Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18880

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,077,699	+		DZA65_RS18875	0.83	+0.7
4,077,700	-		DZA65_RS18875	0.83	-0.3
4,077,760	-		DZA65_RS18875	0.85	+2.5
4,077,760	-		DZA65_RS18875	0.85	-0.2
4,077,804	-		DZA65_RS18875	0.87	-1.2
4,077,823	+		DZA65_RS18875	0.88	+0.6
4,077,823	+		DZA65_RS18875	0.88	-0.2
4,077,823	+		DZA65_RS18875	0.88	-1.0
4,077,823	+		DZA65_RS18875	0.88	+0.9
4,077,823	+		DZA65_RS18875	0.88	+0.4
4,077,823	+		DZA65_RS18875	0.88	-0.6
4,077,823	+		DZA65_RS18875	0.88	-1.8
4,077,823	+		DZA65_RS18875	0.88	+0.5
4,077,823	+		DZA65_RS18875	0.88	+2.0
4,077,823	+		DZA65_RS18875	0.88	-0.6
4,077,823	+		DZA65_RS18875	0.88	+0.5
4,077,824	-		DZA65_RS18875	0.88	+0.4
4,077,824	-		DZA65_RS18875	0.88	-1.9
4,077,824	-		DZA65_RS18875	0.88	-0.3
4,077,824	-		DZA65_RS18875	0.88	+0.1
4,077,824	-				-0.6
4,077,824	-		DZA65_RS18875	0.88	+0.6
4,077,824	-		DZA65_RS18875	0.88	-0.6
4,077,824	-		DZA65_RS18875	0.88	-0.4
4,077,824	-		DZA65_RS18875	0.88	+0.4
4,077,894	+				-1.2
4,077,894	+				+1.1
4,077,946	+				+0.6
4,077,993	+				-0.2
4,077,996	+				+1.2
4,078,008	+				-1.2
4,078,008	+				+1.0
4,078,008	+				+0.1
4,078,008	+				-0.2
4,078,009	-				-0.8
4,078,009	-				-0.3
4,078,046	+				+0.2
4,078,046	+				-3.2
4,078,046	+				-0.6
4,078,046	+				+0.9
4,078,046	+				+0.2
4,078,046	+				-1.4
4,078,047	-				+0.1
4,078,047	-				-0.9
4,078,047	-				+0.6
4,078,047	-				-0.8
4,078,047	-				-0.0
4,078,071	+				-0.6
4,078,071	+				+0.4
4,078,072	-				-0.8
4,078,072	-				-1.2
4,078,201	+				+0.6
4,078,205	+				+1.1
4,078,205	+				+1.2
4,078,215	-				-1.9
4,078,246	+				-0.7
4,078,246	+				+0.4
4,078,264	+				-2.2
4,078,372	-				+1.8
4,078,382	-				-0.4
4,078,396	-				-0.3
4,078,443	+				-1.9
4,078,443	+				-0.9
4,078,445	+				-0.9
4,078,445	+				-0.3
4,078,446	-				-0.2
4,078,446	-				+1.1
4,078,446	-				-0.2
4,078,446	-				+1.7
4,078,501	+				+0.2
4,078,501	+				-0.5
4,078,501	+				+0.8
4,078,502	-				-0.2
4,078,505	+				-0.4
4,078,547	+				-2.2
4,078,548	-				-2.2
4,078,548	-				+0.4
4,078,548	-				-0.6
4,078,550	-				+0.4
4,078,559	-				-0.1
4,078,561	+				-0.1
4,078,566	+				-0.0
4,078,567	-				-1.6
4,078,567	-				-0.2
4,078,567	-				-1.2
4,078,605	+				-0.2
4,078,606	-				+0.8
4,078,607	+				+0.9
4,078,607	+				+0.6
4,078,607	+				-0.9
4,078,607	+				+0.2
4,078,607	+				+0.4
4,078,607	+				+0.5
4,078,607	+				+0.1
4,078,607	+				+0.1
4,078,607	+				+0.7
4,078,607	+				+0.2
4,078,607	+				+0.9
4,078,608	-				+0.2
4,078,608	-				-0.2
4,078,608	-				+0.3
4,078,608	-				+0.1
4,078,608	-				+0.6
4,078,608	-				+1.4
4,078,608	-				+0.7
4,078,608	-				+1.1
4,078,609	+				+0.0
4,078,609	+				-0.0
4,078,609	+				-0.2
