Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17990

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,871,047	-				-1.0
3,871,047	-				+0.9
3,871,049	-				-0.3
3,871,049	-				-1.8
3,871,052	-				+0.3
3,871,052	-				-0.4
3,871,052	-				-2.8
3,871,052	-				+0.9
3,871,052	-				-0.5
3,871,052	-				+0.0
3,871,223	+				-1.0
3,871,252	+				-0.6
3,871,253	-				+1.1
3,871,271	-				+2.5
3,871,392	+		DZA65_RS17985	0.30	-1.3
3,871,394	+		DZA65_RS17985	0.30	-0.3
3,871,395	-		DZA65_RS17985	0.31	+0.3
3,871,395	-		DZA65_RS17985	0.31	-0.9
3,871,520	+		DZA65_RS17985	0.53	-0.5
3,871,520	+		DZA65_RS17985	0.53	+0.2
3,871,521	-		DZA65_RS17985	0.53	-0.6
3,871,521	-		DZA65_RS17985	0.53	-1.1
3,871,780	-				-0.8
3,871,790	+				-1.7
3,871,790	+				+0.3
3,871,811	-				-0.3
3,871,811	-				+2.1
3,871,825	-				+0.9
3,871,825	-				-0.3
3,871,925	+				-0.3
3,871,926	-				+0.5
3,871,926	-				-0.4
3,871,926	-				-0.3
3,871,968	+				-1.0
3,871,968	+				-0.8
3,871,989	+				-0.7
3,871,990	-				-0.4
3,872,069	-				-0.5
3,872,069	-				-0.6
3,872,097	+		DZA65_RS17990	0.12	-2.8
3,872,097	+		DZA65_RS17990	0.12	-0.1
3,872,097	+		DZA65_RS17990	0.12	-1.8
3,872,153	+		DZA65_RS17990	0.18	-0.5
3,872,153	+		DZA65_RS17990	0.18	-2.5
3,872,153	+		DZA65_RS17990	0.18	+0.3
3,872,153	+		DZA65_RS17990	0.18	-0.7
3,872,153	+		DZA65_RS17990	0.18	+0.0
3,872,154	-		DZA65_RS17990	0.18	-0.7
3,872,154	-		DZA65_RS17990	0.18	-0.1
3,872,154	-		DZA65_RS17990	0.18	-0.9
3,872,154	-		DZA65_RS17990	0.18	-1.6
3,872,154	-		DZA65_RS17990	0.18	-0.5
3,872,154	-		DZA65_RS17990	0.18	-1.3
3,872,259	+		DZA65_RS17990	0.28	-0.9
3,872,259	+		DZA65_RS17990	0.28	-1.3
3,872,259	+		DZA65_RS17990	0.28	+1.6
3,872,259	+		DZA65_RS17990	0.28	-0.3
3,872,259	+		DZA65_RS17990	0.28	+0.3
3,872,259	+		DZA65_RS17990	0.28	+0.7
3,872,260	-		DZA65_RS17990	0.28	-1.3
3,872,260	-		DZA65_RS17990	0.28	-0.7
3,872,260	-		DZA65_RS17990	0.28	-1.7
3,872,260	-		DZA65_RS17990	0.28	+0.0
3,872,260	-				-0.3
3,872,260	-		DZA65_RS17990	0.28	+1.2
3,872,260	-		DZA65_RS17990	0.28	-0.2
3,872,264	+		DZA65_RS17990	0.29	-0.2
3,872,264	+		DZA65_RS17990	0.29	-1.1
3,872,265	-		DZA65_RS17990	0.29	-0.3
3,872,332	+		DZA65_RS17990	0.35	-0.8
3,872,332	+		DZA65_RS17990	0.35	-2.0
