Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17650

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,801,722	+				+1.0
3,801,722	+				-0.5
3,801,722	+				+0.8
3,801,723	-				-1.0
3,801,723	-				-1.5
3,801,728	-				-1.1
3,801,728	-				-2.8
3,801,728	-				-1.3
3,801,731	+				+0.6
3,801,732	-				-2.6
3,801,732	-				-1.2
3,801,732	-				-1.6
3,801,899	+				-1.0
3,801,899	+				+0.9
3,801,899	+				+0.1
3,801,900	-				-0.3
3,801,900	-				+1.4
3,801,900	-				-1.8
3,801,900	-				-2.5
3,801,900	-				+0.7
3,801,900	-				-0.2
3,801,900	-				-0.2
3,801,936	-				-1.4
3,801,969	+				+0.1
3,801,969	+				+1.0
3,802,090	-				+0.7
3,802,157	+				+0.1
3,802,158	-				-0.5
3,802,158	-				+1.7
3,802,158	-				+0.6
3,802,183	-				-1.9
3,802,225	+				-1.0
3,802,225	+				-0.0
3,802,225	+				-0.6
3,802,247	-				-2.3
3,802,247	-				-0.3
3,802,247	-				-0.1
3,802,292	-				-1.2
3,802,292	-				+0.1
3,802,301	+				+0.1
3,802,301	+				+1.8
3,802,301	+				-1.6
3,802,302	-				-2.5
3,802,302	-				-0.6
3,802,302	-				-1.2
3,802,359	+				+0.1
3,802,359	+				+1.3
3,802,359	+				+0.8
3,802,359	+				+0.4
3,802,359	+				-2.0
3,802,360	-				+0.1
3,802,360	-				-0.2
3,802,362	+				+0.4
3,802,363	-				-0.6
3,802,363	-				-2.6
3,802,404	+		DZA65_RS17645	0.18	-2.0
3,802,404	+		DZA65_RS17645	0.18	-0.8
3,802,404	+		DZA65_RS17645	0.18	-0.5
3,802,405	-		DZA65_RS17645	0.18	-0.4
3,802,409	+		DZA65_RS17645	0.19	-1.5
3,802,501	+		DZA65_RS17645	0.50	+0.2
3,802,501	+		DZA65_RS17645	0.50	-1.6
3,802,502	-		DZA65_RS17645	0.51	+0.3
3,802,578	+		DZA65_RS17645	0.76	-1.0
3,802,579	-		DZA65_RS17645	0.76	+0.4
3,802,579	-		DZA65_RS17645	0.76	+0.4
3,802,615	+		DZA65_RS17645	0.89	-0.2
3,802,615	+		DZA65_RS17645	0.89	+0.6
3,802,615	+		DZA65_RS17645	0.89	-1.0
3,802,616	-		DZA65_RS17645	0.89	+0.2
3,802,616	-		DZA65_RS17645	0.89	+0.3
3,802,616	-		DZA65_RS17645	0.89	+0.8
3,802,619	-				-1.1
3,802,619	-				-0.6
3,802,619	-				+0.8
3,802,676	-				-0.2
3,802,676	-				-0.1
3,802,718	+				-0.2
3,802,718	+				-1.2
3,802,718	+				+0.9
3,802,718	+				-1.2
3,802,718	+				+0.5
3,802,719	-				-1.4
3,802,719	-				+0.5
3,802,731	+				+0.8
3,802,732	-				+1.2
3,802,819	+		DZA65_RS17650	0.12	+0.2
3,802,819	+		DZA65_RS17650	0.12	+0.4
3,802,819	+		DZA65_RS17650	0.12	-0.9
3,802,819	+		DZA65_RS17650	0.12	-0.2
3,802,819	+		DZA65_RS17650	0.12	+0.5
3,802,819	+		DZA65_RS17650	0.12	-1.4
3,802,819	+		DZA65_RS17650	0.12	-1.0
3,802,819	+		DZA65_RS17650	0.12	+0.0
3,802,819	+		DZA65_RS17650	0.12	-1.6
3,802,820	-		DZA65_RS17650	0.12	-1.0
3,802,820	-		DZA65_RS17650	0.12	+0.9
3,802,820	-		DZA65_RS17650	0.12	-0.2
3,802,820	-		DZA65_RS17650	0.12	+0.4
3,802,820	-		DZA65_RS17650	0.12	+0.2