4,078,609	+				+1.0
4,078,609	+				-0.1
4,078,609	+				-0.3
4,078,609	+				-1.2
4,078,609	+				-0.9
4,078,609	+				+0.1
4,078,609	+				-0.6
4,078,609	+				+1.4
4,078,609	+				+0.4
4,078,609	+				+0.6
4,078,609	+				-1.4
4,078,609	+				+1.4
4,078,609	+				+0.2
4,078,609	+				-0.7
4,078,609	+				+1.5
4,078,609	+				-2.6
4,078,609	+				-1.8
4,078,610	-				-1.2
4,078,610	-				-0.2
4,078,610	-				-0.3
4,078,610	-				-0.3
4,078,610	-				+0.6
4,078,610	-				-1.9
4,078,610	-				+0.5
4,078,610	-				+0.3
4,078,610	-				-0.5
4,078,610	-				-1.1
4,078,610	-				-1.6
4,078,610	-				-1.6
4,078,610	-				-1.2
4,078,610	-				-0.8
4,078,610	-				-0.6
4,078,610	-				-0.3
4,078,610	-				-0.0
4,078,611	+				+1.0
4,078,611	+				-0.3
4,078,611	+				-0.6
4,078,611	+				+0.4
4,078,612	-				-0.2
4,078,612	-				-0.8
4,078,612	-				-0.6
4,078,612	-				+0.0
4,078,612	-				-0.2
4,078,612	-				-0.6
4,078,670	+				-0.6
4,078,725	-				+1.3
4,078,725	-				-0.1
4,078,732	+				-0.3
4,078,732	+				+0.3
4,078,733	-				+2.0
4,078,734	+				+1.1
4,078,766	+		DZA65_RS18880	0.10	-0.3
4,078,926	+		DZA65_RS18880	0.22	-0.2
4,078,926	+		DZA65_RS18880	0.22	-0.4
4,078,927	-		DZA65_RS18880	0.22	-0.4
4,078,947	+		DZA65_RS18880	0.24	+0.1
4,078,947	+		DZA65_RS18880	0.24	+1.2
4,078,947	+		DZA65_RS18880	0.24	-0.3
4,078,947	+		DZA65_RS18880	0.24	-0.5
4,078,948	-		DZA65_RS18880	0.24	+1.6
4,078,948	-		DZA65_RS18880	0.24	+1.0
4,078,948	-		DZA65_RS18880	0.24	+0.4
4,078,948	-		DZA65_RS18880	0.24	-1.7
4,079,020	+		DZA65_RS18880	0.29	-1.2
4,079,020	+		DZA65_RS18880	0.29	+0.6
4,079,024	+		DZA65_RS18880	0.30	+0.7
4,079,024	+		DZA65_RS18880	0.30	+0.4
4,079,024	+		DZA65_RS18880	0.30	-2.1
4,079,024	+		DZA65_RS18880	0.30	-1.1
4,079,024	+		DZA65_RS18880	0.30	+0.1
4,079,024	+		DZA65_RS18880	0.30	-0.4
4,079,025	-		DZA65_RS18880	0.30	+0.1
4,079,025	-		DZA65_RS18880	0.30	-3.5
4,079,025	-		DZA65_RS18880	0.30	-2.2
4,079,130	+		DZA65_RS18880	0.38	-2.8
4,079,131	-		DZA65_RS18880	0.38	-0.3
4,079,131	-		DZA65_RS18880	0.38	-0.7
4,079,238	+		DZA65_RS18880	0.46	-0.1
4,079,238	+		DZA65_RS18880	0.46	+0.6
4,079,239	-		DZA65_RS18880	0.46	-1.6
4,079,239	-		DZA65_RS18880	0.46	-1.1
4,079,239	-		DZA65_RS18880	0.46	-0.4
4,079,244	+		DZA65_RS18880	0.46	-0.1
4,079,382	+		DZA65_RS18880	0.57	-0.3
4,079,382	+		DZA65_RS18880	0.57	-0.6
4,079,383	-		DZA65_RS18880	0.57	-2.4
4,079,427	+		DZA65_RS18880	0.60	-0.8
4,079,427	+		DZA65_RS18880	0.60	-0.0
4,079,427	+		DZA65_RS18880	0.60	-0.1
4,079,427	+		DZA65_RS18880	0.60	-0.4
4,079,428	-		DZA65_RS18880	0.60	+0.1
4,079,428	-		DZA65_RS18880	0.60	-0.9
4,079,428	-		DZA65_RS18880	0.60	+0.1
4,079,428	-		DZA65_RS18880	0.60	+0.4
4,079,428	-		DZA65_RS18880	0.60	-0.5
4,079,428	-		DZA65_RS18880	0.60	+1.0
4,079,428	-		DZA65_RS18880	0.60	-0.3
