Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17500

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,769,608	-		DZA65_RS17495	0.37	+0.1
3,769,677	+		DZA65_RS17495	0.42	-1.1
3,769,677	+		DZA65_RS17495	0.42	-1.0
3,769,694	+		DZA65_RS17495	0.43	+0.3
3,769,694	+		DZA65_RS17495	0.43	+1.1
3,769,695	-		DZA65_RS17495	0.43	-1.0
3,769,695	-		DZA65_RS17495	0.43	+0.5
3,769,695	-		DZA65_RS17495	0.43	+0.2
3,769,697	+		DZA65_RS17495	0.43	+0.1
3,769,697	+		DZA65_RS17495	0.43	-2.4
3,769,697	+		DZA65_RS17495	0.43	-1.0
3,769,697	+		DZA65_RS17495	0.43	+0.3
3,769,697	+		DZA65_RS17495	0.43	+3.0
3,769,697	+		DZA65_RS17495	0.43	+0.7
3,769,698	-		DZA65_RS17495	0.43	+0.6
3,769,698	-		DZA65_RS17495	0.43	-0.2
3,769,756	+		DZA65_RS17495	0.47	-0.8
3,769,756	+				+0.9
3,769,756	+		DZA65_RS17495	0.47	+0.2
3,769,756	+		DZA65_RS17495	0.47	+0.9
3,769,757	-		DZA65_RS17495	0.47	+0.7
3,769,757	-		DZA65_RS17495	0.47	-0.7
3,769,757	-		DZA65_RS17495	0.47	+0.7
3,769,878	-		DZA65_RS17495	0.55	+0.2
3,769,936	+		DZA65_RS17495	0.59	+0.7
3,769,936	+		DZA65_RS17495	0.59	-2.2
3,769,936	+		DZA65_RS17495	0.59	+0.2
3,769,936	+		DZA65_RS17495	0.59	+2.2
3,769,937	-		DZA65_RS17495	0.59	+0.7
3,769,937	-		DZA65_RS17495	0.59	+0.0
3,769,937	-		DZA65_RS17495	0.59	-0.0
3,769,937	-		DZA65_RS17495	0.59	+0.5
3,769,937	-		DZA65_RS17495	0.59	-0.1
3,770,126	+		DZA65_RS17495	0.72	-0.5
3,770,127	-		DZA65_RS17495	0.72	-2.0
3,770,553	+				-0.2
3,770,628	-				+1.3
3,770,628	-				+0.4
3,770,655	-				-0.8
3,770,681	+		DZA65_RS17500	0.11	+0.3
3,770,681	+		DZA65_RS17500	0.11	+0.2
3,770,682	-		DZA65_RS17500	0.11	+2.8
3,770,682	-		DZA65_RS17500	0.11	+1.1
3,770,682	-		DZA65_RS17500	0.11	+0.0
3,770,721	-		DZA65_RS17500	0.15	-0.2
3,770,754	+		DZA65_RS17500	0.18	-0.9
3,770,848	-		DZA65_RS17500	0.27	+0.4
3,770,848	-		DZA65_RS17500	0.27	+0.3
3,770,880	+		DZA65_RS17500	0.30	-0.5
3,770,893	+		DZA65_RS17500	0.31	-1.2
3,770,958	+		DZA65_RS17500	0.37	+0.3
3,771,008	+		DZA65_RS17500	0.42	-0.8
3,771,008	+		DZA65_RS17500	0.42	+1.3
3,771,009	-		DZA65_RS17500	0.42	-0.2
3,771,009	-		DZA65_RS17500	0.42	-0.8
3,771,009	-		DZA65_RS17500	0.42	+0.9
3,771,027	+		DZA65_RS17500	0.44	+0.8
3,771,028	-				+0.8
3,771,109	+		DZA65_RS17500	0.52	+1.3
3,771,109	+		DZA65_RS17500	0.52	-0.2
3,771,109	+		DZA65_RS17500	0.52	-0.9
3,771,109	+		DZA65_RS17500	0.52	-0.1
3,771,109	+		DZA65_RS17500	0.52	-0.7
3,771,210	+		DZA65_RS17500	0.62	+0.1
3,771,211	-		DZA65_RS17500	0.62	+0.3
3,771,211	-		DZA65_RS17500	0.62	-0.9
3,771,268	+		DZA65_RS17500	0.67	+0.7
3,771,268	+		DZA65_RS17500	0.67	+0.9
3,771,268	+		DZA65_RS17500	0.67	+1.2
3,771,268	+		DZA65_RS17500	0.67	-0.7
3,771,268	+		DZA65_RS17500	0.67	+0.7
3,771,268	+		DZA65_RS17500	0.67	+1.1
3,771,269	-		DZA65_RS17500	0.67	+0.9
3,771,269	-		DZA65_RS17500	0.67	-1.5
3,771,269	-		DZA65_RS17500	0.67	-0.9
3,771,269	-		DZA65_RS17500	0.67	-0.7
3,771,269	-		DZA65_RS17500	0.67	-1.5
3,771,269	-		DZA65_RS17500	0.67	-3.6
3,771,269	-		DZA65_RS17500	0.67	-2.0
3,771,269	-		DZA65_RS17500	0.67	-0.8
