Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19650 and DZA65_RS19655 are separated by 104 nucleotides DZA65_RS19655 and DZA65_RS19660 are separated by 99 nucleotides DZA65_RS19660 and DZA65_RS19665 are separated by 60 nucleotides
DZA65_RS19650: DZA65_RS19650 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 4,254,368 to 4,255,750
_RS19650
DZA65_RS19655: DZA65_RS19655 - adenylosuccinate synthase, at 4,255,855 to 4,257,153
_RS19655
DZA65_RS19660: DZA65_RS19660 - DUF2065 domain-containing protein, at 4,257,253 to 4,257,453
_RS19660
DZA65_RS19665: DZA65_RS19665 - protease modulator HflC, at 4,257,514 to 4,258,509
_RS19665
Position (kb) 4255
4256
4257
4258 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4254.893 kb on + strand, within DZA65_RS19650 at 4254.893 kb on + strand, within DZA65_RS19650 at 4254.893 kb on + strand, within DZA65_RS19650 at 4254.893 kb on + strand, within DZA65_RS19650 at 4254.893 kb on + strand, within DZA65_RS19650 at 4254.894 kb on - strand, within DZA65_RS19650 at 4254.894 kb on - strand, within DZA65_RS19650 at 4254.909 kb on + strand, within DZA65_RS19650 at 4254.909 kb on + strand, within DZA65_RS19650 at 4254.909 kb on + strand, within DZA65_RS19650 at 4255.149 kb on + strand, within DZA65_RS19650 at 4255.149 kb on + strand, within DZA65_RS19650 at 4255.149 kb on + strand, within DZA65_RS19650 at 4255.150 kb on - strand, within DZA65_RS19650 at 4255.150 kb on - strand, within DZA65_RS19650 at 4255.150 kb on - strand, within DZA65_RS19650 at 4255.150 kb on - strand, within DZA65_RS19650 at 4255.150 kb on - strand, within DZA65_RS19650 at 4255.150 kb on - strand, within DZA65_RS19650 at 4255.151 kb on + strand, within DZA65_RS19650 at 4255.151 kb on + strand, within DZA65_RS19650 at 4255.151 kb on + strand, within DZA65_RS19650 at 4255.151 kb on + strand, within DZA65_RS19650 at 4255.152 kb on - strand, within DZA65_RS19650 at 4255.152 kb on - strand, within DZA65_RS19650 at 4255.152 kb on - strand, within DZA65_RS19650 at 4255.152 kb on - strand, within DZA65_RS19650 at 4255.152 kb on - strand, within DZA65_RS19650 at 4255.152 kb on - strand, within DZA65_RS19650 at 4255.152 kb on - strand, within DZA65_RS19650 at 4255.164 kb on + strand, within DZA65_RS19650 at 4255.164 kb on + strand, within DZA65_RS19650 at 4255.164 kb on + strand, within DZA65_RS19650 at 4255.164 kb on + strand, within DZA65_RS19650 at 4255.165 kb on - strand, within DZA65_RS19650 at 4255.165 kb on - strand, within DZA65_RS19650 at 4255.165 kb on - strand, within DZA65_RS19650 at 4255.165 kb on - strand, within DZA65_RS19650 at 4255.213 kb on + strand, within DZA65_RS19650 at 4255.346 kb on + strand, within DZA65_RS19650 at 4255.346 kb on + strand, within DZA65_RS19650 at 4255.488 kb on + strand, within DZA65_RS19650 at 4255.540 kb on + strand, within DZA65_RS19650 at 4255.540 kb on + strand, within DZA65_RS19650 at 4255.540 kb on + strand, within DZA65_RS19650 at 4255.540 kb on + strand, within DZA65_RS19650 at 4255.541 kb on - strand, within DZA65_RS19650 at 4255.541 kb on - strand, within DZA65_RS19650 at 4255.541 