4,079,546	+		DZA65_RS18880	0.69	+1.0
4,079,546	+		DZA65_RS18880	0.69	-0.6
4,079,649	-				-0.9
4,079,649	-		DZA65_RS18880	0.77	-1.8
4,079,649	-		DZA65_RS18880	0.77	-0.2
4,079,649	-		DZA65_RS18880	0.77	+0.4
4,079,649	-		DZA65_RS18880	0.77	+0.3
4,079,666	+		DZA65_RS18880	0.79	+1.2
4,079,667	-		DZA65_RS18880	0.79	-0.9
4,079,667	-		DZA65_RS18880	0.79	-0.7
4,079,667	-		DZA65_RS18880	0.79	-0.4
4,079,683	-		DZA65_RS18880	0.80	-0.6
4,079,754	+		DZA65_RS18880	0.85	+0.6
4,079,754	+		DZA65_RS18880	0.85	+0.2
4,079,754	+		DZA65_RS18880	0.85	-1.2
4,079,755	-		DZA65_RS18880	0.85	-0.8
4,079,755	-		DZA65_RS18880	0.85	-0.2
4,079,755	-		DZA65_RS18880	0.85	-1.1
4,079,755	-		DZA65_RS18880	0.85	+1.0
4,079,802	+		DZA65_RS18880	0.89	-0.4
4,079,833	-				+0.4
4,079,833	-				-0.1
4,079,833	-				-0.2
4,079,853	+				+0.9
4,079,853	+				-0.5
4,079,854	-				-1.7
4,079,862	+				+1.1
4,079,862	+				+1.1
4,079,863	-				-0.9
4,079,863	-				+0.2
4,079,863	-				+2.1
4,080,056	+		DZA65_RS18885	0.18	+0.7
4,080,057	-		DZA65_RS18885	0.19	+1.1
4,080,057	-		DZA65_RS18885	0.19	-0.8
4,080,184	+		DZA65_RS18885	0.42	-2.8
4,080,205	+		DZA65_RS18885	0.46	+0.2
4,080,212	+		DZA65_RS18885	0.47	-0.8
4,080,212	+		DZA65_RS18885	0.47	+0.1
4,080,212	+		DZA65_RS18885	0.47	-1.4
4,080,212	+		DZA65_RS18885	0.47	-0.1
4,080,212	+		DZA65_RS18885	0.47	-1.9
4,080,212	+		DZA65_RS18885	0.47	+0.4
4,080,213	-		DZA65_RS18885	0.47	+0.2
4,080,213	-		DZA65_RS18885	0.47	+0.8
4,080,312	+		DZA65_RS18885	0.65	-0.2
4,080,312	+		DZA65_RS18885	0.65	+0.0
4,080,313	-		DZA65_RS18885	0.65	+0.6
4,080,313	-		DZA65_RS18885	0.65	-1.2
4,080,373	+		DZA65_RS18885	0.76	+0.2
4,080,373	+		DZA65_RS18885	0.76	-0.6
4,080,374	-		DZA65_RS18885	0.76	+0.4
4,080,374	-		DZA65_RS18885	0.76	-2.1
4,080,478	-				-0.5
4,080,478	-				+0.4
4,080,514	+				-0.2
4,080,514	+				+0.1
4,080,514	+				-1.6
4,080,514	+				+0.1
4,080,515	-				-1.2
4,080,515	-				-0.0
4,080,515	-				+0.4
4,080,515	-				+0.6
4,080,515	-				+1.0
4,080,515	-				+0.6
4,080,533	+				+0.2
4,080,533	+				-0.2
4,080,533	+				+0.4
4,080,533	+				+0.4
4,080,534	-				+0.2
4,080,534	-				+0.2
4,080,625	+		DZA65_RS18890	0.14	-0.3
4,080,626	-		DZA65_RS18890	0.14	-0.0
4,080,770	+		DZA65_RS18890	0.30	-0.8
4,080,800	+		DZA65_RS18890	0.34	+0.4
4,080,816	+		DZA65_RS18890	0.35	-0.4
4,080,816	+		DZA65_RS18890	0.35	-1.9
4,080,816	+		DZA65_RS18890	0.35	+0.2
4,080,816	+		DZA65_RS18890	0.35	+0.6
4,080,817	-		DZA65_RS18890	0.35	-0.8
4,080,817	-		DZA65_RS18890	0.35	-1.6
4,080,817	-		DZA65_RS18890	0.35	+1.1
4,080,817	-		DZA65_RS18890	0.35	+0.1
4,080,817	-		DZA65_RS18890	0.35	-0.9
4,080,820	+		DZA65_RS18890	0.36	-0.8
4,080,820	+		DZA65_RS18890	0.36	-0.1
4,080,821	-		DZA65_RS18890	0.36	-1.0
4,080,821	-		DZA65_RS18890	0.36	+0.3