3,872,332	+		DZA65_RS17990	0.35	-1.3
3,872,332	+		DZA65_RS17990	0.35	-0.9
3,872,502	+		DZA65_RS17990	0.52	-1.0
3,872,502	+		DZA65_RS17990	0.52	-0.7
3,872,502	+		DZA65_RS17990	0.52	-0.8
3,872,502	+		DZA65_RS17990	0.52	+0.1
3,872,503	-		DZA65_RS17990	0.52	+0.3
3,872,503	-		DZA65_RS17990	0.52	-0.5
3,872,503	-		DZA65_RS17990	0.52	-0.8
3,872,559	+		DZA65_RS17990	0.57	-0.2
3,872,559	+		DZA65_RS17990	0.57	+0.3
3,872,560	-		DZA65_RS17990	0.57	+0.2
3,872,560	-		DZA65_RS17990	0.57	-0.4
3,872,586	+		DZA65_RS17990	0.60	-0.9
3,872,586	+		DZA65_RS17990	0.60	-1.3
3,872,586	+		DZA65_RS17990	0.60	-0.4
3,872,586	+		DZA65_RS17990	0.60	-0.3
3,872,586	+		DZA65_RS17990	0.60	-1.1
3,872,587	-		DZA65_RS17990	0.60	+0.3
3,872,587	-		DZA65_RS17990	0.60	+0.9
3,872,587	-		DZA65_RS17990	0.60	-1.3
3,872,587	-		DZA65_RS17990	0.60	-0.6
3,872,587	-		DZA65_RS17990	0.60	-0.2
3,872,637	+		DZA65_RS17990	0.65	-0.8
3,872,725	+		DZA65_RS17990	0.73	-0.1
3,872,726	-		DZA65_RS17990	0.73	-0.4
3,872,779	-		DZA65_RS17990	0.78	-0.7
3,872,832	+		DZA65_RS17990	0.84	-0.6
3,872,832	+		DZA65_RS17990	0.84	-0.9
3,872,839	-		DZA65_RS17990	0.84	+0.2
3,872,850	+		DZA65_RS17990	0.85	-0.4
3,872,851	-		DZA65_RS17990	0.85	+0.3
3,872,851	-		DZA65_RS17990	0.85	+0.7
3,872,856	+		DZA65_RS17990	0.86	+0.1
3,872,875	+		DZA65_RS17990	0.88	-0.2
3,872,901	+				-0.3
3,872,901	+				-1.3
3,872,902	-				-0.8
3,872,902	-				-2.7
3,872,902	-				-1.7
3,872,902	-				-1.1
3,872,902	-				-0.7
3,872,902	-				+0.3
3,872,902	-				-0.7
3,872,902	-				-0.7
3,872,977	-				+0.9
3,872,992	+				-0.8
3,872,993	-				+0.1
3,873,031	-				-0.8
3,873,076	+		DZA65_RS17995	0.13	-0.4
3,873,077	-		DZA65_RS17995	0.13	-0.1
3,873,105	+		DZA65_RS17995	0.17	-0.4
3,873,105	+		DZA65_RS17995	0.17	-0.8
3,873,105	+		DZA65_RS17995	0.17	-0.6
3,873,105	+		DZA65_RS17995	0.17	-1.1
3,873,105	+		DZA65_RS17995	0.17	+0.4
3,873,105	+		DZA65_RS17995	0.17	-1.7
3,873,105	+		DZA65_RS17995	0.17	+0.1
3,873,105	+		DZA65_RS17995	0.17	-0.5
3,873,105	+		DZA65_RS17995	0.17	+0.7
3,873,105	+		DZA65_RS17995	0.17	-0.6
3,873,105	+		DZA65_RS17995	0.17	+1.1
3,873,105	+		DZA65_RS17995	0.17	-0.6
3,873,106	-		DZA65_RS17995	0.17	+0.7
3,873,106	-		DZA65_RS17995	0.17	-0.3