kb on - strand, within DZA65_RS19650 at 4255.541 kb on - strand, within DZA65_RS19650 at 4255.541 kb on - strand, within DZA65_RS19650 at 4255.618 kb on - strand at 4255.654 kb on + strand at 4255.655 kb on - strand at 4255.655 kb on - strand at 4255.655 kb on - strand at 4255.655 kb on - strand at 4255.655 kb on - strand at 4255.655 kb on - strand at 4255.655 kb on - strand at 4255.663 kb on - strand at 4255.687 kb on + strand at 4255.688 kb on - strand at 4255.688 kb on - strand at 4255.688 kb on - strand at 4255.702 kb on - strand at 4255.702 kb on - strand at 4255.770 kb on + strand at 4255.770 kb on + strand at 4255.770 kb on + strand at 4255.770 kb on + strand at 4255.770 kb on + strand at 4255.770 kb on + strand at 4255.770 kb on + strand at 4255.771 kb on - strand at 4255.771 kb on - strand at 4255.771 kb on - strand at 4255.771 kb on - strand at 4255.771 kb on - strand at 4255.771 kb on - strand at 4255.804 kb on + strand at 4255.856 kb on + strand at 4255.856 kb on + strand at 4255.856 kb on + strand at 4255.856 kb on + strand at 4255.857 kb on - strand at 4255.958 kb on + strand at 4255.989 kb on - strand, within DZA65_RS19655 at 4256.451 kb on + strand, within DZA65_RS19655 at 4256.651 kb on + strand, within DZA65_RS19655 at 4256.741 kb on + strand, within DZA65_RS19655 at 4256.990 kb on - strand, within DZA65_RS19655 at 4257.066 kb on - strand at 4257.091 kb on + strand at 4257.189 kb on - strand at 4257.189 kb on - strand at 4257.189 kb on - strand at 4257.213 kb on + strand at 4257.214 kb on - strand at 4257.220 kb on - strand at 4257.281 kb on + strand at 4257.281 kb on + strand, within DZA65_RS19660 at 4257.281 kb on + strand, within DZA65_RS19660 at 4257.281 kb on + strand, within DZA65_RS19660 at 4257.281 kb on + strand, within DZA65_RS19660 at 4257.281 kb on + strand, within DZA65_RS19660 at 4257.281 kb on + strand, within DZA65_RS19660 at 4257.281 kb on + strand, within DZA65_RS19660 at 4257.282 kb on - strand, within DZA65_RS19660 at 4257.282 kb on - strand, within DZA65_RS19660 at 4257.282 kb on - strand, within DZA65_RS19660 at 4257.282 kb on - strand, within DZA65_RS19660 at 4257.282 kb on - strand, within DZA65_RS19660 at 4257.282 kb on - strand, within DZA65_RS19660 at 4257.282 kb on - strand, within DZA65_RS19660 at 4257.282 kb on - strand, within DZA65_RS19660 at 4257.284 kb on + strand, within DZA65_RS19660 at 4257.284 kb on + strand, within DZA65_RS19660 at 4257.284 kb on + strand, within DZA65_RS19660 at 4257.284 kb on + strand, within DZA65_RS19660 at 4257.284 kb on + strand, within DZA65_RS19660 at 4257.284 kb on + strand, within DZA65_RS19660 at 4257.284 kb on + strand, within DZA65_RS19660 at 4257.284 kb on + strand, within DZA65_RS19660 at 4257.284 kb on + strand, within DZA65_RS19660 at 4257.284 kb on + strand, within DZA65_RS19660 at 4257.284 kb on + strand, within DZA65_RS19660 at 4257.285 kb on - strand, within DZA65_RS19660 at 4257.285 kb on - strand, within DZA65_RS19660 at 4257.285 kb on - strand, within DZA65_RS19660 at 4257.285 kb on - strand, within DZA65_RS19660 at 4257.310 