Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17675

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,805,759	+		DZA65_RS17665	0.45	-1.5
3,805,760	-		DZA65_RS17665	0.45	+0.9
3,805,761	+		DZA65_RS17665	0.45	-0.2
3,805,761	+		DZA65_RS17665	0.45	-0.6
3,805,762	-		DZA65_RS17665	0.45	-0.3
3,805,763	+		DZA65_RS17665	0.45	-0.6
3,805,764	-		DZA65_RS17665	0.45	-0.5
3,805,863	-		DZA65_RS17665	0.59	-1.2
3,805,897	-		DZA65_RS17665	0.63	-2.2
3,805,897	-		DZA65_RS17665	0.63	-0.2
3,805,899	+		DZA65_RS17665	0.64	+0.4
3,805,899	+		DZA65_RS17665	0.64	+0.5
3,805,972	+		DZA65_RS17665	0.73	-0.5
3,805,973	-		DZA65_RS17665	0.74	+0.5
3,806,032	+		DZA65_RS17665	0.82	+0.1
3,806,091	-		DZA65_RS17665	0.90	-0.6
3,806,149	+				+0.8
3,806,149	+				+0.3
3,806,149	+				+0.0
3,806,150	-				-0.0
3,806,150	-				-1.1
3,806,150	-				-0.6
3,806,157	+				+1.7
3,806,158	-				-1.1
3,806,158	-				-0.1
3,806,158	-				-2.8
3,806,158	-				+0.1
3,806,158	-				+1.6
3,806,159	+				+0.8
3,806,193	+				+0.9
3,806,193	+				-0.4
3,806,193	+				+2.2
3,806,194	-				-0.6
3,806,197	+				+0.1
3,806,197	+				-2.2
3,806,197	+				-0.9
3,806,198	-				-1.9
3,806,198	-				+2.5
3,806,242	+				-1.2
3,806,242	+				-1.0
3,806,243	-				-0.5
3,806,243	-				-1.6
3,806,243	-				+1.5
3,806,243	-				+0.4
3,806,250	+				+1.4
3,806,251	-				-0.8
3,806,278	-				-0.5
3,806,278	-				-1.2
3,806,304	+				-1.8
3,806,304	+				-0.1
3,806,304	+				-0.9
3,806,305	-				-0.3
3,806,306	+				-2.0
3,806,306	+				+0.4
3,806,306	+				-0.2
3,806,306	+				+0.7
3,806,306	+				+0.5
3,806,306	+				-2.5
3,806,307	-				-1.8
3,806,307	-				-0.3
3,806,309	-				-1.1
3,806,309	-				-0.2
3,806,309	-				-0.2
3,806,309	-				-0.2
3,806,310	+				-0.4
3,806,310	+				-0.3
3,806,310	+				+0.4
3,806,311	-				+1.6
3,806,311	-				+0.8
3,806,311	-				-1.2
3,806,311	-				-1.6
3,806,650	-				-1.7
3,806,650	-				-0.7
3,806,650	-				-0.5
3,806,659	-				+0.0
3,806,720	-				+0.4
3,806,722	+				+0.8
3,806,723	-				+0.7
3,806,723	-				+0.3
3,806,764	+		DZA65_RS17675	0.16	+0.2
3,806,764	+		DZA65_RS17675	0.16	-0.5
3,806,764	+		DZA65_RS17675	0.16	-0.2
3,806,764	+		DZA65_RS17675	0.16	-1.8
3,806,765	-		DZA65_RS17675	0.16	+0.3
3,806,765	-		DZA65_RS17675	0.16	-0.1
3,806,766	+		DZA65_RS17675	0.16	-0.2
3,806,766	+		DZA65_RS17675	0.16	-0.2
3,806,766	+		DZA65_RS17675	0.16	+1.7
3,806,788	+		DZA65_RS17675	0.20	-0.8
3,806,788	+		DZA65_RS17675	0.20	+0.2
3,806,788	+		DZA65_RS17675	0.20	-0.2
3,806,788	+		DZA65_RS17675	0.20	-0.0
3,806,789	-		DZA65_RS17675	0.20	+0.2
3,806,789	-		DZA65_RS17675	0.20	-0.7
3,806,789	-		DZA65_RS17675	0.20	+0.6
3,806,792	+		DZA65_RS17675	0.21	+0.3
3,806,792	+		DZA65_RS17675	0.21	+0.3
3,806,792	+		DZA65_RS17675	0.21	+0.0
3,806,792	+		DZA65_RS17675	0.21	-0.4
3,806,793	-		DZA65_RS17675	0.21	-0.5
3,806,793	-		DZA65_RS17675	0.21	-1.1
3,806,793	-		DZA65_RS17675	0.21	-0.7
3,806,793	-				+0.8
3,806,793	-		DZA65_RS17675	0.21	+0.5