3,873,106	-		DZA65_RS17995	0.17	-0.2
3,873,106	-		DZA65_RS17995	0.17	+0.1
3,873,106	-		DZA65_RS17995	0.17	-0.7
3,873,107	+		DZA65_RS17995	0.17	-0.4
3,873,107	+		DZA65_RS17995	0.17	-1.7
3,873,107	+		DZA65_RS17995	0.17	-0.2
3,873,107	+		DZA65_RS17995	0.17	-1.3
3,873,107	+		DZA65_RS17995	0.17	+0.7
3,873,107	+		DZA65_RS17995	0.17	+0.3
3,873,107	+		DZA65_RS17995	0.17	-0.2
3,873,107	+		DZA65_RS17995	0.17	-1.1
3,873,107	+		DZA65_RS17995	0.17	-0.8
3,873,107	+		DZA65_RS17995	0.17	-0.0
3,873,107	+		DZA65_RS17995	0.17	-2.5
3,873,107	+		DZA65_RS17995	0.17	-2.0
3,873,107	+		DZA65_RS17995	0.17	+0.7
3,873,107	+		DZA65_RS17995	0.17	+0.3
3,873,107	+		DZA65_RS17995	0.17	+0.3
3,873,107	+		DZA65_RS17995	0.17	+0.3
3,873,107	+		DZA65_RS17995	0.17	-0.7
3,873,107	+		DZA65_RS17995	0.17	-1.4
3,873,107	+		DZA65_RS17995	0.17	+0.4
3,873,107	+		DZA65_RS17995	0.17	+0.3
3,873,108	-		DZA65_RS17995	0.18	+0.9
3,873,108	-		DZA65_RS17995	0.18	-0.8
3,873,108	-		DZA65_RS17995	0.18	-1.5
3,873,108	-		DZA65_RS17995	0.18	-0.2
3,873,108	-		DZA65_RS17995	0.18	-2.0
3,873,108	-		DZA65_RS17995	0.18	+0.5
3,873,108	-		DZA65_RS17995	0.18	-0.1
3,873,108	-		DZA65_RS17995	0.18	-2.3
3,873,108	-		DZA65_RS17995	0.18	-0.9
3,873,108	-		DZA65_RS17995	0.18	-0.0
3,873,108	-		DZA65_RS17995	0.18	-0.4
3,873,108	-		DZA65_RS17995	0.18	+0.9
3,873,108	-		DZA65_RS17995	0.18	+0.2
3,873,108	-		DZA65_RS17995	0.18	-1.3
3,873,108	-		DZA65_RS17995	0.18	+2.5
3,873,108	-		DZA65_RS17995	0.18	+0.7
3,873,108	-		DZA65_RS17995	0.18	-0.5
3,873,108	-		DZA65_RS17995	0.18	-1.5
3,873,108	-		DZA65_RS17995	0.18	+0.3
3,873,109	+		DZA65_RS17995	0.18	-0.8
3,873,109	+		DZA65_RS17995	0.18	-0.5
3,873,109	+		DZA65_RS17995	0.18	-0.9
3,873,109	+		DZA65_RS17995	0.18	-0.7
3,873,110	-		DZA65_RS17995	0.18	+0.9
3,873,110	-		DZA65_RS17995	0.18	-0.4
3,873,110	-		DZA65_RS17995	0.18	+0.1
3,873,110	-		DZA65_RS17995	0.18	-1.7
3,873,110	-				-1.7
3,873,110	-		DZA65_RS17995	0.18	+0.7
3,873,110	-		DZA65_RS17995	0.18	-2.5
3,873,110	-		DZA65_RS17995	0.18	-0.4
3,873,143	-		DZA65_RS17995	0.23	+0.3
3,873,157	+		DZA65_RS17995	0.25	+0.9
3,873,171	+		DZA65_RS17995	0.27	-1.0
3,873,171	+		DZA65_RS17995	0.27	-0.3
3,873,171	+		DZA65_RS17995	0.27	-0.7
3,873,171	+		DZA65_RS17995	0.27	-3.0
