Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18775

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,048,464	+		DZA65_RS18770	0.41	-0.6
4,048,465	-		DZA65_RS18770	0.41	+0.5
4,048,465	-		DZA65_RS18770	0.41	-0.9
4,048,465	-		DZA65_RS18770	0.41	+0.2
4,048,465	-		DZA65_RS18770	0.41	-0.9
4,048,465	-		DZA65_RS18770	0.41	+1.2
4,048,473	+		DZA65_RS18770	0.42	+0.1
4,048,485	+		DZA65_RS18770	0.42	+0.1
4,048,486	-		DZA65_RS18770	0.43	+0.6
4,048,489	-		DZA65_RS18770	0.43	+0.6
4,048,541	+		DZA65_RS18770	0.46	-2.2
4,048,541	+		DZA65_RS18770	0.46	+0.1
4,048,542	-		DZA65_RS18770	0.46	-1.2
4,048,764	+		DZA65_RS18770	0.60	-0.6
4,048,764	+		DZA65_RS18770	0.60	-0.8
4,048,765	-		DZA65_RS18770	0.60	+0.4
4,048,836	+		DZA65_RS18770	0.65	-0.4
4,048,836	+		DZA65_RS18770	0.65	+0.1
4,048,836	+		DZA65_RS18770	0.65	+0.6
4,048,836	+		DZA65_RS18770	0.65	+1.4
4,048,836	+		DZA65_RS18770	0.65	-1.2
4,048,836	+		DZA65_RS18770	0.65	+0.1
4,048,836	+		DZA65_RS18770	0.65	-0.5
4,048,836	+		DZA65_RS18770	0.65	+0.0
4,048,836	+		DZA65_RS18770	0.65	+0.6
4,048,837	-		DZA65_RS18770	0.65	+0.1
4,048,837	-		DZA65_RS18770	0.65	-1.2
4,048,837	-		DZA65_RS18770	0.65	-1.2
4,048,837	-		DZA65_RS18770	0.65	+1.3
4,048,837	-		DZA65_RS18770	0.65	+0.1
4,048,837	-		DZA65_RS18770	0.65	-1.9
4,048,901	+		DZA65_RS18770	0.69	+0.4
4,048,902	-		DZA65_RS18770	0.69	+0.2
4,049,039	+		DZA65_RS18770	0.78	+1.0
4,049,055	+		DZA65_RS18770	0.79	-1.9
4,049,056	-		DZA65_RS18770	0.79	-2.2
4,049,118	+		DZA65_RS18770	0.83	-1.4
4,049,118	+		DZA65_RS18770	0.83	+0.7
4,049,118	+		DZA65_RS18770	0.83	-0.5
4,049,118	+		DZA65_RS18770	0.83	+1.7
4,049,118	+		DZA65_RS18770	0.83	+0.6
4,049,118	+		DZA65_RS18770	0.83	+0.1
4,049,118	+		DZA65_RS18770	0.83	-0.5
4,049,119	-		DZA65_RS18770	0.83	-0.3
4,049,119	-		DZA65_RS18770	0.83	+0.1
4,049,119	-		DZA65_RS18770	0.83	+1.8
4,049,144	+		DZA65_RS18770	0.85	-0.6
4,049,145	-		DZA65_RS18770	0.85	+0.7
4,049,145	-		DZA65_RS18770	0.85	+0.0
4,049,236	-				-0.0
4,049,296	+				+1.0
4,049,296	+				-1.9
4,049,297	-				-1.4
4,049,297	-				-1.3
4,049,398	+				+1.2
4,049,399	-				-1.8
4,049,399	-				+0.0
4,049,399	-				+0.3
4,049,405	+				+0.1
4,049,406	-				+0.2
4,049,602	+		DZA65_RS18775	0.37	+2.0
4,049,688	+		DZA65_RS18775	0.55	-0.2
4,049,689	-		DZA65_RS18775	0.55	-0.5
4,049,689	-		DZA65_RS18775	0.55	-1.6
4,049,707	+		DZA65_RS18775	0.59	-0.6
4,049,899	-				-0.2
4,049,913	+				+0.8
4,049,913	+				+0.1
4,049,913	+				-0.4
4,049,913	+				+0.4
4,049,913	+				+0.0
4,049,913	+				+0.4
4,049,913	+				+1.4
4,049,914	-				-0.6
4,049,914	-				-0.0
4,049,914	-				-1.0
4,049,914	-				-0.2
4,049,914	-				-1.4
4,049,914	-				+0.4
4,049,914	-				-0.2
4,049,914	-				+0.8
4,049,914	-				-0.3
4,049,915	+				-0.4
4,049,915	+				-0.8
4,049,915	+				-0.1
4,049,915	+				+1.9
4,049,915	+				+1.1
4,049,915	+				-1.2
4,049,915	+				+0.4
4,049,915	+				+0.4
