Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18335

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,954,875	+		DZA65_RS18330	0.56	+1.5
3,954,875	+		DZA65_RS18330	0.56	-0.0
3,954,875	+		DZA65_RS18330	0.56	-1.6
3,954,875	+		DZA65_RS18330	0.56	-0.8
3,954,875	+		DZA65_RS18330	0.56	+0.7
3,954,875	+		DZA65_RS18330	0.56	-1.6
3,954,875	+		DZA65_RS18330	0.56	+1.4
3,954,875	+		DZA65_RS18330	0.56	+0.6
3,954,875	+		DZA65_RS18330	0.56	-0.2
3,954,875	+		DZA65_RS18330	0.56	+1.4
3,954,875	+		DZA65_RS18330	0.56	+0.2
3,954,875	+		DZA65_RS18330	0.56	-0.1
3,954,875	+		DZA65_RS18330	0.56	+0.1
3,954,875	+		DZA65_RS18330	0.56	+0.3
3,954,875	+		DZA65_RS18330	0.56	+0.4
3,954,875	+		DZA65_RS18330	0.56	-0.4
3,954,875	+		DZA65_RS18330	0.56	+0.5
3,954,875	+		DZA65_RS18330	0.56	-0.1
3,954,875	+		DZA65_RS18330	0.56	+0.1
3,954,875	+		DZA65_RS18330	0.56	-0.4
3,954,875	+		DZA65_RS18330	0.56	+0.1
3,954,875	+		DZA65_RS18330	0.56	+0.8
3,954,875	+		DZA65_RS18330	0.56	-0.2
3,954,875	+		DZA65_RS18330	0.56	-0.6
3,954,876	-		DZA65_RS18330	0.56	+0.4
3,954,876	-		DZA65_RS18330	0.56	-0.4
3,954,876	-		DZA65_RS18330	0.56	-3.4
3,954,876	-		DZA65_RS18330	0.56	+1.0
3,954,876	-		DZA65_RS18330	0.56	-0.3
3,954,876	-		DZA65_RS18330	0.56	+0.8
3,954,876	-		DZA65_RS18330	0.56	+0.7
3,954,876	-		DZA65_RS18330	0.56	-0.9
3,954,876	-		DZA65_RS18330	0.56	-0.9
3,954,876	-		DZA65_RS18330	0.56	-0.4
3,954,876	-		DZA65_RS18330	0.56	+0.2
3,954,876	-		DZA65_RS18330	0.56	-2.0
3,954,876	-		DZA65_RS18330	0.56	-0.3
3,954,876	-		DZA65_RS18330	0.56	+0.5
3,954,876	-		DZA65_RS18330	0.56	+0.5
3,954,876	-		DZA65_RS18330	0.56	-0.4
3,954,876	-		DZA65_RS18330	0.56	-0.1
3,954,876	-		DZA65_RS18330	0.56	-2.2
3,954,881	+		DZA65_RS18330	0.56	-0.6
3,954,881	+		DZA65_RS18330	0.56	+0.4
3,954,882	-		DZA65_RS18330	0.56	-0.5
3,954,882	-		DZA65_RS18330	0.56	-1.1
3,954,918	+		DZA65_RS18330	0.58	-0.2
3,954,919	-		DZA65_RS18330	0.58	-0.6
3,954,919	-		DZA65_RS18330	0.58	-1.2
3,954,941	+		DZA65_RS18330	0.59	+0.9
3,954,941	+		DZA65_RS18330	0.59	-1.2
3,954,941	+		DZA65_RS18330	0.59	-1.4
3,954,941	+		DZA65_RS18330	0.59	+1.0
3,954,941	+		DZA65_RS18330	0.59	+0.1
3,954,941	+		DZA65_RS18330	0.59	+0.4
3,954,942	-		DZA65_RS18330	0.60	-1.6
3,954,942	-		DZA65_RS18330	0.60	+1.2
3,954,942	-		DZA65_RS18330	0.60	+0.5
3,954,942	-		DZA65_RS18330	0.60	+0.0
3,954,942	-		DZA65_RS18330	0.60	-0.6
3,954,942	-		DZA65_RS18330	0.60	-0.6
3,954,942	-		DZA65_RS18330	0.60	+0.4
3,954,942	-		DZA65_RS18330	0.60	-0.6
3,954,942	-		DZA65_RS18330	0.60	+1.9
3,954,942	-		DZA65_RS18330	0.60	+0.4
3,955,046	+		DZA65_RS18330	0.65	-1.2
