Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18290

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,943,047	+				+0.2
3,943,047	+				-0.5
3,943,048	-				-0.2
3,943,048	-				-1.0
3,943,048	-				+0.4
3,943,048	-				+0.4
3,943,048	-				-1.1
3,943,048	-				-1.1
3,943,054	-				-0.4
3,943,054	-				-1.6
3,943,194	+		DZA65_RS18285	0.20	-1.6
3,943,195	-		DZA65_RS18285	0.20	+0.4
3,943,200	+		DZA65_RS18285	0.22	-0.7
3,943,200	+		DZA65_RS18285	0.22	-1.0
3,943,200	+		DZA65_RS18285	0.22	-0.1
3,943,200	+		DZA65_RS18285	0.22	+0.7
3,943,231	+		DZA65_RS18285	0.31	+0.6
3,943,288	+		DZA65_RS18285	0.47	-0.3
3,943,289	-		DZA65_RS18285	0.47	-0.2
3,943,305	+		DZA65_RS18285	0.52	-0.9
3,943,306	-		DZA65_RS18285	0.52	+0.4
3,943,317	+		DZA65_RS18285	0.55	-0.6
3,943,365	+		DZA65_RS18285	0.69	-0.6
3,943,365	+		DZA65_RS18285	0.69	-1.0
3,943,366	-		DZA65_RS18285	0.70	+1.4
3,943,366	-		DZA65_RS18285	0.70	+0.8
3,943,367	+		DZA65_RS18285	0.70	-0.1
3,943,367	+		DZA65_RS18285	0.70	+0.1
3,943,367	+		DZA65_RS18285	0.70	+0.9
3,943,367	+		DZA65_RS18285	0.70	-0.6
3,943,368	-		DZA65_RS18285	0.70	+0.5
3,943,368	-		DZA65_RS18285	0.70	-1.2
3,943,375	-		DZA65_RS18285	0.72	-0.6
3,943,462	+				-0.5
3,943,463	-				-1.4
3,943,463	-				-2.0
3,943,476	-				-1.8
3,943,490	+				-1.8
3,943,490	+				-0.2
3,943,491	-				-0.2
3,943,491	-				-0.0
3,943,491	-				+0.9
3,943,491	-				-1.2
3,943,491	-				-0.7
3,943,536	-				-0.2
3,943,536	-				-1.6
3,943,536	-				-3.1
3,943,536	-				+0.2
3,943,537	+				-1.7
3,943,537	+				-1.6
3,943,557	-				-0.2
3,943,561	+				-1.4
3,943,561	+				-0.1
3,943,561	+				-0.8
3,943,561	+				+0.0
3,943,562	-				+0.0
3,943,601	+				+1.1
3,943,601	+				+0.4
3,943,601	+				+0.6
3,943,601	+				+1.6
3,943,601	+				+1.6
3,943,601	+				-1.6
3,943,602	-				-0.8
3,943,602	-				+0.1
3,943,602	-				-1.2
3,943,602	-				-0.1
3,943,602	-				-0.9
3,943,602	-				-1.2
3,943,602	-				-0.6
3,943,602	-				+0.9
3,943,629	-				+0.3
3,943,672	-				-0.4
3,943,681	+				+1.4
3,943,681	+				-0.4
3,943,681	+				+1.2
3,943,681	+				+0.9
3,943,681	+				+0.8
3,943,682	-				+0.1
3,943,690	+				-1.3
3,943,691	-				-0.5
3,943,777	-				-0.9
3,943,777	-				+1.4
3,943,817	+				-0.4
3,943,817	+				+0.1
3,943,817	+				-0.8
3,943,818	-				+0.5
3,943,818	-				+1.2
3,944,008	+		DZA65_RS18290	0.14	+0.5
3,944,008	+		DZA65_RS18290	0.14	+0.3
3,944,008	+		DZA65_RS18290	0.14	-0.3
3,944,009	-		DZA65_RS18290	0.14	-0.3
3,944,009	-		DZA65_RS18290	0.14	+0.5
3,944,009	-		DZA65_RS18290	0.14	-0.5
3,944,009	-		DZA65_RS18290	0.14	+0.7
3,944,009	-		DZA65_RS18290	0.14	-3.1
3,944,009	-		DZA65_RS18290	0.14	-1.4
3,944,009	-		DZA65_RS18290	0.14	-2.4
3,944,021	+		DZA65_RS18290	0.14	-0.5
3,944,022	-		DZA65_RS18290	0.15	-0.3
3,944,022	-		DZA65_RS18290	0.15	-1.1
3,944,022	-		DZA65_RS18290	0.15	-1.2
3,944,022	-		DZA65_RS18290	0.15	-0.8
3,944,095	+		DZA65_RS18290	0.16	+0.1