4,049,916	-				+1.3
4,049,916	-				+0.2
4,049,916	-				+0.8
4,049,916	-				-2.2
4,049,916	-				+0.5
4,049,916	-				-0.2
4,049,917	+				+0.4
4,049,918	-				-0.2
4,049,925	+				-0.6
4,050,024	+		DZA65_RS18780	0.11	-0.0
4,050,128	+		DZA65_RS18780	0.33	+0.7
4,050,138	+		DZA65_RS18780	0.35	+0.1
4,050,138	+		DZA65_RS18780	0.35	+0.2
4,050,138	+		DZA65_RS18780	0.35	-0.1
4,050,138	+		DZA65_RS18780	0.35	-0.7
4,050,138	+		DZA65_RS18780	0.35	-0.4
4,050,138	+		DZA65_RS18780	0.35	+0.6
4,050,139	-		DZA65_RS18780	0.36	-0.5
4,050,139	-		DZA65_RS18780	0.36	+0.3
4,050,139	-		DZA65_RS18780	0.36	-1.8
4,050,139	-		DZA65_RS18780	0.36	-0.0
4,050,139	-		DZA65_RS18780	0.36	+1.0
4,050,139	-		DZA65_RS18780	0.36	+0.7
4,050,141	+		DZA65_RS18780	0.36	+0.2
4,050,141	+		DZA65_RS18780	0.36	-0.9
4,050,141	+		DZA65_RS18780	0.36	+0.5
4,050,142	-		DZA65_RS18780	0.36	+0.9
4,050,142	-		DZA65_RS18780	0.36	+0.6
4,050,142	-		DZA65_RS18780	0.36	+0.1
4,050,274	+		DZA65_RS18780	0.65	-3.1
4,050,274	+		DZA65_RS18780	0.65	-0.7
4,050,274	+		DZA65_RS18780	0.65	-2.8
4,050,274	+		DZA65_RS18780	0.65	-0.1
4,050,275	-		DZA65_RS18780	0.65	-0.6
4,050,327	+		DZA65_RS18780	0.76	+0.8
4,050,327	+		DZA65_RS18780	0.76	+0.0
4,050,327	+		DZA65_RS18780	0.76	-0.0
4,050,327	+		DZA65_RS18780	0.76	-0.1
4,050,327	+		DZA65_RS18780	0.76	+0.4
4,050,328	-		DZA65_RS18780	0.76	-1.0
4,050,328	-		DZA65_RS18780	0.76	+0.5
4,050,328	-		DZA65_RS18780	0.76	-1.6
4,050,328	-		DZA65_RS18780	0.76	+1.8
4,050,328	-		DZA65_RS18780	0.76	+0.9
4,050,328	-		DZA65_RS18780	0.76	-0.5
4,050,336	+		DZA65_RS18780	0.78	-1.4
4,050,436	-				-2.2
4,050,465	+				-0.6
4,050,465	+				-0.4
4,050,465	+				+0.2
4,050,465	+				-0.9
4,050,465	+				+0.1
4,050,465	+				+0.4
4,050,465	+				+1.4
4,050,465	+				-0.2
4,050,465	+				-0.9
4,050,465	+				+0.1
4,050,465	+				+0.1
4,050,465	+				+0.8
4,050,465	+				-0.6
4,050,465	+				-3.4
4,050,465	+				+0.6
4,050,465	+				+0.4
4,050,465	+				+1.4
4,050,466	-				-0.9
4,050,466	-				+0.4
4,050,466	-				+0.8
4,050,466	-				-0.2
4,050,466	-				-1.6
4,050,466	-				+1.4
4,050,466	-				-0.4
4,050,466	-				-0.4
4,050,466	-				+0.5
4,050,471	+				-0.3
4,050,471	+				+0.6
4,050,472	-				-0.8
4,050,472	-				+1.1
4,050,472	-				+0.1
4,050,472	-				+0.1
4,050,472	-				+0.2
4,050,472	-				-0.1
4,050,488	+		DZA65_RS18785	0.16	-0.1
4,050,488	+		DZA65_RS18785	0.16	+2.7
4,050,489	-		DZA65_RS18785	0.17	-0.5
4,050,489	-				-0.6
4,050,749	+		DZA65_RS18790	0.14	-0.8
4,050,749	+		DZA65_RS18790	0.14	+0.1
4,050,750	-		DZA65_RS18790	0.15	+0.8
4,050,750	-		DZA65_RS18790	0.15	+0.4
4,050,818	+		DZA65_RS18790	0.25	-1.9
4,050,818	+		DZA65_RS18790	0.25	-0.6
4,050,819	-		DZA65_RS18790	0.25	+0.2
4,050,819	-		DZA65_RS18790	0.25	-0.4
4,050,819	-		DZA65_RS18790	0.25	+2.0
4,050,819	-		DZA65_RS18790	0.25	-1.2
4,050,819	-		DZA65_RS18790	0.25	+0.1
4,050,819	-		DZA65_RS18790	0.25	-1.2