3,955,046	+		DZA65_RS18330	0.65	+0.4
3,955,046	+		DZA65_RS18330	0.65	+1.5
3,955,047	-		DZA65_RS18330	0.65	-0.4
3,955,047	-		DZA65_RS18330	0.65	-2.2
3,955,047	-		DZA65_RS18330	0.65	+0.6
3,955,097	+		DZA65_RS18330	0.67	-0.4
3,955,097	+		DZA65_RS18330	0.67	-1.0
3,955,097	+		DZA65_RS18330	0.67	+0.2
3,955,097	+		DZA65_RS18330	0.67	-0.6
3,955,097	+		DZA65_RS18330	0.67	+0.9
3,955,097	+		DZA65_RS18330	0.67	-2.2
3,955,098	-		DZA65_RS18330	0.68	-0.5
3,955,098	-		DZA65_RS18330	0.68	+0.5
3,955,098	-		DZA65_RS18330	0.68	-0.4
3,955,098	-		DZA65_RS18330	0.68	-0.6
3,955,098	-		DZA65_RS18330	0.68	+0.6
3,955,132	+		DZA65_RS18330	0.69	+0.2
3,955,132	+		DZA65_RS18330	0.69	-2.4
3,955,133	-		DZA65_RS18330	0.69	+0.6
3,955,198	+		DZA65_RS18330	0.73	-1.2
3,955,198	+		DZA65_RS18330	0.73	+0.6
3,955,244	+		DZA65_RS18330	0.75	-0.1
3,955,244	+		DZA65_RS18330	0.75	-0.4
3,955,245	-		DZA65_RS18330	0.75	-0.0
3,955,245	-		DZA65_RS18330	0.75	-0.9
3,955,245	-		DZA65_RS18330	0.75	+0.9
3,955,245	-		DZA65_RS18330	0.75	-1.4
3,955,245	-		DZA65_RS18330	0.75	-1.0
3,955,246	+		DZA65_RS18330	0.75	+0.6
3,955,246	+		DZA65_RS18330	0.75	+0.1
3,955,246	+		DZA65_RS18330	0.75	-1.6
3,955,247	-		DZA65_RS18330	0.75	+0.9
3,955,274	+		DZA65_RS18330	0.77	-0.4
3,955,274	+		DZA65_RS18330	0.77	+0.8
3,955,282	-		DZA65_RS18330	0.77	-1.0
3,955,282	-		DZA65_RS18330	0.77	-1.6
3,955,282	-		DZA65_RS18330	0.77	-1.2
3,955,376	-		DZA65_RS18330	0.82	+0.2
3,955,376	-		DZA65_RS18330	0.82	-1.1
3,955,416	-		DZA65_RS18330	0.84	+0.8
3,955,505	+		DZA65_RS18330	0.88	-1.6
3,955,505	+		DZA65_RS18330	0.88	-0.1
3,955,505	+		DZA65_RS18330	0.88	-0.5
3,955,506	-		DZA65_RS18330	0.88	+2.4
3,955,506	-		DZA65_RS18330	0.88	+2.4
3,955,506	-		DZA65_RS18330	0.88	-0.2
3,955,706	+				+0.4
3,955,706	+				+1.1
3,955,706	+				-0.8
3,955,727	+				+1.4
3,955,727	+				-0.1
3,955,728	-				-0.3
3,955,728	-				+0.1
3,955,784	+				+0.7
3,955,801	-				-0.2
3,955,804	+				+0.8
3,955,805	-				+0.2
3,955,805	-				-1.2
3,955,805	-				+0.2
3,955,805	-				-0.6
3,955,805	-				+1.4
3,955,805	-				-0.0
3,956,093	+		DZA65_RS18335	0.34	+1.2
3,956,094	-		DZA65_RS18335	0.34	-0.6
3,956,179	+		DZA65_RS18335	0.47	+0.4
3,956,179	+		DZA65_RS18335	0.47	-0.1
3,956,179	+		DZA65_RS18335	0.47	-1.0
3,956,179	-		DZA65_RS18335	0.47	+0.4
3,956,180	-		DZA65_RS18335	0.47	+1.0
3,956,180	-		DZA65_RS18335	0.47	+0.8
3,956,180	-		DZA65_RS18335	0.47	+0.4
3,956,180	-		DZA65_RS18335	0.47	+0.6
3,956,400	-		DZA65_RS18335	0.80	+0.8
3,956,439	+		DZA65_RS18335	0.86	+0.4
3,956,439	+		DZA65_RS18335	0.86	+0.4
3,956,439	+		DZA65_RS18335	0.86	-0.5
3,956,439	+		DZA65_RS18335	0.86	+1.1