3,873,171	+		DZA65_RS17995	0.27	-1.3
3,873,171	+		DZA65_RS17995	0.27	+0.0
3,873,172	-		DZA65_RS17995	0.27	-0.5
3,873,172	-		DZA65_RS17995	0.27	-0.9
3,873,172	-		DZA65_RS17995	0.27	+0.0
3,873,172	-		DZA65_RS17995	0.27	-1.3
3,873,175	+		DZA65_RS17995	0.28	-0.7
3,873,176	-		DZA65_RS17995	0.28	-0.8
3,873,176	-		DZA65_RS17995	0.28	-0.5
3,873,176	-		DZA65_RS17995	0.28	-1.3
3,873,199	+		DZA65_RS17995	0.31	-1.1
3,873,200	-		DZA65_RS17995	0.32	-0.5
3,873,200	-		DZA65_RS17995	0.32	-0.5
3,873,200	-		DZA65_RS17995	0.32	+1.1
3,873,227	-		DZA65_RS17995	0.36	+1.7
3,873,258	+		DZA65_RS17995	0.41	+0.3
3,873,270	+		DZA65_RS17995	0.42	-0.2
3,873,270	+		DZA65_RS17995	0.42	-0.6
3,873,270	+		DZA65_RS17995	0.42	-0.3
3,873,270	+		DZA65_RS17995	0.42	+0.1
3,873,270	+		DZA65_RS17995	0.42	+0.6
3,873,270	+		DZA65_RS17995	0.42	-1.4
3,873,270	+		DZA65_RS17995	0.42	-0.3
3,873,271	-		DZA65_RS17995	0.43	-1.3
3,873,271	-		DZA65_RS17995	0.43	+0.8
3,873,271	-		DZA65_RS17995	0.43	-0.5
3,873,271	-		DZA65_RS17995	0.43	-0.7
3,873,271	-		DZA65_RS17995	0.43	+0.3
3,873,271	-		DZA65_RS17995	0.43	+0.1
3,873,271	-		DZA65_RS17995	0.43	-1.3
3,873,271	-		DZA65_RS17995	0.43	-0.3
3,873,271	-		DZA65_RS17995	0.43	-1.8
3,873,271	-		DZA65_RS17995	0.43	-0.8
3,873,301	+		DZA65_RS17995	0.47	-1.9
3,873,301	+		DZA65_RS17995	0.47	+0.6
3,873,398	-		DZA65_RS17995	0.62	-0.4
3,873,445	+		DZA65_RS17995	0.69	+0.6
3,873,445	+		DZA65_RS17995	0.69	-0.2
3,873,445	+		DZA65_RS17995	0.69	-0.7
3,873,445	+		DZA65_RS17995	0.69	-0.7
3,873,445	+		DZA65_RS17995	0.69	+0.2
3,873,446	-		DZA65_RS17995	0.69	+0.9
3,873,446	-		DZA65_RS17995	0.69	-0.3
3,873,448	+		DZA65_RS17995	0.70	-1.3
3,873,448	+		DZA65_RS17995	0.70	+0.6
3,873,449	-		DZA65_RS17995	0.70	-2.7
3,873,457	+		DZA65_RS17995	0.71	-0.1
3,873,457	+		DZA65_RS17995	0.71	-1.7
3,873,457	+		DZA65_RS17995	0.71	+0.2
3,873,458	-		DZA65_RS17995	0.71	-1.5
3,873,458	-		DZA65_RS17995	0.71	-0.6
3,873,458	-		DZA65_RS17995	0.71	-1.5
3,873,471	-		DZA65_RS17995	0.73	+0.5
3,873,522	-		DZA65_RS17995	0.81	-0.7
3,873,527	+		DZA65_RS17995	0.82	-0.4
3,873,527	+		DZA65_RS17995	0.82	-1.3
3,873,527	+		DZA65_RS17995	0.82	-0.2
3,873,528	-		DZA65_RS17995	0.82	+0.6
3,873,528	-		DZA65_RS17995	0.82	+0.1
