Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18855

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,070,233	-				-0.5
4,070,396	+		DZA65_RS18850	0.20	+0.0
4,070,396	+		DZA65_RS18850	0.20	-0.8
4,070,396	+		DZA65_RS18850	0.20	+0.4
4,070,397	-		DZA65_RS18850	0.20	-0.0
4,070,397	-		DZA65_RS18850	0.20	-1.4
4,070,688	+		DZA65_RS18850	0.48	-0.5
4,070,689	-		DZA65_RS18850	0.48	+0.0
4,070,696	-		DZA65_RS18850	0.49	-0.5
4,070,696	-		DZA65_RS18850	0.49	+0.8
4,070,719	+		DZA65_RS18850	0.51	-0.6
4,070,719	+		DZA65_RS18850	0.51	-1.2
4,070,719	+		DZA65_RS18850	0.51	-1.8
4,070,719	+		DZA65_RS18850	0.51	-0.2
4,070,719	+		DZA65_RS18850	0.51	-0.6
4,070,719	+		DZA65_RS18850	0.51	+2.4
4,070,720	-		DZA65_RS18850	0.51	-0.6
4,070,720	-		DZA65_RS18850	0.51	-0.4
4,070,720	-		DZA65_RS18850	0.51	-3.1
4,070,722	+		DZA65_RS18850	0.52	-0.1
4,070,722	+		DZA65_RS18850	0.52	-0.0
4,070,722	+		DZA65_RS18850	0.52	-0.3
4,070,722	+		DZA65_RS18850	0.52	+0.2
4,070,722	+		DZA65_RS18850	0.52	-0.2
4,070,722	+		DZA65_RS18850	0.52	-0.6
4,070,723	-		DZA65_RS18850	0.52	-1.6
4,070,723	-		DZA65_RS18850	0.52	-0.6
4,070,723	-		DZA65_RS18850	0.52	+2.0
4,070,723	-		DZA65_RS18850	0.52	+0.4
4,070,723	-		DZA65_RS18850	0.52	-2.2
4,070,723	-		DZA65_RS18850	0.52	-2.5
4,070,723	-		DZA65_RS18850	0.52	+0.6
4,070,723	-		DZA65_RS18850	0.52	-2.8
4,070,723	-		DZA65_RS18850	0.52	-1.8
4,070,723	-		DZA65_RS18850	0.52	+0.5
4,070,723	-		DZA65_RS18850	0.52	+0.1
4,070,723	-		DZA65_RS18850	0.52	+2.1
4,070,723	-		DZA65_RS18850	0.52	+1.1
4,070,744	+		DZA65_RS18850	0.54	+1.1
4,070,745	-		DZA65_RS18850	0.54	-0.3
4,070,788	-		DZA65_RS18850	0.58	-0.1
4,070,990	+		DZA65_RS18850	0.78	+0.4
4,070,990	+		DZA65_RS18850	0.78	-0.8
4,070,991	-		DZA65_RS18850	0.78	+0.4
4,070,991	-		DZA65_RS18850	0.78	-0.2
4,070,991	-		DZA65_RS18850	0.78	-1.1
4,071,032	+		DZA65_RS18850	0.82	+0.4
4,071,032	+		DZA65_RS18850	0.82	-0.2
4,071,032	+		DZA65_RS18850	0.82	-2.8
4,071,032	+		DZA65_RS18850	0.82	+0.5
4,071,032	+		DZA65_RS18850	0.82	+1.1
4,071,032	+		DZA65_RS18850	0.82	-1.8
4,071,032	+		DZA65_RS18850	0.82	+1.4
4,071,032	+		DZA65_RS18850	0.82	-0.0
4,071,033	-		DZA65_RS18850	0.82	-0.2
4,071,033	-		DZA65_RS18850	0.82	+0.1
