Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17320

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,732,619	-				-0.0
3,732,932	+				-2.0
3,732,932	+				-3.2
3,732,932	+				-0.1
3,732,935	+				-2.2
3,733,031	+				+1.4
3,733,031	+				+1.1
3,733,031	+				+0.3
3,733,031	+				-0.1
3,733,061	-				+0.7
3,733,104	+				-0.6
3,733,104	+				-0.8
3,733,105	-				-0.9
3,733,111	+				-0.2
3,733,111	+				+0.5
3,733,112	-				+0.0
3,733,112	-				-0.5
3,733,112	-				+0.3
3,733,122	+				+0.3
3,733,122	+				-0.5
3,733,122	+				-1.2
3,733,123	-				+1.7
3,733,123	-				-1.1
3,733,123	-				-0.0
3,733,123	-				-0.9
3,733,184	+				+0.1
3,733,185	-				+0.3
3,733,185	-				+0.6
3,733,191	+				+1.0
3,733,191	+				-0.8
3,733,265	+				-0.1
3,733,265	+				+0.3
3,733,266	-				+2.1
3,733,266	-				-2.0
3,733,266	-				-0.7
3,733,266	-				-0.7
3,733,266	-				+0.3
3,733,266	-				+0.5
3,733,329	+				-0.9
3,733,329	+				+0.1
3,733,330	-				-0.5
3,733,330	-				+1.3
3,733,351	+				-1.2
3,733,351	+				-1.2
3,733,351	+				-1.1
3,733,351	+				+0.3
3,733,352	-				-0.2
3,733,352	-				-2.2
3,733,352	-				+0.3
3,733,358	+				-1.0
3,733,390	+				-0.6
3,733,390	+				-0.7
3,733,392	+				-0.7
3,733,392	+				-0.3
3,733,416	+				+0.9
3,733,416	+				-0.3
3,733,417	-				+0.2
3,733,450	+		DZA65_RS17320	0.10	-0.2
3,733,450	+		DZA65_RS17320	0.10	-0.2
3,733,450	+		DZA65_RS17320	0.10	-1.0
3,733,450	+		DZA65_RS17320	0.10	-1.1
3,733,450	+		DZA65_RS17320	0.10	+0.1
3,733,450	+		DZA65_RS17320	0.10	+0.2
3,733,450	+		DZA65_RS17320	0.10	+0.8
3,733,450	+		DZA65_RS17320	0.10	-0.3
3,733,450	+		DZA65_RS17320	0.10	-1.5
3,733,451	-		DZA65_RS17320	0.10	-0.2
3,733,451	-		DZA65_RS17320	0.10	+0.3
3,733,451	-		DZA65_RS17320	0.10	+0.2
3,733,451	-		DZA65_RS17320	0.10	+0.4
3,733,451	-		DZA65_RS17320	0.10	+0.2
3,733,451	-		DZA65_RS17320	0.10	+2.3
3,733,451	-		DZA65_RS17320	0.10	-1.2
3,733,454	-		DZA65_RS17320	0.10	-1.4
3,733,454	-		DZA65_RS17320	0.10	-2.5
3,733,462	+		DZA65_RS17320	0.11	+1.0
3,733,479	-		DZA65_RS17320	0.11	-0.9
3,733,479	-		DZA65_RS17320	0.11	-0.4
3,733,479	-		DZA65_RS17320	0.11	-2.7
3,733,496	-		DZA65_RS17320	0.12	-0.3
3,733,505	-		DZA65_RS17320	0.12	-1.1
3,733,538	+		DZA65_RS17320	0.14	-2.7
3,733,538	+		DZA65_RS17320	0.14	-0.4
3,733,538	+		DZA65_RS17320	0.14	-1.4
3,733,538	+		DZA65_RS17320	0.14	-0.7
3,733,538	+		DZA65_RS17320	0.14	-0.7
3,733,538	+				+0.3
3,733,538	+		DZA65_RS17320	0.14	+0.3
3,733,538	+		DZA65_RS17320	0.14	+0.3
3,733,538	+		DZA65_RS17320	0.14	-0.9
3,733,538	+		DZA65_RS17320	0.14	-0.9
3,733,538	+		DZA65_RS17320	0.14	-0.1
3,733,538	+		DZA65_RS17320	0.14	-1.5
3,733,538	+		DZA65_RS17320	0.14	-0.4
3,733,539	-		DZA65_RS17320	0.14	-0.6
3,733,539	-		DZA65_RS17320	0.14	-1.2
3,733,539	-				-0.1
3,733,539	-		DZA65_RS17320	0.14	-0.0
3,733,539	-		DZA65_RS17320	0.14	-0.9
3,733,563	+		DZA65_RS17320	0.14	-0.7
