4,408,126	-		DZA65_RS20330	0.74	+0.5
4,408,126	-		DZA65_RS20330	0.74	-2.5
4,408,126	-		DZA65_RS20330	0.74	+0.9
4,408,126	-				+1.2
4,408,126	-		DZA65_RS20330	0.74	-0.0
4,408,126	-		DZA65_RS20330	0.74	+1.0
4,408,126	-		DZA65_RS20330	0.74	+1.1
4,408,130	-		DZA65_RS20330	0.75	+0.3
4,408,130	-		DZA65_RS20330	0.75	+0.6
4,408,130	-		DZA65_RS20330	0.75	-2.1
4,408,174	+		DZA65_RS20330	0.85	-0.8
4,408,174	+		DZA65_RS20330	0.85	-1.7
4,408,174	+		DZA65_RS20330	0.85	-0.3
4,408,174	+		DZA65_RS20330	0.85	+1.2
4,408,174	+		DZA65_RS20330	0.85	-0.7
4,408,175	-		DZA65_RS20330	0.85	-0.0
4,408,175	-		DZA65_RS20330	0.85	+1.6
4,408,175	-		DZA65_RS20330	0.85	+0.6
4,408,175	-		DZA65_RS20330	0.85	-0.5
4,408,175	-		DZA65_RS20330	0.85	-0.0
4,408,175	-		DZA65_RS20330	0.85	-1.2
4,408,175	-		DZA65_RS20330	0.85	+0.0
4,408,175	-		DZA65_RS20330	0.85	-0.1
4,408,175	-		DZA65_RS20330	0.85	-0.0
4,408,175	-		DZA65_RS20330	0.85	+1.5
4,408,175	-		DZA65_RS20330	0.85	+0.4
4,408,212	+				-1.9
4,408,212	+				+0.9
4,408,212	+				-2.2
4,408,212	+				-1.8
4,408,212	+				-1.1
4,408,212	+				-0.6
4,408,212	+				+0.6
4,408,213	-				+0.5
4,408,213	-				-0.2
4,408,213	-				-1.5
4,408,213	-				+0.5
4,408,213	-				-2.1
4,408,213	-				-0.1
4,408,213	-				+1.2
4,408,213	-				+2.3
4,408,227	+				+0.5
4,408,227	+				-0.8
4,408,227	+				-1.9
4,408,227	+				+0.2
4,408,227	+				-0.7
4,408,227	+				+0.5
4,408,227	+				-1.1
4,408,227	+				-1.0
4,408,228	-				+1.9
4,408,228	-				+0.8
4,408,228	-				+1.5
4,408,228	-				+0.3
4,408,228	-				-1.3
4,408,228	-				+2.0
4,408,228	-				+0.5
4,408,228	-				+1.4
4,408,228	-				+0.6
4,408,235	+				-0.1
4,408,235	+				+0.5
4,408,235	+				+0.7
4,408,235	+				-0.7
4,408,235	+				+2.8
4,408,235	+				-0.7
4,408,236	-				+0.6
4,408,236	-				+0.5
4,408,236	-				+0.9
4,408,236	-				+0.7
4,408,236	-				+0.1
4,408,236	-				+0.5
4,408,236	-				-0.9
4,408,236	-				-2.1
4,408,236	-				-0.7
4,408,260	+				-0.4
4,408,261	-				-0.2
4,408,261	-				+2.2
4,408,262	+				+0.3
4,408,262	+				+2.5
4,408,262	+				+0.9
4,408,262	+				+0.5
4,408,262	+				-1.7
4,408,263	-				+0.7
4,408,263	-				+1.1
4,408,263	-				-0.3
4,408,263	-				-1.9
4,408,270	+				-2.4
4,408,270	+				-2.7
4,408,271	-				-0.2
4,408,282	-				+1.1
4,408,302	+				+0.0
4,408,302	+				+0.2
4,408,302	+				-0.6
4,408,302	+				-0.3
4,408,302	+				+0.0
4,408,303	-				-2.1
4,408,303	-				+1.6
4,408,303	-				-0.8
4,408,303	-				+0.7
4,408,318	-				+1.7
4,408,322	+				-1.0
4,408,322	+				-0.5
4,408,322	+				-0.7
4,408,322	+				-2.2
4,408,322	+				-0.4
4,408,323	-				+1.6
4,408,323	-				+1.0
4,408,323	-				+0.9
4,408,323	-				+0.1
4,408,379	+		DZA65_RS20335	0.14	-1.1
4,408,379	+		DZA65_RS20335	0.14	-1.4
4,408,379	+		DZA65_RS20335	0.14	-0.2
4,408,380	-		DZA65_RS20335	0.14	-1.5
4,408,380	-		DZA65_RS20335	0.14	-0.3
4,408,392	+		DZA65_RS20335	0.15	-1.4
4,408,392	+		DZA65_RS20335	0.15	-2.9
4,408,393	-		DZA65_RS20335	0.15	-1.5
4,408,393	-		DZA65_RS20335	0.15	+0.5