3,806,793	-		DZA65_RS17675	0.21	+1.3
3,806,795	+		DZA65_RS17675	0.21	-0.3
3,806,795	+		DZA65_RS17675	0.21	-2.0
3,806,795	+		DZA65_RS17675	0.21	+0.4
3,806,795	+		DZA65_RS17675	0.21	+0.2
3,806,796	-		DZA65_RS17675	0.21	-0.8
3,806,802	+		DZA65_RS17675	0.22	+0.2
3,806,802	+		DZA65_RS17675	0.22	-0.1
3,806,826	+		DZA65_RS17675	0.26	+0.2
3,806,826	+		DZA65_RS17675	0.26	-0.7
3,806,826	+		DZA65_RS17675	0.26	-0.3
3,806,826	+		DZA65_RS17675	0.26	+1.8
3,806,826	+		DZA65_RS17675	0.26	-0.1
3,806,827	-		DZA65_RS17675	0.27	-0.8
3,806,859	+		DZA65_RS17675	0.32	-2.7
3,806,865	-		DZA65_RS17675	0.33	-1.5
3,806,899	-		DZA65_RS17675	0.39	+0.3
3,806,920	+		DZA65_RS17675	0.43	+1.7
3,806,920	+		DZA65_RS17675	0.43	+1.0
3,806,921	-		DZA65_RS17675	0.43	-0.8
3,806,985	-		DZA65_RS17675	0.54	+0.9
3,806,992	+		DZA65_RS17675	0.55	-2.7
3,806,993	-		DZA65_RS17675	0.55	-1.0
3,807,029	-		DZA65_RS17675	0.61	+0.6
3,807,029	-		DZA65_RS17675	0.61	+1.1
3,807,045	+		DZA65_RS17675	0.64	-0.6
3,807,051	+		DZA65_RS17675	0.65	-0.5
3,807,052	-		DZA65_RS17675	0.65	-1.8
3,807,052	-		DZA65_RS17675	0.65	-1.0
3,807,052	-		DZA65_RS17675	0.65	+0.1
3,807,052	-		DZA65_RS17675	0.65	-0.7
3,807,091	+		DZA65_RS17675	0.72	-1.2
3,807,092	-		DZA65_RS17675	0.72	-0.4
3,807,092	-		DZA65_RS17675	0.72	-0.5
3,807,100	-		DZA65_RS17675	0.73	-0.3
3,807,100	-		DZA65_RS17675	0.73	-0.1
3,807,100	-		DZA65_RS17675	0.73	-1.0
3,807,114	+		DZA65_RS17675	0.76	-2.0
3,807,114	+		DZA65_RS17675	0.76	-2.5
3,807,115	-		DZA65_RS17675	0.76	+0.3
3,807,190	-		DZA65_RS17675	0.89	-1.8
3,807,190	-		DZA65_RS17675	0.89	+0.1
3,807,226	+				+1.6
3,807,227	-				-1.2
3,807,227	-				-0.4
3,807,269	-				-3.4
3,807,269	-				+0.6
3,807,269	-				-1.8
3,807,379	+				+1.7
3,807,379	+				-0.9
3,807,379	+				-1.5
3,807,380	-				+0.1
3,807,380	-				-1.4
3,807,380	-				-1.2
3,807,380	-				+0.4
3,807,380	-				-2.2
3,807,380	-				-0.3
3,807,381	+				-0.5
3,807,381	+				-0.2
3,807,381	+				+0.7
3,807,381	+				-0.2
3,807,381	+				+0.1
3,807,381	+				+0.1
3,807,381	+				-1.5
3,807,381	+				+0.3
3,807,381	+				-0.1
3,807,382	-				+0.2
3,807,382	-				+0.3
3,807,382	-				-1.7
3,807,382	-				+0.0
3,807,382	-				-0.3
3,807,382	-				-0.2
3,807,382	-				+0.1
3,807,382	-				-2.2
3,807,382	-				+0.3
3,807,390	+				-1.2
3,807,390	+				-1.0
3,807,390	+				-0.5
3,807,390	+				+1.2
3,807,391	-				-1.0
3,807,391	-				-0.7
3,807,391	-				-0.2
3,807,391	-				-0.7
3,807,423	+				+0.8
3,807,423	+				-0.4
3,807,423	+				-0.5
3,807,436	+		DZA65_RS17680	0.11	-1.5
3,807,436	+		DZA65_RS17680	0.11	-0.0
3,807,436	+		DZA65_RS17680	0.11	+0.4
3,807,436	+		DZA65_RS17680	0.11	-0.4
3,807,437	-		DZA65_RS17680	0.11	+0.3
3,807,437	-		DZA65_RS17680	0.11	+0.4
3,807,437	-		DZA65_RS17680	0.11	+1.0
3,807,437	-		DZA65_RS17680	0.11	+1.4
3,807,438	+		DZA65_RS17680	0.11	+0.0
3,807,438	+		DZA65_RS17680	0.11	+0.4
3,807,438	+		DZA65_RS17680	0.11	-0.5
3,807,438	+		DZA65_RS17680	0.11	-0.4