3,733,563	+		DZA65_RS17320	0.14	-1.8
3,733,563	+		DZA65_RS17320	0.14	+0.1
3,733,563	+		DZA65_RS17320	0.14	-2.5
3,733,563	+		DZA65_RS17320	0.14	-2.2
3,733,563	+		DZA65_RS17320	0.14	-0.3
3,733,564	-		DZA65_RS17320	0.15	-1.2
3,733,564	-		DZA65_RS17320	0.15	+0.0
3,733,564	-		DZA65_RS17320	0.15	+0.5
3,733,643	+		DZA65_RS17320	0.18	-0.7
3,733,644	-		DZA65_RS17320	0.18	-0.8
3,733,644	-		DZA65_RS17320	0.18	-0.7
3,733,682	+		DZA65_RS17320	0.19	+0.9
3,733,682	+		DZA65_RS17320	0.19	-1.8
3,733,682	+		DZA65_RS17320	0.19	-0.9
3,733,683	-		DZA65_RS17320	0.19	+0.3
3,733,683	-		DZA65_RS17320	0.19	+0.6
3,733,683	-		DZA65_RS17320	0.19	-0.4
3,733,683	-		DZA65_RS17320	0.19	-1.7
3,733,691	+		DZA65_RS17320	0.19	-0.9
3,733,691	+		DZA65_RS17320	0.19	+0.3
3,733,691	+		DZA65_RS17320	0.19	-1.0
3,733,691	+		DZA65_RS17320	0.19	-0.7
3,733,692	-		DZA65_RS17320	0.20	+0.0
3,733,694	+		DZA65_RS17320	0.20	+0.1
3,733,695	-		DZA65_RS17320	0.20	+0.1
3,733,695	-		DZA65_RS17320	0.20	-1.0
3,733,695	-		DZA65_RS17320	0.20	-1.2
3,733,695	-		DZA65_RS17320	0.20	-0.1
3,733,695	-		DZA65_RS17320	0.20	+0.8
3,733,695	-		DZA65_RS17320	0.20	+1.6
3,733,695	-		DZA65_RS17320	0.20	+0.1
3,733,695	-		DZA65_RS17320	0.20	+0.3
3,733,695	-		DZA65_RS17320	0.20	-0.7
3,733,695	-		DZA65_RS17320	0.20	+0.6
3,733,695	-		DZA65_RS17320	0.20	-1.2
3,733,702	+		DZA65_RS17320	0.20	-0.7
3,733,703	-		DZA65_RS17320	0.20	-2.5
3,733,752	+		DZA65_RS17320	0.22	+0.2
3,733,752	+		DZA65_RS17320	0.22	-1.2
3,733,753	-		DZA65_RS17320	0.22	-0.1
3,733,766	+		DZA65_RS17320	0.22	+0.1
3,733,767	-		DZA65_RS17320	0.22	-0.7
3,733,798	-		DZA65_RS17320	0.24	+0.1
3,733,806	+		DZA65_RS17320	0.24	-0.8
3,733,864	+		DZA65_RS17320	0.26	-0.0
3,733,864	+		DZA65_RS17320	0.26	+0.1
3,733,864	+		DZA65_RS17320	0.26	-1.0
3,733,864	+		DZA65_RS17320	0.26	-2.0
3,733,864	+		DZA65_RS17320	0.26	+1.1
3,733,864	+		DZA65_RS17320	0.26	-2.0
3,733,864	+		DZA65_RS17320	0.26	-1.2
3,733,864	+		DZA65_RS17320	0.26	-0.3
3,733,865	-		DZA65_RS17320	0.26	-0.2
3,733,865	-		DZA65_RS17320	0.26	-0.7
3,733,865	-		DZA65_RS17320	0.26	-0.2
3,733,865	-		DZA65_RS17320	0.26	-1.7
3,733,865	-		DZA65_RS17320	0.26	-0.7
3,733,865	-		DZA65_RS17320	0.26	-2.2
3,733,865	-		DZA65_RS17320	0.26	+1.9
3,733,865	-		DZA65_RS17320	0.26	-2.2
3,733,865	-		DZA65_RS17320	0.26	+0.9
3,733,865	-		DZA65_RS17320	0.26	-0.1
3,733,865	-		DZA65_RS17320	0.26	+0.3
3,733,919	-		DZA65_RS17320	0.28	+0.1
3,733,919	-		DZA65_RS17320	0.28	+0.3
3,733,973	-		DZA65_RS17320	0.30	-0.4
3,734,080	+		DZA65_RS17320	0.35	+0.2
3,734,080	+		DZA65_RS17320	0.35	-1.6
3,734,279	+		DZA65_RS17320	0.42	+0.3
3,734,279	+		DZA65_RS17320	0.42	-2.0
3,734,280	-		DZA65_RS17320	0.42	-0.7
3,734,338	+		DZA65_RS17320	0.45	+0.0
3,734,339	-		DZA65_RS17320	0.45	+1.3
3,734,400	+		DZA65_RS17320	0.47	-0.4
3,734,400	+		DZA65_RS17320	0.47	+0.5
3,734,401	-		DZA65_RS17320	0.47	-2.0