3,802,820	-		DZA65_RS17650	0.12	-0.6
3,802,964	-		DZA65_RS17650	0.29	-1.2
3,802,983	+		DZA65_RS17650	0.32	+1.2
3,802,983	+		DZA65_RS17650	0.32	+1.1
3,802,983	+		DZA65_RS17650	0.32	+0.5
3,802,983	+		DZA65_RS17650	0.32	+0.9
3,802,983	+		DZA65_RS17650	0.32	+0.3
3,802,983	+		DZA65_RS17650	0.32	+0.4
3,802,984	-		DZA65_RS17650	0.32	-2.0
3,802,984	-		DZA65_RS17650	0.32	+0.9
3,802,984	-		DZA65_RS17650	0.32	+0.2
3,802,984	-		DZA65_RS17650	0.32	-0.5
3,803,025	+		DZA65_RS17650	0.37	+0.5
3,803,026	-		DZA65_RS17650	0.37	+0.8
3,803,094	-		DZA65_RS17650	0.45	-2.2
3,803,170	+		DZA65_RS17650	0.54	+0.4
3,803,170	+		DZA65_RS17650	0.54	+2.7
3,803,170	+		DZA65_RS17650	0.54	+0.5
3,803,170	+		DZA65_RS17650	0.54	+0.8
3,803,170	+		DZA65_RS17650	0.54	+0.3
3,803,170	+		DZA65_RS17650	0.54	-2.0
3,803,170	+		DZA65_RS17650	0.54	+0.1
3,803,170	+		DZA65_RS17650	0.54	+1.1
3,803,170	+		DZA65_RS17650	0.54	-0.6
3,803,171	-		DZA65_RS17650	0.54	-0.1
3,803,171	-		DZA65_RS17650	0.54	+1.2
3,803,171	-		DZA65_RS17650	0.54	+1.5
3,803,171	-		DZA65_RS17650	0.54	+0.2
3,803,171	-		DZA65_RS17650	0.54	+0.1
3,803,171	-		DZA65_RS17650	0.54	+0.8
3,803,174	+		DZA65_RS17650	0.55	+0.5
3,803,174	+		DZA65_RS17650	0.55	+2.4
3,803,174	+		DZA65_RS17650	0.55	+0.4
3,803,174	+		DZA65_RS17650	0.55	-0.6
3,803,174	+		DZA65_RS17650	0.55	-1.2
3,803,174	+		DZA65_RS17650	0.55	+0.4
3,803,174	+		DZA65_RS17650	0.55	+0.7
3,803,174	+		DZA65_RS17650	0.55	+0.4
3,803,174	+		DZA65_RS17650	0.55	-2.8
3,803,174	+		DZA65_RS17650	0.55	-1.0
3,803,174	+		DZA65_RS17650	0.55	+0.0
3,803,174	+		DZA65_RS17650	0.55	-0.3
3,803,174	+		DZA65_RS17650	0.55	-0.5
3,803,174	+		DZA65_RS17650	0.55	+0.1
3,803,174	+		DZA65_RS17650	0.55	-1.0
3,803,174	+		DZA65_RS17650	0.55	-0.9
3,803,175	-		DZA65_RS17650	0.55	-2.6
3,803,175	-		DZA65_RS17650	0.55	-2.5
3,803,175	-		DZA65_RS17650	0.55	+0.5
3,803,175	-		DZA65_RS17650	0.55	+1.4
3,803,230	+		DZA65_RS17650	0.61	+1.1
3,803,231	-		DZA65_RS17650	0.61	+0.2
3,803,231	-		DZA65_RS17650	0.61	-0.6
3,803,278	+		DZA65_RS17650	0.67	-0.6
3,803,279	-		DZA65_RS17650	0.67	-1.6
3,803,306	+		DZA65_RS17650	0.71	+0.1
3,803,307	-		DZA65_RS17650	0.71	+0.9
3,803,355	+		DZA65_RS17650	0.76	-2.5
3,803,355	+		DZA65_RS17650	0.76	-1.0
3,803,355	+		DZA65_RS17650	0.76	+0.6
3,803,355	+		DZA65_RS17650	0.76	-2.2
3,803,356	-		DZA65_RS17650	0.77	-0.3
3,803,443	+		DZA65_RS17650	0.87	+0.5
3,803,444	-		DZA65_RS17650	0.87	-1.0
3,803,629	+				+2.7
3,803,630	-				+0.4
3,803,630	-				-1.6
3,803,650	+				-1.1
3,803,650	+				+0.5
3,803,651	-				+0.7
3,803,651	-				+0.0
3,803,651	-				-0.4
3,803,780	+		DZA65_RS17655	0.62	-0.1
3,803,780	+		DZA65_RS17655	0.62	-0.8
3,803,780	+		DZA65_RS17655	0.62	+0.7