3,807,438	+		DZA65_RS17680	0.11	-0.1
3,807,438	+		DZA65_RS17680	0.11	-0.6
3,807,438	+		DZA65_RS17680	0.11	-1.6
3,807,438	+		DZA65_RS17680	0.11	-0.3
3,807,438	+		DZA65_RS17680	0.11	-1.6
3,807,438	+		DZA65_RS17680	0.11	-0.6
3,807,438	+		DZA65_RS17680	0.11	+2.4
3,807,438	+		DZA65_RS17680	0.11	-0.5
3,807,438	+		DZA65_RS17680	0.11	+0.1
3,807,438	+		DZA65_RS17680	0.11	-1.2
3,807,438	+		DZA65_RS17680	0.11	-0.2
3,807,438	+		DZA65_RS17680	0.11	-0.3
3,807,438	+		DZA65_RS17680	0.11	-1.0
3,807,439	-		DZA65_RS17680	0.11	+1.6
3,807,439	-		DZA65_RS17680	0.11	-1.8
3,807,439	-		DZA65_RS17680	0.11	-0.0
3,807,439	-		DZA65_RS17680	0.11	-0.1
3,807,439	-		DZA65_RS17680	0.11	+0.2
3,807,439	-		DZA65_RS17680	0.11	+0.4
3,807,439	-		DZA65_RS17680	0.11	+0.5
3,807,439	-		DZA65_RS17680	0.11	+0.9
3,807,439	-		DZA65_RS17680	0.11	+0.4
3,807,439	-		DZA65_RS17680	0.11	+0.2
3,807,460	+		DZA65_RS17680	0.13	-1.0
3,807,501	+		DZA65_RS17680	0.17	-0.6
3,807,501	+		DZA65_RS17680	0.17	+2.2
3,807,502	-		DZA65_RS17680	0.17	-0.6
3,807,502	-		DZA65_RS17680	0.17	+1.4
3,807,574	+		DZA65_RS17680	0.24	-1.2
3,807,593	-		DZA65_RS17680	0.25	+1.4
3,807,593	-		DZA65_RS17680	0.25	+0.4
3,807,593	-		DZA65_RS17680	0.25	+0.0
3,807,641	+		DZA65_RS17680	0.30	-1.2
3,807,641	+		DZA65_RS17680	0.30	-2.6
3,807,641	+		DZA65_RS17680	0.30	+1.4
3,807,641	+		DZA65_RS17680	0.30	-1.6
3,807,641	+		DZA65_RS17680	0.30	+1.0
3,807,641	+		DZA65_RS17680	0.30	-0.8
3,807,641	+		DZA65_RS17680	0.30	+0.1
3,807,641	+		DZA65_RS17680	0.30	+0.4
3,807,641	+		DZA65_RS17680	0.30	-0.3
3,807,641	+		DZA65_RS17680	0.30	-1.0
3,807,642	-		DZA65_RS17680	0.30	+1.9
3,807,642	-		DZA65_RS17680	0.30	-0.4
3,807,685	+		DZA65_RS17680	0.34	+0.0
3,807,685	+		DZA65_RS17680	0.34	+0.4
3,807,776	+		DZA65_RS17680	0.42	+0.2
3,807,777	-		DZA65_RS17680	0.43	+0.1
3,807,777	-		DZA65_RS17680	0.43	+1.2
3,807,825	-		DZA65_RS17680	0.47	+0.8
3,807,825	-		DZA65_RS17680	0.47	+1.0
3,807,825	-		DZA65_RS17680	0.47	+0.1
3,807,870	+		DZA65_RS17680	0.51	+1.6
3,807,870	+		DZA65_RS17680	0.51	-2.0
3,807,871	-		DZA65_RS17680	0.51	-0.8
3,807,871	-		DZA65_RS17680	0.51	-1.2
3,807,871	-		DZA65_RS17680	0.51	+1.2
3,807,871	-		DZA65_RS17680	0.51	+0.2
3,807,871	-		DZA65_RS17680	0.51	+0.7
3,807,977	-		DZA65_RS17680	0.61	+0.1
3,807,978	+		DZA65_RS17680	0.61	+0.2
3,807,978	+		DZA65_RS17680	0.61	+0.4
3,807,978	+		DZA65_RS17680	0.61	+0.6
3,807,978	+		DZA65_RS17680	0.61	-0.3
3,807,979	-		DZA65_RS17680	0.61	-1.0
3,807,979	-		DZA65_RS17680	0.61	+0.1
3,807,979	-		DZA65_RS17680	0.61	+0.1
3,807,979	-		DZA65_RS17680	0.61	+1.4
3,807,979	-		DZA65_RS17680	0.61	+0.0
3,808,105	+		DZA65_RS17680	0.73	-0.5
3,808,105	+		DZA65_RS17680	0.73	-1.4
3,808,132	+		DZA65_RS17680	0.76	-0.2
3,808,132	+		DZA65_RS17680	0.76	-0.2
3,808,135	-		DZA65_RS17680	0.76	-0.1
3,808,150	+		DZA65_RS17680	0.77	+1.0
3,808,151	-		DZA65_RS17680	0.77	+0.6
3,808,180	-		DZA65_RS17680	0.80	-1.5
3,808,248	-		DZA65_RS17680	0.86	-0.5