4,071,033	-		DZA65_RS18850	0.82	-2.2
4,071,033	-		DZA65_RS18850	0.82	-0.5
4,071,033	-		DZA65_RS18850	0.82	-0.6
4,071,033	-		DZA65_RS18850	0.82	+0.0
4,071,033	-		DZA65_RS18850	0.82	+0.2
4,071,033	-		DZA65_RS18850	0.82	-1.2
4,071,033	-		DZA65_RS18850	0.82	+1.2
4,071,033	-		DZA65_RS18850	0.82	-0.1
4,071,033	-		DZA65_RS18850	0.82	+0.6
4,071,077	+		DZA65_RS18850	0.86	-0.4
4,071,077	+		DZA65_RS18850	0.86	+0.2
4,071,077	+		DZA65_RS18850	0.86	-2.4
4,071,077	+		DZA65_RS18850	0.86	-0.5
4,071,077	+		DZA65_RS18850	0.86	-0.5
4,071,077	+		DZA65_RS18850	0.86	-0.5
4,071,077	+		DZA65_RS18850	0.86	+0.4
4,071,078	-		DZA65_RS18850	0.86	-1.2
4,071,078	-		DZA65_RS18850	0.86	-0.5
4,071,078	-		DZA65_RS18850	0.86	-0.2
4,071,078	-		DZA65_RS18850	0.86	-0.2
4,071,114	-		DZA65_RS18850	0.90	+1.8
4,071,127	-				-0.1
4,071,127	-				-2.2
4,071,168	+				-0.6
4,071,223	+				+0.1
4,071,223	+				+0.7
4,071,224	-				-0.4
4,071,224	-				-0.9
4,071,259	+				+0.3
4,071,259	+				+0.2
4,071,259	+				+0.0
4,071,259	+				+1.4
4,071,260	-				+0.2
4,071,260	-				+0.4
4,071,260	-				-1.0
4,071,325	+				-0.4
4,071,325	+				-0.9
4,071,325	+				-0.9
4,071,326	-				-0.6
4,071,326	-				-1.0
4,071,326	-				-2.4
4,071,326	-				-0.4
4,071,326	-				-0.4
4,071,326	-				+0.5
4,071,502	+		DZA65_RS18855	0.27	-0.0
4,071,502	+		DZA65_RS18855	0.27	-0.1
4,071,503	-		DZA65_RS18855	0.27	-3.1
4,071,503	-		DZA65_RS18855	0.27	+1.0
4,071,571	+		DZA65_RS18855	0.33	-0.9
4,071,571	+		DZA65_RS18855	0.33	+0.2
4,071,571	+		DZA65_RS18855	0.33	+2.4
4,071,571	+		DZA65_RS18855	0.33	-1.0
4,071,571	+		DZA65_RS18855	0.33	-0.4
4,071,572	-		DZA65_RS18855	0.33	-1.0
4,071,572	-		DZA65_RS18855	0.33	+0.3
4,071,572	-		DZA65_RS18855	0.33	-2.4
4,071,751	+		DZA65_RS18855	0.50	-0.1
4,071,751	+		DZA65_RS18855	0.50	+0.5
4,071,752	-		DZA65_RS18855	0.50	-2.3
4,071,752	-		DZA65_RS18855	0.50	-0.0
4,071,752	-		DZA65_RS18855	0.50	+0.7
4,071,827	+		DZA65_RS18855	0.57	-0.4
4,071,827	+		DZA65_RS18855	0.57	+0.0
4,071,838	+		DZA65_RS18855	0.58	-0.5
4,071,838	+		DZA65_RS18855	0.58	-0.3
4,071,838	+		DZA65_RS18855	0.58	-0.6
4,071,839	-		DZA65_RS18855	0.59	+1.3
4,071,839	-		DZA65_RS18855	0.59	-0.5
4,071,874	+		DZA65_RS18855	0.62	-0.3
4,071,874	+		DZA65_RS18855	0.62	-0.4