3,803,780	+		DZA65_RS17655	0.62	-1.0
3,803,781	-		DZA65_RS17655	0.63	+0.6
3,803,781	-		DZA65_RS17655	0.63	+0.5
3,803,784	+		DZA65_RS17655	0.64	-0.8
3,803,784	+		DZA65_RS17655	0.64	-1.2
3,803,784	+		DZA65_RS17655	0.64	+0.3
3,803,784	+		DZA65_RS17655	0.64	+0.4
3,803,784	+		DZA65_RS17655	0.64	+0.5
3,803,784	+		DZA65_RS17655	0.64	-1.0
3,803,784	+		DZA65_RS17655	0.64	+1.1
3,803,784	+		DZA65_RS17655	0.64	-1.2
3,803,784	+		DZA65_RS17655	0.64	+0.3
3,803,784	+		DZA65_RS17655	0.64	-1.2
3,803,784	+		DZA65_RS17655	0.64	+1.4
3,803,784	+		DZA65_RS17655	0.64	-0.5
3,803,785	-		DZA65_RS17655	0.65	-1.1
3,803,785	-		DZA65_RS17655	0.65	-1.0
3,803,785	-		DZA65_RS17655	0.65	+0.8
3,803,785	-		DZA65_RS17655	0.65	+1.6
3,803,785	-		DZA65_RS17655	0.65	+0.6
3,803,785	-		DZA65_RS17655	0.65	-0.5
3,803,785	-		DZA65_RS17655	0.65	+0.3
3,803,887	-				-0.5
3,803,895	+				+0.4
3,803,906	-				+0.1
3,803,923	+				-0.9
3,803,923	+				-0.4
3,803,923	+				-1.8
3,803,926	+				+1.1
3,803,926	+				-0.3
3,803,927	-				-0.6
3,803,931	-				+0.6
3,803,935	+				-0.0
3,803,935	+				-1.1
3,803,935	+				+0.9
3,803,935	+				-0.9
3,803,935	+				+0.2
3,803,936	-				+0.2
3,803,936	-				+0.5
3,804,000	+				-0.4
3,804,001	-				-1.2
3,804,001	-				+0.4
3,804,004	-				+0.2
3,804,004	-				+0.4
3,804,014	+				+0.7
3,804,015	-				-0.1
3,804,019	-				+0.4
3,804,019	-				+0.5
3,804,054	+				-1.5
3,804,081	-				+0.7
3,804,145	+		DZA65_RS17660	0.10	-1.1
3,804,163	+		DZA65_RS17660	0.12	+0.0
3,804,163	+		DZA65_RS17660	0.12	-1.5
3,804,164	-		DZA65_RS17660	0.12	-1.2
3,804,166	+		DZA65_RS17660	0.12	+0.7
3,804,240	-		DZA65_RS17660	0.17	-1.8
3,804,260	+		DZA65_RS17660	0.19	-0.1
3,804,264	+		DZA65_RS17660	0.19	+0.5
3,804,264	+		DZA65_RS17660	0.19	+1.0
3,804,266	+		DZA65_RS17660	0.19	+0.1
3,804,285	-				+0.4
3,804,285	-		DZA65_RS17660	0.21	-0.2
3,804,340	+		DZA65_RS17660	0.25	-0.8
3,804,341	-		DZA65_RS17660	0.25	-0.5
3,804,341	-		DZA65_RS17660	0.25	+0.4
3,804,341	-		DZA65_RS17660	0.25	+0.1
3,804,341	-		DZA65_RS17660	0.25	+0.4
3,804,374	-		DZA65_RS17660	0.28	-0.2
3,804,380	+		DZA65_RS17660	0.28	+1.7
3,804,384	+		DZA65_RS17660	0.28	-0.5
3,804,385	-		DZA65_RS17660	0.28	-0.3
3,804,441	-		DZA65_RS17660	0.33	-0.6
3,804,456	+		DZA65_RS17660	0.34	-1.1
3,804,509	-		DZA65_RS17660	0.38	+0.1
3,804,525	+		DZA65_RS17660	0.39	-0.4
3,804,526	-		DZA65_RS17660	0.39	-0.9
3,804,527	+		DZA65_RS17660	0.39	+0.1
3,804,527	+		DZA65_RS17660	0.39	+2.9
3,804,528	-		DZA65_RS17660	0.39	-1.5
3,804,528	-		DZA65_RS17660	0.39	+0.6
3,804,535	+		DZA65_RS17660	0.40	+0.2
3,804,535	+		DZA65_RS17660	0.40	-0.3
3,804,536	-		DZA65_RS17660	0.40	-0.6
3,804,536	-		DZA65_RS17660	0.40	+0.1