3,771,269	-		DZA65_RS17500	0.67	-0.4
3,771,269	-		DZA65_RS17500	0.67	-1.7
3,771,269	-		DZA65_RS17500	0.67	+0.5
3,771,269	-		DZA65_RS17500	0.67	+0.5
3,771,269	-		DZA65_RS17500	0.67	+0.5
3,771,420	+		DZA65_RS17500	0.82	+0.8
3,771,420	+		DZA65_RS17500	0.82	-0.9
3,771,421	-		DZA65_RS17500	0.82	+0.2
3,771,575	+				+0.1
3,771,575	+				+1.1
3,771,575	+				+1.0
3,771,575	+				-0.2
3,771,576	-				-1.8
3,771,597	+				-0.2
3,771,597	+				-1.0
3,771,597	+				+1.5
3,771,598	-				-0.4
3,771,604	+				-0.4
3,771,604	+				+0.9
3,771,604	+				+1.3
3,771,604	+				-0.7
3,771,605	-				+0.5
3,771,647	+				+0.7
3,771,647	+				+0.7
3,771,647	+				+0.2
3,771,647	+				-0.4
3,771,855	+		DZA65_RS17505	0.26	-1.0
3,771,883	-		DZA65_RS17505	0.29	-0.1
3,771,943	+		DZA65_RS17505	0.35	-0.9
3,771,944	-		DZA65_RS17505	0.35	-0.4
3,771,944	-		DZA65_RS17505	0.35	+0.8
3,771,986	+		DZA65_RS17505	0.40	-3.0
3,771,986	+		DZA65_RS17505	0.40	+1.4
3,771,986	+		DZA65_RS17505	0.40	-0.2
3,771,986	+		DZA65_RS17505	0.40	-0.1
3,771,986	+		DZA65_RS17505	0.40	-0.3
3,771,987	-		DZA65_RS17505	0.40	+0.2
3,771,987	-		DZA65_RS17505	0.40	-1.5
3,772,012	+		DZA65_RS17505	0.42	+0.8
3,772,028	+		DZA65_RS17505	0.44	-1.1
3,772,028	+		DZA65_RS17505	0.44	+0.2
3,772,029	-		DZA65_RS17505	0.44	-0.7
3,772,029	-		DZA65_RS17505	0.44	-1.0
3,772,029	-		DZA65_RS17505	0.44	-0.6
3,772,029	-		DZA65_RS17505	0.44	-0.5
3,772,029	-		DZA65_RS17505	0.44	-2.2
3,772,160	+		DZA65_RS17505	0.57	+0.1
3,772,161	-		DZA65_RS17505	0.57	+1.0
3,772,161	-		DZA65_RS17505	0.57	-0.9
3,772,232	+		DZA65_RS17505	0.64	-0.2
3,772,232	+		DZA65_RS17505	0.64	+1.2
3,772,232	+		DZA65_RS17505	0.64	+0.3
3,772,232	+		DZA65_RS17505	0.64	-1.1
3,772,232	+		DZA65_RS17505	0.64	-2.1
3,772,232	+		DZA65_RS17505	0.64	+1.1
3,772,232	+		DZA65_RS17505	0.64	-0.1
3,772,233	-		DZA65_RS17505	0.64	-2.1
3,772,233	-		DZA65_RS17505	0.64	+0.3
3,772,233	-		DZA65_RS17505	0.64	-0.6
3,772,233	-		DZA65_RS17505	0.64	+2.2
3,772,233	-		DZA65_RS17505	0.64	-1.1
3,772,233	-		DZA65_RS17505	0.64	+0.9
3,772,233	-		DZA65_RS17505	0.64	-0.9
3,772,233	-		DZA65_RS17505	0.64	+0.8
3,772,233	-		DZA65_RS17505	0.64	+0.6
3,772,233	-		DZA65_RS17505	0.64	-0.7
3,772,283	+		DZA65_RS17505	0.69	+0.9
3,772,283	+		DZA65_RS17505	0.69	-0.1
3,772,283	+		DZA65_RS17505	0.69	-1.7
3,772,284	-		DZA65_RS17505	0.70	-0.5
3,772,284	-		DZA65_RS17505	0.70	-0.2
3,772,284	-		DZA65_RS17505	0.70	-2.8
3,772,284	-		DZA65_RS17505	0.70	+0.2
3,772,433	+		DZA65_RS17505	0.85	-1.5
3,772,433	+		DZA65_RS17505	0.85	+0.3
3,772,433	+		DZA65_RS17505	0.85	+1.1
3,772,433	+		DZA65_RS17505	0.85	+0.8
3,772,433	+		DZA65_RS17505	0.85	+0.3
3,772,434	-		DZA65_RS17505	0.85	+1.2
3,772,434	-		DZA65_RS17505	0.85	+0.4
3,772,434	-		DZA65_RS17505	0.85	-0.9
3,772,434	-		DZA65_RS17505	0.85	-1.7
3,772,434	-		DZA65_RS17505	0.85	-0.2
3,772,434	-		DZA65_RS17505	0.85	-1.2
3,772,434	-		DZA65_RS17505	0.85	-0.1
3,772,434	-		DZA65_RS17505	0.85	-1.0
3,772,438	+		DZA65_RS17505	0.85	+1.5
3,772,439	-		DZA65_RS17505	0.85	+0.5
3,772,439	-		DZA65_RS17505	0.85	+1.6