3,873,528	-		DZA65_RS17995	0.82	-1.3
3,873,528	-		DZA65_RS17995	0.82	+0.5
3,873,528	-		DZA65_RS17995	0.82	-1.4
3,873,533	+		DZA65_RS17995	0.83	+1.7
3,873,533	+		DZA65_RS17995	0.83	-0.2
3,873,533	+		DZA65_RS17995	0.83	-0.3
3,873,533	+		DZA65_RS17995	0.83	+0.7
3,873,533	+		DZA65_RS17995	0.83	+0.7
3,873,534	-		DZA65_RS17995	0.83	-1.1
3,873,534	-		DZA65_RS17995	0.83	-0.9
3,873,534	-		DZA65_RS17995	0.83	-1.3
3,873,534	-		DZA65_RS17995	0.83	+0.2
3,873,534	-		DZA65_RS17995	0.83	-0.7
3,873,542	+		DZA65_RS17995	0.84	+0.3
3,873,542	+		DZA65_RS17995	0.84	+0.7
3,873,542	+		DZA65_RS17995	0.84	-2.0
3,873,543	-		DZA65_RS17995	0.84	-0.7
3,873,545	-		DZA65_RS17995	0.84	+1.2
3,873,593	+				+0.1
3,873,644	+				-0.4
3,873,644	+				+0.6
3,873,645	-				-0.9
3,873,645	-				-0.2
3,873,654	+				-1.3
3,873,654	+				+0.3
3,873,655	-				-0.1
3,873,655	-				-0.2
3,873,655	-				-0.4
3,873,666	+				-1.3
3,873,666	+				+0.7
3,873,666	+				+1.6
3,873,667	-				-1.5
3,873,669	+				-1.0
3,873,670	-				+1.0
3,873,670	-				+0.7
3,873,670	-				-0.7
3,873,686	+				+0.6
3,873,687	-				-0.0
3,873,695	-				-1.0
3,873,705	-				-1.5
3,873,718	+				-2.7
3,873,718	+				-1.4
3,873,718	+				+0.0
3,873,718	+				+0.3
3,873,718	+				+1.3
3,873,808	+		DZA65_RS18000	0.12	-1.0
3,873,809	-		DZA65_RS18000	0.12	+0.3
3,873,809	-		DZA65_RS18000	0.12	-1.5
3,873,809	-		DZA65_RS18000	0.12	+0.7
3,873,864	+		DZA65_RS18000	0.19	-1.1
3,873,878	+		DZA65_RS18000	0.21	-0.1
3,873,902	-		DZA65_RS18000	0.24	+0.1
3,873,907	+		DZA65_RS18000	0.24	-0.2
3,873,908	-		DZA65_RS18000	0.24	-0.2
3,873,914	+		DZA65_RS18000	0.25	+0.9
3,873,914	+		DZA65_RS18000	0.25	+0.9
3,873,914	+		DZA65_RS18000	0.25	-0.3
3,873,914	+		DZA65_RS18000	0.25	-0.3
3,873,914	+		DZA65_RS18000	0.25	+0.0
3,873,914	+		DZA65_RS18000	0.25	-2.0
3,873,914	+		DZA65_RS18000	0.25	-0.9
3,873,915	-		DZA65_RS18000	0.25	-0.8
3,873,915	-		DZA65_RS18000	0.25	+1.3
3,873,915	-		DZA65_RS18000	0.25	+0.1
3,873,915	-		DZA65_RS18000	0.25	+0.5
3,873,915	-		DZA65_RS18000	0.25	-0.2
3,873,915	-		DZA65_RS18000	0.25	-1.1
3,873,980	+		DZA65_RS18000	0.33	-1.3
3,873,981	-		DZA65_RS18000	0.33	-1.2
3,873,981	-		DZA65_RS18000	0.33	-0.7
3,873,997	+		DZA65_RS18000	0.35	-1.1