kb on - strand, within DZA65_RS19660 at 4257.334 kb on - strand, within DZA65_RS19660 at 4257.354 kb on + strand, within DZA65_RS19660 at 4257.355 kb on - strand, within DZA65_RS19660 at 4257.378 kb on + strand, within DZA65_RS19660 at 4257.379 kb on - strand, within DZA65_RS19660 at 4257.379 kb on - strand, within DZA65_RS19660 at 4257.381 kb on + strand, within DZA65_RS19660 at 4257.392 kb on - strand, within DZA65_RS19660 at 4257.411 kb on + strand, within DZA65_RS19660 at 4257.412 kb on - strand, within DZA65_RS19660 at 4257.412 kb on - strand, within DZA65_RS19660 at 4257.412 kb on - strand, within DZA65_RS19660 at 4257.412 kb on - strand, within DZA65_RS19660 at 4257.412 kb on - strand, within DZA65_RS19660 at 4257.412 kb on - strand, within DZA65_RS19660 at 4257.415 kb on + strand, within DZA65_RS19660 at 4257.453 kb on + strand at 4257.454 kb on - strand at 4257.454 kb on - strand at 4257.505 kb on + strand at 4257.506 kb on - strand at 4257.515 kb on + strand at 4257.522 kb on + strand at 4257.522 kb on + strand at 4257.522 kb on + strand at 4257.552 kb on - strand at 4257.721 kb on - strand, within DZA65_RS19665 at 4257.721 kb on - strand, within DZA65_RS19665 at 4257.862 kb on - strand, within DZA65_RS19665 at 4257.913 kb on - strand, within DZA65_RS19665
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,254,893 + DZA65_RS19650 0.38 +0.1 4,254,893 + DZA65_RS19650 0.38 +1.3 4,254,893 + DZA65_RS19650 0.38 -0.8 4,254,893 + DZA65_RS19650 0.38 -2.2 4,254,893 + DZA65_RS19650 0.38 -1.2 4,254,894 - DZA65_RS19650 0.38 -0.7 4,254,894 - DZA65_RS19650 0.38 +2.4 4,254,909 + DZA65_RS19650 0.39 -0.2 4,254,909 + DZA65_RS19650 0.39 +0.2 4,254,909 + DZA65_RS19650 0.39 -1.6 4,255,149 + DZA65_RS19650 0.56 +0.5 4,255,149 + DZA65_RS19650 0.56 +0.4 4,255,149 + DZA65_RS19650 0.56 -0.0 4,255,150 - DZA65_RS19650 0.57 +0.4 4,255,150 - DZA65_RS19650 0.57 -0.6 4,255,150 - DZA65_RS19650 0.57 -1.0 4,255,150 - DZA65_RS19650 0.57 -0.7 4,255,150 - DZA65_RS19650 0.57 +0.2 4,255,150 - DZA65_RS19650 0.57 -1.9 4,255,151 + DZA65_RS19650 0.57 +0.7 4,255,151 + DZA65_RS19650 0.57 -2.2 4,255,151 + DZA65_RS19650 0.57 +0.6 4,255,151 + DZA65_RS19650 0.57 +0.6 4,255,152 - DZA65_RS19650 0.57 -0.2 4,255,152 - DZA65_RS19650 0.57 -0.9 4,255,152 - DZA65_RS19650 0.57 -0.7 4,255,152 - DZA65_RS19650 0.57 -0.2 4,255,152 - DZA65_RS19650 0.57 -0.1 4,255,152 - DZA65_RS19650 0.57 +1.3 4,255,152 - DZA65_RS19650 0.57 -1.8 4,255,164 + DZA65_RS19650 0.58 -0.1 4,255,164 + DZA65_RS19650 0.58 -0.4 4,255,164 + DZA65_RS19650 0.58 -0.2 4,255,164 + DZA65_RS19650 0.58 -0.9 4,255,165 - DZA65_RS19650 0.58 -0.3 4,255,165 - DZA65_RS19650 0.58 -1.2 4,255,165 - DZA65_RS19650 0.58 -0.7 4,255,165 - DZA65_RS19650 0.58 +0.3 4,255,213 + DZA65_RS19650 0.61 +0.3 4,255,346 + DZA65_RS19650 0.71 -0.2 4,255,346 + DZA65_RS19650 0.71 -0.2 4,255,488 + DZA65_RS19650 0.81 -0.0 4,255,540 + DZA65_RS19650 0.85 -2.2 4,255,540 + DZA65_RS19650 0.85 -0.2 4,255,540 + DZA65_RS19650 0.85 +2.7 4,255,540 + DZA65_RS19650 0.85 +1.1 4,255,541 - DZA65_RS19650 0.85 +1.0 4,255,541 - DZA65_RS19650 0.85 -1.0 4,255,541 - DZA65_RS19650 0.85 +0.6 4,255,541 - DZA65_RS19650 0.85 -0.1 4,255,541 - DZA65_RS19650 0.85 -0.9 4,255,618 - -2.4 4,255,654 + -1.4 4,255,655 - -2.4 4,255,655 - -0.7 4,255,655 - +0.4 4,255,655 - -1.0 4,255,655 - -1.6 4,255,655 - -1.2 4,255,655 - +0.2 4,255,663 - -1.4 4,255,687 + -0.1 4,255,688 - +0.3 4,255,688 - +0.4 4,255,688 - -1.1 4,255,702 - -0.0 4,255,702 - -1.0 4,255,770 + -2.2 4,255,770 + +0.8 4,255,770 + -2.2 4,255,770 + -0.6 4,255,770 + -0.6 4,255,770 + +0.6 4,255,770 + +0.3 4,255,771 - -0.0 4,255,771 - -1.3 4,255,771 - -2.2 4,255,771 - +0.3 4,255,771 - -1.2 4,255,771 - -0.6 4,255,804 + -0.2 4,255,856 + -1.1 4,255,856 + -1.2 4,255,856 + -1.0 4,255,856 + -3.0 4,255,857 - +0.9 4,255,958 + -1.6 4,255,989 - DZA65_RS19655 0.10 -1.5 4,256,451 + DZA65_RS19655 0.46 -4.2 4,256,651 + DZA65_RS19655 0.61 -0.6 4,256,741 + DZA65_RS19655 0.68 -0.9 4,256,990 - DZA65_RS19655 0.87 +0.1 4,257,066 - +0.1 4,257,091 + -0.9 4,257,189 - +0.4 4,257,189 - +0.6 4,257,189 - +0.1 4,257,213 + -0.6 4,257,214 - +1.2 4,257,220 - +1.0 4,257,281 + -1.2 4,257,281 + DZA65_RS19660 0.14 -0.9 4,257,281 + DZA65_RS19660 0.14 +0.7 4,257,281 + DZA65_RS19660 0.14 -0.1 4,257,281 + DZA65_RS19660 0.14 +0.6 4,257,281 + DZA65_RS19660 0.14 +0.8 4,257,281 + DZA65_RS19660 0.14 +0.4 4,257,281 + DZA65_RS19660 0.14 +0.4 4,257,282 - DZA65_RS19660 0.14 +2.0 4,257,282 - DZA65_RS19660 0.14 +1.7 4,257,282 - DZA65_RS19660 0.14 -1.0 4,257,282 - DZA65_RS19660 0.14 +0.4 4,257,282 - DZA65_RS19660 0.14 +0.4 4,257,282 - DZA65_RS19660 0.14 +0.6 4,257,282 - DZA65_RS19660 0.14 -0.5 4,257,282 - DZA65_RS19660 0.14 +0.7 4,257,284 + DZA65_RS19660 0.15 -0.4 4,257,284 + DZA65_RS19660 0.15 +0.4 4,257,284 + DZA65_RS19660 0.15 -0.1 4,257,284 + DZA65_RS19660 0.15 +4.3 4,257,284 + DZA65_RS19660 0.15 -0.0 4,257,284 + DZA65_RS19660 0.15 -1.2 4,257,284 + DZA65_RS19660 0.15 +0.7 4,257,284 + DZA65_RS19660 0.15 +0.2 4,257,284 + DZA65_RS19660 0.15 -1.6 4,257,284 + DZA65_RS19660 0.15 -0.4 4,257,284 + DZA65_RS19660 0.15 +1.3 4,257,285 - DZA65_RS19660 0.16 +0.1 4,257,285 - DZA65_RS19660 0.16 +1.2 4,257,285 - DZA65_RS19660 0.16 +0.4 4,257,285 - DZA65_RS19660 0.16 -1.2 4,257,310 - DZA65_RS19660 0.28 -0.6 4,257,334 - DZA65_RS19660 0.40 -1.0 4,257,354 + DZA65_RS19660 0.50 -0.6 4,257,355 - DZA65_RS19660 0.51 +0.2 4,257,378 + DZA65_RS19660 0.62 +1.6 4,257,379 - DZA65_RS19660 0.63 +0.9 4,257,379 - DZA65_RS19660 0.63 -0.5 4,257,381 + DZA65_RS19660 0.64 -0.2 4,257,392 - DZA65_RS19660 0.69 -0.1 4,257,411 + DZA65_RS19660 0.79 +0.6 4,257,412 - DZA65_RS19660 0.79 +0.7 4,257,412 - DZA65_RS19660 0.79 +0.4 4,257,412 - DZA65_RS19660 0.79 +1.5 4,257,412 - DZA65_RS19660 0.79 +0.4 4,257,412 - DZA65_RS19660 0.79 +0.4 4,257,412 - DZA65_RS19660 0.79 +0.0 4,257,415 + DZA65_RS19660 0.81 -0.1 4,257,453 + +0.6 4,257,454 - -1.2 4,257,454 - +0.9 4,257,505 + -1.5 4,257,506 - +0.3 4,257,515 + -0.9 4,257,522 + +2.0 4,257,522 + -0.5 4,257,522 + +1.2 4,257,552 - +0.9 4,257,721 - DZA65_RS19665 0.21 -0.6 4,257,721 - DZA65_RS19665 0.21 +0.6 4,257,862 - DZA65_RS19665 0.35 +1.8 4,257,913 - DZA65_RS19665 0.40 +1.4
Or see this region's nucleotide sequence