3,956,439	+		DZA65_RS18335	0.86	-1.4
3,956,440	-		DZA65_RS18335	0.86	-0.6
3,956,440	-		DZA65_RS18335	0.86	+2.7
3,956,440	-		DZA65_RS18335	0.86	+0.8
3,956,440	-		DZA65_RS18335	0.86	-1.6
3,956,503	+				+0.9
3,956,504	-				-0.1
3,956,529	+				-1.3
3,956,551	-				+0.2
3,956,551	-				-0.0
3,956,569	-				+0.7
3,956,582	+				-0.2
3,956,601	+				+0.2
3,956,620	-				+0.7
3,956,620	-				-0.8
3,956,630	-				-0.0
3,956,646	-				-0.1
3,956,646	-				+0.8
3,956,729	+		DZA65_RS18340	0.23	+1.1
3,956,730	-		DZA65_RS18340	0.23	-1.4
3,956,730	-		DZA65_RS18340	0.23	-2.3
3,956,749	+		DZA65_RS18340	0.28	-1.0
3,956,749	+		DZA65_RS18340	0.28	+0.4
3,956,749	+		DZA65_RS18340	0.28	+0.6
3,956,749	+		DZA65_RS18340	0.28	+0.4
3,956,749	+		DZA65_RS18340	0.28	-0.1
3,956,750	-		DZA65_RS18340	0.28	-0.1
3,956,750	-		DZA65_RS18340	0.28	+0.5
3,956,750	-		DZA65_RS18340	0.28	+0.1
3,956,750	-		DZA65_RS18340	0.28	+0.6
3,956,786	+		DZA65_RS18340	0.38	-1.1
3,956,786	+		DZA65_RS18340	0.38	-1.2
3,956,786	+		DZA65_RS18340	0.38	-2.4
3,956,787	-		DZA65_RS18340	0.38	+0.1
3,956,787	-		DZA65_RS18340	0.38	-0.5
3,956,787	-		DZA65_RS18340	0.38	-0.2
3,956,787	-		DZA65_RS18340	0.38	+0.4
3,956,787	-		DZA65_RS18340	0.38	+0.9
3,956,787	-		DZA65_RS18340	0.38	-0.3
3,956,792	+		DZA65_RS18340	0.40	+0.6
3,956,792	+		DZA65_RS18340	0.40	+0.6
3,956,792	+		DZA65_RS18340	0.40	-2.0
3,956,792	+		DZA65_RS18340	0.40	+1.0
3,956,793	-		DZA65_RS18340	0.40	-1.0
3,956,795	+		DZA65_RS18340	0.41	+0.6
3,956,796	-		DZA65_RS18340	0.41	+0.2
3,956,796	-		DZA65_RS18340	0.41	-0.4
3,956,796	-		DZA65_RS18340	0.41	-0.1
3,956,802	-		DZA65_RS18340	0.42	+0.8
3,956,802	-		DZA65_RS18340	0.42	-0.4
3,956,802	-		DZA65_RS18340	0.42	-0.4
3,956,804	+		DZA65_RS18340	0.43	-0.2
3,956,805	-		DZA65_RS18340	0.43	+1.6
3,956,876	+		DZA65_RS18340	0.62	-0.3
3,956,876	+		DZA65_RS18340	0.62	+0.7
3,956,876	+		DZA65_RS18340	0.62	-0.1
3,956,877	-		DZA65_RS18340	0.63	+0.9
3,956,877	-		DZA65_RS18340	0.63	-0.4
3,956,877	-		DZA65_RS18340	0.63	+0.9
3,956,879	+		DZA65_RS18340	0.63	+0.1
3,956,879	+		DZA65_RS18340	0.63	+0.5
3,956,879	+		DZA65_RS18340	0.63	-3.0
3,956,912	+		DZA65_RS18340	0.72	+0.9
3,956,912	+		DZA65_RS18340	0.72	+1.7
3,956,912	+		DZA65_RS18340	0.72	-1.4
3,956,912	+		DZA65_RS18340	0.72	+1.9
3,956,913	-		DZA65_RS18340	0.72	+1.6
3,956,913	-		DZA65_RS18340	0.72	+0.3
3,956,913	-		DZA65_RS18340	0.72	+0.9
3,956,913	-		DZA65_RS18340	0.72	-0.6
3,956,913	-		DZA65_RS18340	0.72	-0.5
3,956,974	+		DZA65_RS18340	0.89	-0.9
3,956,974	+		DZA65_RS18340	0.89	-1.0
3,956,974	+		DZA65_RS18340	0.89	+0.5
3,956,974	+		DZA65_RS18340	0.89	+0.3
3,956,974	+		DZA65_RS18340	0.89	+0.1
