Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19465

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,210,836	-				+1.4
4,210,838	+				-0.2
4,210,838	+				+1.4
4,210,838	+				-0.4
4,210,838	+				+1.2
4,210,838	+				-2.2
4,210,838	+				-0.3
4,210,838	+				-0.6
4,210,839	-				-1.0
4,210,839	-				+2.0
4,210,839	-				-1.4
4,210,839	-				-1.9
4,210,839	-				+0.3
4,210,839	-				+1.3
4,210,839	-				+0.1
4,210,839	-				+0.8
4,210,849	+		DZA65_RS19460	0.10	+0.8
4,210,850	-		DZA65_RS19460	0.10	-0.5
4,210,850	-		DZA65_RS19460	0.10	-0.5
4,210,858	+		DZA65_RS19460	0.12	-0.2
4,210,860	+		DZA65_RS19460	0.12	-0.2
4,210,860	+		DZA65_RS19460	0.12	+0.6
4,210,860	+		DZA65_RS19460	0.12	-0.3
4,210,860	+		DZA65_RS19460	0.12	+1.2
4,210,860	+				+0.4
4,210,860	+		DZA65_RS19460	0.12	+0.8
4,210,860	+		DZA65_RS19460	0.12	-0.3
4,210,860	+		DZA65_RS19460	0.12	-0.2
4,210,860	+		DZA65_RS19460	0.12	-2.4
4,210,860	+		DZA65_RS19460	0.12	+2.0
4,210,860	+		DZA65_RS19460	0.12	+0.4
4,210,861	-				+2.0
4,210,861	-		DZA65_RS19460	0.12	+0.8
4,210,861	-		DZA65_RS19460	0.12	+1.2
4,210,861	-		DZA65_RS19460	0.12	-0.6
4,210,861	-		DZA65_RS19460	0.12	-0.3
4,210,861	-		DZA65_RS19460	0.12	-0.6
4,210,861	-		DZA65_RS19460	0.12	-0.7
4,210,861	-		DZA65_RS19460	0.12	-0.7
4,210,861	-		DZA65_RS19460	0.12	-0.1
4,211,006	-		DZA65_RS19460	0.37	+0.5
4,211,204	+		DZA65_RS19460	0.70	-0.7
4,211,205	-		DZA65_RS19460	0.71	+0.0
4,211,205	-		DZA65_RS19460	0.71	-0.8
4,211,205	-		DZA65_RS19460	0.71	-0.0
4,211,205	-		DZA65_RS19460	0.71	+0.3
4,211,205	-		DZA65_RS19460	0.71	+0.4
4,211,205	-		DZA65_RS19460	0.71	+0.4
4,211,319	+				+0.1
4,211,347	+				-1.4
4,211,347	+				-0.8
4,211,347	+				+0.4
4,211,348	-				-1.2
4,211,348	-				-1.3
4,211,348	-				-0.8
4,211,352	-				+0.3
4,211,352	-				+0.3
4,211,352	-				+0.4
4,211,352	-				+0.5
4,211,366	+				+0.4
4,211,366	+				+0.3
4,211,366	+				+0.5
4,211,366	+				+0.5
4,211,366	+				-0.4
4,211,366	+				-0.1
4,211,366	+				+1.5
4,211,366	+				-1.3
4,211,367	-				+1.3
4,211,367	-				+1.3
4,211,367	-				-0.6
4,211,367	-				+1.2
4,211,367	-				+1.4
4,211,367	-				-0.3
4,211,367	-				+0.8
4,211,377	+				+1.1
4,211,377	+				-0.0
4,211,377	+				+0.6
4,211,377	+				-0.5
4,211,378	-				+1.2
4,211,378	-				+0.7
4,211,421	+				+0.7
4,211,421	+				+0.4
4,211,421	+				+0.1
4,211,422	-				+0.6
4,211,437	+				+0.1
4,211,520	+				+0.4
4,211,521	-				-0.7
4,211,528	-				+0.1
4,211,543	+				-0.1
4,211,564	+				+0.4
4,211,564	+				-1.2
4,211,576	+				+0.4
4,211,577	-				-1.6
4,211,582	+				+0.4
4,211,582	+				-0.0
4,211,582	+				+0.9
4,211,583	-				+2.4
4,211,586	+				-0.2
4,211,586	+				+0.1
4,211,586	+				-0.3
4,211,586	+				+0.4
4,211,586	+				+0.8
4,211,586	+				+0.1
4,211,586	+				-0.1
4,211,586	+				-0.0
4,211,586	+				-0.8
4,211,586	+				-0.5
4,211,586	+				+1.2
4,211,587	-				+0.3