4,071,874	+		DZA65_RS18855	0.62	-0.6
4,071,874	+		DZA65_RS18855	0.62	-2.9
4,071,874	+		DZA65_RS18855	0.62	-1.9
4,071,874	+		DZA65_RS18855	0.62	-1.0
4,071,874	+		DZA65_RS18855	0.62	+0.7
4,071,874	+		DZA65_RS18855	0.62	+1.0
4,071,874	+		DZA65_RS18855	0.62	-0.0
4,071,874	+		DZA65_RS18855	0.62	+0.6
4,071,874	+		DZA65_RS18855	0.62	+0.4
4,071,874	+		DZA65_RS18855	0.62	+0.0
4,071,874	+		DZA65_RS18855	0.62	-0.4
4,071,874	+		DZA65_RS18855	0.62	+1.4
4,071,875	-		DZA65_RS18855	0.62	+0.4
4,071,875	-		DZA65_RS18855	0.62	+1.4
4,071,875	-		DZA65_RS18855	0.62	-1.6
4,071,875	-		DZA65_RS18855	0.62	-1.5
4,071,875	-		DZA65_RS18855	0.62	-0.6
4,071,875	-		DZA65_RS18855	0.62	+1.2
4,071,875	-		DZA65_RS18855	0.62	+1.4
4,071,875	-		DZA65_RS18855	0.62	-0.2
4,071,875	-		DZA65_RS18855	0.62	+0.2
4,071,875	-		DZA65_RS18855	0.62	-0.0
4,071,875	-		DZA65_RS18855	0.62	-1.4
4,071,875	-		DZA65_RS18855	0.62	-1.6
4,072,263	+				+0.6
4,072,380	+				+1.2
4,072,387	+				-0.8
4,072,420	+		DZA65_RS18860	0.13	-0.6
4,072,420	+		DZA65_RS18860	0.13	-0.4
4,072,420	+		DZA65_RS18860	0.13	+0.2
4,072,420	+		DZA65_RS18860	0.13	-0.9
4,072,421	-		DZA65_RS18860	0.13	+0.6
4,072,421	-		DZA65_RS18860	0.13	+0.9
4,072,421	-		DZA65_RS18860	0.13	+0.2
4,072,421	-		DZA65_RS18860	0.13	+1.2
4,072,421	-		DZA65_RS18860	0.13	+0.9
4,072,421	-		DZA65_RS18860	0.13	-2.6
4,072,421	-		DZA65_RS18860	0.13	-2.4
4,072,426	+		DZA65_RS18860	0.14	+0.1
4,072,426	+		DZA65_RS18860	0.14	+0.2
4,072,426	+		DZA65_RS18860	0.14	+1.1
4,072,426	+		DZA65_RS18860	0.14	-1.9
4,072,426	+		DZA65_RS18860	0.14	-0.5
4,072,426	+		DZA65_RS18860	0.14	+1.4
4,072,426	+		DZA65_RS18860	0.14	-0.8
4,072,426	+		DZA65_RS18860	0.14	+1.4
4,072,426	+		DZA65_RS18860	0.14	-0.9
4,072,426	+		DZA65_RS18860	0.14	+0.6
4,072,426	+		DZA65_RS18860	0.14	-0.7
4,072,426	+		DZA65_RS18860	0.14	-0.9
4,072,426	+		DZA65_RS18860	0.14	+0.2
4,072,426	+		DZA65_RS18860	0.14	+0.2
4,072,426	+		DZA65_RS18860	0.14	+0.5
4,072,426	+		DZA65_RS18860	0.14	+0.8
4,072,426	+		DZA65_RS18860	0.14	-0.7
4,072,426	+		DZA65_RS18860	0.14	+0.5
4,072,427	-		DZA65_RS18860	0.14	-2.3
4,072,427	-		DZA65_RS18860	0.14	-0.0
4,072,427	-		DZA65_RS18860	0.14	+0.4
4,072,427	-		DZA65_RS18860	0.14	-0.8