3,944,095	+		DZA65_RS18290	0.16	+0.3
3,944,095	+		DZA65_RS18290	0.16	-0.4
3,944,095	+		DZA65_RS18290	0.16	+0.9
3,944,095	+		DZA65_RS18290	0.16	-0.0
3,944,095	+		DZA65_RS18290	0.16	-1.2
3,944,096	-		DZA65_RS18290	0.16	-0.8
3,944,127	-		DZA65_RS18290	0.17	+0.4
3,944,127	-		DZA65_RS18290	0.17	-2.4
3,944,298	+		DZA65_RS18290	0.22	-1.8
3,944,299	-		DZA65_RS18290	0.22	-0.2
3,944,469	+		DZA65_RS18290	0.26	-1.4
3,944,470	-		DZA65_RS18290	0.26	-0.3
3,944,470	-		DZA65_RS18290	0.26	-0.2
3,944,470	-		DZA65_RS18290	0.26	-0.6
3,944,552	-		DZA65_RS18290	0.29	-0.7
3,944,645	-		DZA65_RS18290	0.31	+1.6
3,944,722	+		DZA65_RS18290	0.33	-0.5
3,944,722	+		DZA65_RS18290	0.33	-1.4
3,944,973	+		DZA65_RS18290	0.40	+0.9
3,944,974	-		DZA65_RS18290	0.40	-0.3
3,945,024	+		DZA65_RS18290	0.41	-1.4
3,945,049	-		DZA65_RS18290	0.42	-0.1
3,945,106	+		DZA65_RS18290	0.43	+0.8
3,945,176	+		DZA65_RS18290	0.45	-1.2
3,945,176	+		DZA65_RS18290	0.45	+0.6
3,945,176	+		DZA65_RS18290	0.45	-1.0
3,945,177	-		DZA65_RS18290	0.45	+0.4
3,945,177	-		DZA65_RS18290	0.45	+0.1
3,945,177	-		DZA65_RS18290	0.45	-0.2
3,945,427	+		DZA65_RS18290	0.52	+1.1
3,945,427	+		DZA65_RS18290	0.52	+0.0
3,945,427	+		DZA65_RS18290	0.52	-0.2
3,945,427	+		DZA65_RS18290	0.52	+0.3
3,945,427	+		DZA65_RS18290	0.52	-0.2
3,945,428	-		DZA65_RS18290	0.52	-1.1
3,945,428	-		DZA65_RS18290	0.52	+0.4
3,945,428	-		DZA65_RS18290	0.52	-0.6
3,945,428	-				+2.4
3,945,428	-		DZA65_RS18290	0.52	-0.4
3,945,711	+		DZA65_RS18290	0.59	-2.6
3,945,711	+		DZA65_RS18290	0.59	-2.8
3,945,712	-		DZA65_RS18290	0.59	-0.0
3,945,784	+		DZA65_RS18290	0.61	+2.1
3,945,784	+		DZA65_RS18290	0.61	+0.4
3,945,904	-		DZA65_RS18290	0.64	-1.2
3,945,906	+		DZA65_RS18290	0.64	+0.6
3,946,067	-		DZA65_RS18290	0.69	-0.2
3,946,154	+		DZA65_RS18290	0.71	+0.7
3,946,154	+		DZA65_RS18290	0.71	+0.2
3,946,422	-		DZA65_RS18290	0.78	-1.6
3,946,552	+		DZA65_RS18290	0.82	+1.1
3,946,552	+		DZA65_RS18290	0.82	-0.4
3,946,553	-		DZA65_RS18290	0.82	+1.9
3,946,584	+		DZA65_RS18290	0.82	-0.6
3,946,584	+		DZA65_RS18290	0.82	+0.0
3,946,585	-		DZA65_RS18290	0.82	-0.8
3,946,585	-		DZA65_RS18290	0.82	+0.4
3,946,812	+		DZA65_RS18290	0.88	-0.6
3,946,812	+		DZA65_RS18290	0.88	-0.9
3,946,813	-		DZA65_RS18290	0.88	-2.2
3,946,813	-		DZA65_RS18290	0.88	+0.4
3,946,813	-		DZA65_RS18290	0.88	-1.8
3,946,822	-		DZA65_RS18290	0.89	-0.3
3,946,929	+				+0.8
3,947,055	-				+0.4
3,947,104	+				-0.5
3,947,105	-				-0.2
3,947,105	-				-0.0
3,947,247	+				+0.8
3,947,248	-				-0.5
3,947,248	-				-1.9
3,947,269	+				+1.1
3,947,269	+				+0.7
3,947,269	+				-2.0
3,947,269	+				-1.5
3,947,269	+				+0.1
3,947,269	+				-0.6
3,947,270	-				-1.2
3,947,270	-				+0.4
3,947,418	+		DZA65_RS18295	0.10	+0.8
3,947,418	+		DZA65_RS18295	0.10	-0.3
3,947,418	+		DZA65_RS18295	0.10	-2.8
3,947,418	+		DZA65_RS18295	0.10	+0.4
3,947,419	-		DZA65_RS18295	0.10	-0.6