3,956,974	+		DZA65_RS18340	0.89	+0.6
3,956,974	+		DZA65_RS18340	0.89	-1.5
3,956,974	+		DZA65_RS18340	0.89	+1.3
3,956,974	+		DZA65_RS18340	0.89	-0.8
3,956,974	+		DZA65_RS18340	0.89	+0.1
3,956,975	-		DZA65_RS18340	0.89	-0.2
3,956,975	-		DZA65_RS18340	0.89	-0.3
3,956,975	-		DZA65_RS18340	0.89	-1.1
3,956,975	-		DZA65_RS18340	0.89	-0.4
3,956,975	-		DZA65_RS18340	0.89	+0.7
3,956,975	-		DZA65_RS18340	0.89	+0.5
3,956,975	-		DZA65_RS18340	0.89	-2.2
3,956,975	-		DZA65_RS18340	0.89	+0.7
3,956,975	-		DZA65_RS18340	0.89	-1.0
3,956,985	+				+1.0
3,956,985	+				+0.4
3,956,985	+				-0.3
3,956,985	+				+0.8
3,956,986	-				+1.2
3,956,999	-				+1.1
3,957,009	+				+2.6
3,957,009	+				+0.7
3,957,009	+				-0.9
3,957,009	+				+1.2
3,957,009	+				-0.1
3,957,022	-				-1.6
3,957,059	+				-0.9
3,957,059	+				-0.6
3,957,059	+				+0.1
3,957,059	+				+1.4
3,957,059	+				-1.1
3,957,059	+				+0.8
3,957,059	+				+0.4
3,957,059	+				+0.9
3,957,060	-				+0.2
3,957,060	-				-2.0
3,957,060	-				+2.7
3,957,060	-				-0.8
3,957,060	-				-1.4
3,957,061	+				+0.2
3,957,061	+				-1.0
3,957,061	+				+1.1
3,957,062	-				-0.4
3,957,062	-				-0.4
3,957,062	-				+0.4
3,957,062	-				-1.5
3,957,062	-				-3.0
3,957,103	-				-0.6
3,957,105	+				+0.4
3,957,106	-				+0.8
3,957,106	-				+0.4
3,957,108	+				+0.4
3,957,109	-				+0.5
3,957,109	-				-0.6
3,957,157	+				+0.8
3,957,158	-				-0.8
3,957,248	+				+0.4
3,957,249	-				+0.1
3,957,265	+				+0.2
3,957,266	-				+0.6
3,957,266	-				-0.5
3,957,266	-				+0.3
3,957,348	+		DZA65_RS18345	0.14	+0.4
3,957,349	-		DZA65_RS18345	0.14	-0.7
3,957,349	-		DZA65_RS18345	0.14	+0.5
3,957,362	+		DZA65_RS18345	0.16	-2.2
3,957,362	+		DZA65_RS18345	0.16	-1.4
3,957,362	+		DZA65_RS18345	0.16	-0.9
3,957,363	-		DZA65_RS18345	0.16	-0.4
3,957,363	-		DZA65_RS18345	0.16	+1.5
3,957,363	-		DZA65_RS18345	0.16	+0.4
3,957,364	+		DZA65_RS18345	0.16	-2.4
3,957,364	+		DZA65_RS18345	0.16	-0.6
3,957,364	+		DZA65_RS18345	0.16	-0.6
3,957,364	+		DZA65_RS18345	0.16	-0.9
3,957,364	+		DZA65_RS18345	0.16	+1.7
3,957,364	+		DZA65_RS18345	0.16	-1.6
3,957,364	+		DZA65_RS18345	0.16	-0.5
3,957,364	+		DZA65_RS18345	0.16	+0.4
3,957,364	+		DZA65_RS18345	0.16	+0.9
3,957,364	+		DZA65_RS18345	0.16	+1.0
3,957,364	+		DZA65_RS18345	0.16	-0.2
3,957,365	-		DZA65_RS18345	0.16	+1.4
3,957,365	-		DZA65_RS18345	0.16	+1.6
3,957,365	-		DZA65_RS18345	0.16	-0.4
3,957,365	-		DZA65_RS18345	0.16	+0.4
3,957,365	-		DZA65_RS18345	0.16	+0.0
3,957,365	-		DZA65_RS18345	0.16	+0.5
3,957,505	+		DZA65_RS18345	0.39	+0.8
3,957,505	+		DZA65_RS18345	0.39	-1.2
3,957,506	-		DZA65_RS18345	0.39	+2.4