4,072,427	-		DZA65_RS18860	0.14	+0.4
4,072,427	-		DZA65_RS18860	0.14	+0.8
4,072,427	-		DZA65_RS18860	0.14	-0.7
4,072,427	-		DZA65_RS18860	0.14	+0.0
4,072,427	-		DZA65_RS18860	0.14	+1.0
4,072,427	-		DZA65_RS18860	0.14	+0.6
4,072,436	+		DZA65_RS18860	0.15	-1.6
4,072,436	+		DZA65_RS18860	0.15	-2.4
4,072,436	+		DZA65_RS18860	0.15	+0.3
4,072,436	+		DZA65_RS18860	0.15	+0.6
4,072,437	-		DZA65_RS18860	0.15	+0.2
4,072,571	-		DZA65_RS18860	0.28	-1.6
4,072,615	+		DZA65_RS18860	0.33	-0.1
4,072,615	+		DZA65_RS18860	0.33	-0.1
4,072,615	+		DZA65_RS18860	0.33	-1.5
4,072,615	+		DZA65_RS18860	0.33	+0.4
4,072,616	-		DZA65_RS18860	0.33	-1.4
4,072,616	-		DZA65_RS18860	0.33	+0.2
4,072,616	-		DZA65_RS18860	0.33	-1.8
4,072,616	-		DZA65_RS18860	0.33	-0.1
4,072,619	+		DZA65_RS18860	0.33	-0.8
4,072,619	+		DZA65_RS18860	0.33	-0.1
4,072,662	-		DZA65_RS18860	0.37	+0.4
4,072,662	-		DZA65_RS18860	0.37	-1.3
4,072,662	-		DZA65_RS18860	0.37	-0.0
4,072,663	+		DZA65_RS18860	0.38	-0.4
4,072,663	+		DZA65_RS18860	0.38	-0.8
4,072,663	+		DZA65_RS18860	0.38	-0.3
4,072,663	+		DZA65_RS18860	0.38	+0.0
4,072,664	-		DZA65_RS18860	0.38	+0.7
4,072,664	-		DZA65_RS18860	0.38	+0.2
4,072,925	+		DZA65_RS18860	0.64	-0.5
4,072,925	+		DZA65_RS18860	0.64	+0.8
4,072,925	+		DZA65_RS18860	0.64	+2.4
4,072,926	-		DZA65_RS18860	0.64	-1.6
4,072,926	-		DZA65_RS18860	0.64	-0.0
4,072,938	-		DZA65_RS18860	0.65	-2.4
4,072,964	-		DZA65_RS18860	0.68	+0.9
4,072,964	-		DZA65_RS18860	0.68	+0.4
4,073,011	+		DZA65_RS18860	0.72	-0.4
4,073,011	+		DZA65_RS18860	0.72	-1.4
4,073,012	-		DZA65_RS18860	0.72	-1.4
4,073,012	-		DZA65_RS18860	0.72	-1.2
4,073,012	-		DZA65_RS18860	0.72	+0.4
4,073,057	-		DZA65_RS18860	0.77	-0.8
4,073,057	-		DZA65_RS18860	0.77	+1.1
4,073,101	+		DZA65_RS18860	0.81	-0.5
4,073,101	+		DZA65_RS18860	0.81	+1.2
4,073,102	-		DZA65_RS18860	0.81	+0.6
4,073,102	-		DZA65_RS18860	0.81	-0.8
4,073,126	+		DZA65_RS18860	0.84	+0.4
4,073,181	+		DZA65_RS18860	0.89	-2.0
4,073,181	+		DZA65_RS18860	0.89	+0.1
4,073,181	+		DZA65_RS18860	0.89	+1.1
4,073,181	+		DZA65_RS18860	0.89	+1.0
4,073,182	-		DZA65_RS18860	0.89	-0.9
4,073,182	-		DZA65_RS18860	0.89	+1.1
4,073,182	-		DZA65_RS18860	0.89	-0.6
4,073,244	-				+0.5
4,073,244	-				+0.2