4,211,587	-				-0.8
4,211,587	-				+0.3
4,211,587	-				-0.4
4,211,594	+				-1.6
4,211,594	+				+1.4
4,211,595	-				-2.4
4,211,670	+				-0.2
4,211,686	+				+0.4
4,211,686	+				+0.6
4,211,690	+				-0.9
4,211,690	+				+0.6
4,211,690	+				+1.3
4,211,690	+				-0.5
4,211,690	+				+0.1
4,211,691	-				-0.2
4,211,691	-				+0.0
4,211,702	+				-0.1
4,211,702	+				+0.1
4,211,702	+				-0.5
4,211,702	+				+1.0
4,211,702	+				+0.6
4,211,702	+				+0.1
4,211,703	-				-0.5
4,211,703	-				-0.9
4,211,703	-				+0.1
4,211,703	-				-0.8
4,211,703	-				-1.3
4,211,750	+				-0.8
4,211,750	+				-0.4
4,211,751	-				-1.3
4,211,751	-				-0.6
4,211,828	+				+0.5
4,211,828	+				+1.4
4,211,925	+		DZA65_RS19465	0.10	-1.6
4,211,925	+		DZA65_RS19465	0.10	-0.1
4,211,926	-		DZA65_RS19465	0.10	-1.4
4,211,926	-		DZA65_RS19465	0.10	-1.1
4,211,926	-		DZA65_RS19465	0.10	+0.8
4,211,936	+		DZA65_RS19465	0.11	-0.5
4,211,937	-		DZA65_RS19465	0.12	-1.9
4,211,937	-		DZA65_RS19465	0.12	-2.4
4,211,987	+		DZA65_RS19465	0.17	-0.0
4,211,987	+		DZA65_RS19465	0.17	-2.6
4,211,987	+		DZA65_RS19465	0.17	-0.9
4,211,987	+		DZA65_RS19465	0.17	-1.9
4,211,988	-		DZA65_RS19465	0.17	-1.1
4,211,988	-		DZA65_RS19465	0.17	-0.2
4,211,988	-		DZA65_RS19465	0.17	-0.7
4,211,988	-		DZA65_RS19465	0.17	-1.4
4,211,997	+		DZA65_RS19465	0.18	-0.3
4,211,998	-				-0.6
4,211,998	-		DZA65_RS19465	0.18	-1.1
4,211,998	-		DZA65_RS19465	0.18	-1.0
4,212,129	-		DZA65_RS19465	0.32	-0.6
4,212,143	+		DZA65_RS19465	0.33	-2.2
4,212,144	-		DZA65_RS19465	0.33	-0.8
4,212,144	-		DZA65_RS19465	0.33	-1.5
4,212,144	-		DZA65_RS19465	0.33	-1.3
4,212,146	+		DZA65_RS19465	0.33	-3.2
4,212,146	+		DZA65_RS19465	0.33	-0.6
4,212,146	+		DZA65_RS19465	0.33	-2.6
4,212,147	-		DZA65_RS19465	0.34	+0.1
4,212,147	-		DZA65_RS19465	0.34	-0.9
4,212,147	-		DZA65_RS19465	0.34	-2.5
4,212,147	-		DZA65_RS19465	0.34	+1.1
4,212,147	-		DZA65_RS19465	0.34	-1.3
4,212,152	+		DZA65_RS19465	0.34	+1.0
4,212,152	+		DZA65_RS19465	0.34	+0.4
4,212,152	+		DZA65_RS19465	0.34	-1.4
4,212,152	+		DZA65_RS19465	0.34	-1.6
4,212,153	-		DZA65_RS19465	0.34	-0.1
4,212,153	-		DZA65_RS19465	0.34	-0.6
4,212,153	-		DZA65_RS19465	0.34	-0.6
4,212,153	-		DZA65_RS19465	0.34	+0.2
4,212,153	-		DZA65_RS19465	0.34	+0.2
4,212,224	+		DZA65_RS19465	0.42	-0.9
4,212,224	+		DZA65_RS19465	0.42	-2.6
4,212,224	+		DZA65_RS19465	0.42	+0.7
4,212,224	+		DZA65_RS19465	0.42	-1.2
4,212,225	-		DZA65_RS19465	0.42	+0.6
4,212,225	-		DZA65_RS19465	0.42	-0.6
4,212,225	-		DZA65_RS19465	0.42	-0.0
4,212,237	+		DZA65_RS19465	0.43	-0.5
4,212,238	-		DZA65_RS19465	0.43	-1.2
4,212,238	-		DZA65_RS19465	0.43	-0.5
4,212,238	-		DZA65_RS19465	0.43	+0.6
4,212,238	-		DZA65_RS19465	0.43	-2.6
4,212,364	-		DZA65_RS19465	0.56	-0.4
4,212,364	-		DZA65_RS19465	0.56	-1.2
4,212,425	+		DZA65_RS19465	0.63	-1.2
4,212,425	+		DZA65_RS19465	0.63	-0.3
4,212,426	-		DZA65_RS19465	0.63	-0.3