3,947,419	-		DZA65_RS18295	0.10	-1.5
3,947,455	+		DZA65_RS18295	0.12	-0.6
3,947,455	+		DZA65_RS18295	0.12	-0.4
3,947,455	+		DZA65_RS18295	0.12	-0.4
3,947,455	+		DZA65_RS18295	0.12	-0.9
3,947,456	-		DZA65_RS18295	0.12	-1.2
3,947,456	-		DZA65_RS18295	0.12	-0.3
3,947,461	+		DZA65_RS18295	0.13	-0.2
3,947,461	+		DZA65_RS18295	0.13	-0.3
3,947,536	+		DZA65_RS18295	0.17	-2.2
3,947,536	+		DZA65_RS18295	0.17	-2.2
3,947,536	+		DZA65_RS18295	0.17	+0.6
3,947,536	+		DZA65_RS18295	0.17	-0.3
3,947,536	+		DZA65_RS18295	0.17	-0.2
3,947,536	+		DZA65_RS18295	0.17	+0.2
3,947,536	+		DZA65_RS18295	0.17	+1.3
3,947,537	-		DZA65_RS18295	0.17	-0.9
3,947,537	-		DZA65_RS18295	0.17	-1.2
3,947,540	+		DZA65_RS18295	0.17	+1.4
3,947,540	+		DZA65_RS18295	0.17	-0.6
3,947,540	+		DZA65_RS18295	0.17	+0.2
3,947,541	-		DZA65_RS18295	0.17	+1.4
3,947,541	-		DZA65_RS18295	0.17	+1.0
3,947,541	-		DZA65_RS18295	0.17	-1.0
3,947,541	-		DZA65_RS18295	0.17	-1.0
3,947,541	-		DZA65_RS18295	0.17	-0.0
3,947,541	-		DZA65_RS18295	0.17	-0.9
3,947,542	+		DZA65_RS18295	0.17	+0.9
3,947,819	-		DZA65_RS18295	0.33	-1.6
3,947,855	+		DZA65_RS18295	0.35	+0.4
3,947,855	+				-0.6
3,947,855	+		DZA65_RS18295	0.35	-0.1
3,947,856	-		DZA65_RS18295	0.35	+0.2
3,947,877	+		DZA65_RS18295	0.37	+0.5
3,947,877	+		DZA65_RS18295	0.37	+1.3
3,947,877	+		DZA65_RS18295	0.37	+0.4
3,947,877	+		DZA65_RS18295	0.37	-0.3
3,947,877	+		DZA65_RS18295	0.37	-0.2
3,947,877	+		DZA65_RS18295	0.37	-1.5
3,947,877	+		DZA65_RS18295	0.37	+0.7
3,947,878	-		DZA65_RS18295	0.37	+1.1
3,947,878	-		DZA65_RS18295	0.37	-0.8
3,947,878	-		DZA65_RS18295	0.37	-0.2
3,947,878	-		DZA65_RS18295	0.37	+0.1
3,947,878	-		DZA65_RS18295	0.37	+0.0
3,947,878	-		DZA65_RS18295	0.37	-0.3
3,947,878	-		DZA65_RS18295	0.37	-1.4
3,947,878	-		DZA65_RS18295	0.37	-1.6
3,947,995	+		DZA65_RS18295	0.44	-1.2
3,947,995	+		DZA65_RS18295	0.44	-1.2
3,947,995	+		DZA65_RS18295	0.44	+0.9
3,947,995	+		DZA65_RS18295	0.44	-1.1
3,947,995	+		DZA65_RS18295	0.44	+0.4
3,947,995	+		DZA65_RS18295	0.44	-0.3
3,947,995	+		DZA65_RS18295	0.44	-0.9
3,947,995	+				-0.6
3,947,996	-		DZA65_RS18295	0.44	-1.2
3,947,996	-		DZA65_RS18295	0.44	+1.4
3,947,996	-		DZA65_RS18295	0.44	+1.1
3,947,996	-		DZA65_RS18295	0.44	+1.0
3,947,996	-		DZA65_RS18295	0.44	-0.6
3,947,996	-		DZA65_RS18295	0.44	-0.5
3,947,996	-		DZA65_RS18295	0.44	+0.2
3,947,996	-		DZA65_RS18295	0.44	-0.1
3,947,996	-		DZA65_RS18295	0.44	-1.0
3,947,998	+		DZA65_RS18295	0.44	-0.6
3,947,998	+		DZA65_RS18295	0.44	-1.4
3,947,998	+				-0.6
3,947,998	+		DZA65_RS18295	0.44	-1.7
3,947,998	+		DZA65_RS18295	0.44	-0.2
3,947,999	-		DZA65_RS18295	0.44	-0.2
3,947,999	-		DZA65_RS18295	0.44	+0.4
3,947,999	-		DZA65_RS18295	0.44	+0.5
3,947,999	-		DZA65_RS18295	0.44	+0.2
3,948,034	+		DZA65_RS18295	0.46	-0.6
3,948,035	-		DZA65_RS18295	0.46	-1.8
3,948,035	-		DZA65_RS18295	0.46	+0.5
3,948,225	-		DZA65_RS18295	0.57	+0.1