4,408,393	-		DZA65_RS20335	0.15	+0.3
4,408,393	-		DZA65_RS20335	0.15	+0.3
4,408,448	+		DZA65_RS20335	0.20	-0.8
4,408,554	+		DZA65_RS20335	0.30	+0.8
4,408,554	+		DZA65_RS20335	0.30	-0.3
4,408,555	-		DZA65_RS20335	0.30	+1.8
4,408,555	-		DZA65_RS20335	0.30	+0.0
4,408,568	+		DZA65_RS20335	0.31	+0.0
4,408,611	+		DZA65_RS20335	0.35	+0.7
4,408,611	+		DZA65_RS20335	0.35	-0.8
4,408,611	+		DZA65_RS20335	0.35	+0.5
4,408,612	-		DZA65_RS20335	0.35	-1.4
4,408,612	-		DZA65_RS20335	0.35	+0.1
4,408,637	-		DZA65_RS20335	0.37	-0.9
4,408,698	+		DZA65_RS20335	0.42	-0.3
4,408,698	+		DZA65_RS20335	0.42	+0.3
4,408,698	+		DZA65_RS20335	0.42	-1.1
4,408,699	-		DZA65_RS20335	0.42	-1.1
4,408,699	-		DZA65_RS20335	0.42	-1.1
4,408,712	+		DZA65_RS20335	0.44	-0.5
4,408,712	+		DZA65_RS20335	0.44	-1.0
4,408,713	-		DZA65_RS20335	0.44	-0.5
4,408,713	-		DZA65_RS20335	0.44	+2.0
4,408,713	-		DZA65_RS20335	0.44	+0.2
4,408,839	+		DZA65_RS20335	0.55	+0.9
4,408,840	-		DZA65_RS20335	0.55	-0.2
4,408,991	-		DZA65_RS20335	0.68	+0.2
4,409,037	+		DZA65_RS20335	0.72	+1.2
4,409,037	+		DZA65_RS20335	0.72	-0.5
4,409,038	-		DZA65_RS20335	0.72	-2.1
4,409,038	-		DZA65_RS20335	0.72	-0.5
4,409,038	-		DZA65_RS20335	0.72	-0.0
4,409,038	-		DZA65_RS20335	0.72	-1.0
4,409,038	-		DZA65_RS20335	0.72	-0.4
4,409,038	-		DZA65_RS20335	0.72	-0.2
4,409,038	-		DZA65_RS20335	0.72	-0.5
4,409,038	-		DZA65_RS20335	0.72	-1.1
4,409,038	-		DZA65_RS20335	0.72	-0.8
4,409,038	-		DZA65_RS20335	0.72	-0.6
4,409,038	-		DZA65_RS20335	0.72	+0.3
4,409,038	-		DZA65_RS20335	0.72	-0.3
4,409,038	-		DZA65_RS20335	0.72	-0.5
4,409,038	-		DZA65_RS20335	0.72	-0.4
4,409,040	+		DZA65_RS20335	0.72	+0.3
4,409,040	+		DZA65_RS20335	0.72	+1.3
4,409,040	+		DZA65_RS20335	0.72	-1.0
4,409,062	+		DZA65_RS20335	0.74	-2.1
4,409,062	+		DZA65_RS20335	0.74	+0.3
4,409,062	+		DZA65_RS20335	0.74	-0.5
4,409,062	+		DZA65_RS20335	0.74	+0.8
4,409,062	+		DZA65_RS20335	0.74	-0.5
4,409,062	+		DZA65_RS20335	0.74	-0.9
4,409,062	+		DZA65_RS20335	0.74	+1.3
4,409,062	+		DZA65_RS20335	0.74	-0.5
4,409,062	+		DZA65_RS20335	0.74	+0.2
4,409,063	-		DZA65_RS20335	0.75	-0.6
4,409,063	-		DZA65_RS20335	0.75	+0.5
4,409,063	-		DZA65_RS20335	0.75	+1.5
4,409,063	-		DZA65_RS20335	0.75	-1.6
4,409,063	-		DZA65_RS20335	0.75	+0.7
4,409,071	-		DZA65_RS20335	0.75	-0.3
4,409,090	+		DZA65_RS20335	0.77	+1.5
4,409,091	-		DZA65_RS20335	0.77	+0.6
4,409,091	-		DZA65_RS20335	0.77	+0.5
4,409,091	-		DZA65_RS20335	0.77	+0.5
4,409,091	-		DZA65_RS20335	0.77	+0.2
4,409,091	-		DZA65_RS20335	0.77	-2.1
4,409,165	+		DZA65_RS20335	0.84	-0.1
4,409,165	+		DZA65_RS20335	0.84	-1.1
4,409,166	-		DZA65_RS20335	0.84	-0.5
4,409,166	-		DZA65_RS20335	0.84	+1.2
4,409,166	-		DZA65_RS20335	0.84	+0.8
4,409,352	-				-0.0
4,409,352	-				-1.0
4,409,387	+				-0.7
4,409,387	+				+0.3
4,409,414	-				-2.1
4,409,418	+				+0.5
4,409,447	+				+0.5
4,409,899	+		DZA65_RS20340	0.85	-2.4
4,409,971	+				-0.2
4,409,971	+				-1.0
4,409,971	+				+0.7