4,212,426	-		DZA65_RS19465	0.63	-3.3
4,212,426	-		DZA65_RS19465	0.63	-1.3
4,212,426	-		DZA65_RS19465	0.63	-2.2
4,212,426	-		DZA65_RS19465	0.63	-0.6
4,212,426	-		DZA65_RS19465	0.63	-1.6
4,212,426	-		DZA65_RS19465	0.63	-0.1
4,212,473	+		DZA65_RS19465	0.68	-2.2
4,212,473	+		DZA65_RS19465	0.68	-0.9
4,212,473	+		DZA65_RS19465	0.68	-0.2
4,212,474	-		DZA65_RS19465	0.68	-1.0
4,212,540	+		DZA65_RS19465	0.75	-1.5
4,212,541	-		DZA65_RS19465	0.75	-0.8
4,212,541	-		DZA65_RS19465	0.75	+1.0
4,212,541	-		DZA65_RS19465	0.75	-0.4
4,212,638	+		DZA65_RS19465	0.85	-2.1
4,212,702	-				-1.4
4,212,843	+				+0.2
4,212,843	+				+0.0
4,212,844	-				+0.1
4,212,844	-				-1.2
4,212,844	-				+0.2
4,212,979	+				-0.6
4,212,979	+				+0.9
4,212,998	+				-0.3
4,213,043	+				-1.1
4,213,044	-				-0.6
4,213,044	-				-0.1
4,213,048	+				-1.3
4,213,048	+				+0.6
4,213,048	+				+0.8
4,213,048	+				-0.6
4,213,048	+				+0.8
4,213,048	+				+0.5
4,213,049	-				+1.4
4,213,049	-				+0.3
4,213,049	-				+0.5
4,213,049	-				-0.2
4,213,049	-				+0.5
4,213,049	-				-0.1
4,213,074	+				-1.0
4,213,080	+				-2.9
4,213,080	+				+0.0
4,213,080	+				+0.4
4,213,081	-				+0.3
4,213,081	-				-0.6
4,213,117	+				+0.4
4,213,117	+				-1.1
4,213,117	+				-0.6
4,213,117	+				+0.4
4,213,117	+				-0.2
4,213,117	+				+0.9
4,213,117	+				-0.6
4,213,117	+				+0.4
4,213,117	+				-0.2
4,213,117	+				+0.0
4,213,118	-				-0.6
4,213,118	-				-2.8
4,213,118	-				-0.8
4,213,118	-				-0.3
4,213,168	+		DZA65_RS19470	0.11	+0.3
4,213,168	+		DZA65_RS19470	0.11	-0.9
4,213,168	+		DZA65_RS19470	0.11	+2.3
4,213,169	-		DZA65_RS19470	0.11	-0.6
4,213,342	+		DZA65_RS19470	0.33	-1.1
4,213,342	+		DZA65_RS19470	0.33	-2.2
4,213,342	+		DZA65_RS19470	0.33	-1.5
4,213,342	+		DZA65_RS19470	0.33	-0.6
4,213,343	-		DZA65_RS19470	0.34	+0.0
4,213,343	-		DZA65_RS19470	0.34	-0.4
4,213,343	-		DZA65_RS19470	0.34	-1.9
4,213,343	-		DZA65_RS19470	0.34	-1.9
4,213,343	-		DZA65_RS19470	0.34	-1.5
4,213,407	+		DZA65_RS19470	0.42	-0.8
4,213,407	+		DZA65_RS19470	0.42	-0.1
4,213,408	-		DZA65_RS19470	0.42	-1.3
4,213,408	-		DZA65_RS19470	0.42	-2.2
4,213,408	-		DZA65_RS19470	0.42	-1.4
4,213,423	+		DZA65_RS19470	0.44	-0.0
4,213,510	+		DZA65_RS19470	0.55	-0.6
4,213,510	+		DZA65_RS19470	0.55	+0.9
4,213,511	-		DZA65_RS19470	0.55	-0.1
4,213,511	-		DZA65_RS19470	0.55	+0.4
4,213,511	-		DZA65_RS19470	0.55	+0.6
4,213,511	-		DZA65_RS19470	0.55	-0.6
4,213,575	+		DZA65_RS19470	0.63	+0.8
4,213,575	+		DZA65_RS19470	0.63	-2.9
4,213,575	+		DZA65_RS19470	0.63	+0.1
4,213,575	+		DZA65_RS19470	0.63	-0.8
4,213,576	-		DZA65_RS19470	0.63	-1.9
4,213,603	+		DZA65_RS19470	0.67	-1.6
4,213,603	+		DZA65_RS19470	0.67	+1.1
4,213,604	-		DZA65_RS19470	0.67	+0.0
4,213,699	+		DZA65_RS19470	0.79	+0.1
4,213,699	+		DZA65_RS19470	0.79	+0.2
4,213,700	-		DZA65_RS19470	0.79	-0.5
4,213,700	-		DZA65_RS19470	0.79	-1.2