3,734,507	-		DZA65_RS17320	0.51	+0.7
3,734,558	-		DZA65_RS17320	0.53	-0.6
3,734,584	+		DZA65_RS17320	0.54	-0.4
3,734,584	+		DZA65_RS17320	0.54	-1.3
3,734,584	+		DZA65_RS17320	0.54	+0.5
3,734,584	+		DZA65_RS17320	0.54	+0.2
3,734,584	+		DZA65_RS17320	0.54	-0.3
3,734,584	+		DZA65_RS17320	0.54	+0.0
3,734,584	+		DZA65_RS17320	0.54	+1.5
3,734,585	-		DZA65_RS17320	0.54	+1.1
3,734,585	-		DZA65_RS17320	0.54	+0.2
3,734,585	-		DZA65_RS17320	0.54	-0.1
3,734,585	-		DZA65_RS17320	0.54	+1.5
3,734,585	-		DZA65_RS17320	0.54	-0.7
3,734,585	-		DZA65_RS17320	0.54	+1.8
3,734,636	+		DZA65_RS17320	0.56	-1.2
3,734,636	+		DZA65_RS17320	0.56	+0.1
3,734,694	+		DZA65_RS17320	0.58	-1.2
3,734,719	+		DZA65_RS17320	0.59	-0.1
3,734,728	+		DZA65_RS17320	0.60	+1.3
3,734,728	+		DZA65_RS17320	0.60	-0.1
3,734,728	+		DZA65_RS17320	0.60	-0.7
3,734,728	+		DZA65_RS17320	0.60	-0.2
3,734,729	-		DZA65_RS17320	0.60	+0.8
3,734,729	-		DZA65_RS17320	0.60	-0.2
3,734,799	+		DZA65_RS17320	0.63	-1.0
3,734,799	+		DZA65_RS17320	0.63	+0.0
3,734,799	+		DZA65_RS17320	0.63	-0.8
3,734,799	+		DZA65_RS17320	0.63	-1.0
3,734,799	+		DZA65_RS17320	0.63	+1.5
3,734,800	-		DZA65_RS17320	0.63	-0.2
3,734,800	-		DZA65_RS17320	0.63	+0.0
3,734,800	-		DZA65_RS17320	0.63	-1.2
3,734,800	-		DZA65_RS17320	0.63	+0.9
3,734,800	-		DZA65_RS17320	0.63	-0.4
3,734,800	-		DZA65_RS17320	0.63	+1.2
3,734,831	+		DZA65_RS17320	0.64	+1.2
3,734,917	+		DZA65_RS17320	0.67	-1.5
3,734,917	+		DZA65_RS17320	0.67	-1.5
3,734,917	+		DZA65_RS17320	0.67	-2.7
3,734,917	+		DZA65_RS17320	0.67	-0.2
3,734,917	+		DZA65_RS17320	0.67	-1.1
3,734,918	-		DZA65_RS17320	0.67	-0.8
3,734,918	-		DZA65_RS17320	0.67	+0.1
3,734,918	-		DZA65_RS17320	0.67	-1.1
3,734,918	-		DZA65_RS17320	0.67	-0.5
3,734,963	-		DZA65_RS17320	0.69	-0.0
3,735,061	+		DZA65_RS17320	0.73	+0.3
3,735,097	+		DZA65_RS17320	0.74	-0.1
3,735,098	-		DZA65_RS17320	0.74	+0.8
3,735,098	-		DZA65_RS17320	0.74	-0.1
3,735,170	-		DZA65_RS17320	0.77	+0.6
3,735,170	-		DZA65_RS17320	0.77	-0.9
3,735,194	-		DZA65_RS17320	0.78	+0.5
3,735,420	-		DZA65_RS17320	0.87	-1.4
3,735,434	+		DZA65_RS17320	0.87	-2.0
3,735,434	+		DZA65_RS17320	0.87	-0.1
3,735,435	-		DZA65_RS17320	0.87	-0.9
3,735,435	-		DZA65_RS17320	0.87	+0.1
3,735,435	-		DZA65_RS17320	0.87	-0.1
3,735,487	+		DZA65_RS17320	0.89	-0.7
3,735,487	+		DZA65_RS17320	0.89	+0.0
3,735,487	+		DZA65_RS17320	0.89	+0.8
3,735,488	-		DZA65_RS17320	0.89	+0.5
3,735,488	-		DZA65_RS17320	0.89	+0.9
3,735,488	-				-0.2
3,735,488	-		DZA65_RS17320	0.89	-1.2
3,735,488	-		DZA65_RS17320	0.89	-0.2
3,735,488	-		DZA65_RS17320	0.89	-1.2
3,735,491	-		DZA65_RS17320	0.89	-0.1
3,735,583	+				-1.5
3,735,583	+				+0.7
3,735,584	-				-0.8
3,735,584	-				-0.1
3,735,745	+				-2.2
3,735,746	-				-1.2
3,735,763	+				-2.5
3,735,763	+				-1.1
3,735,764	-				-2.3
3,735,774	-				+0.9
3,735,774	-				+0.3
3,735,774	-				+0.3
3,735,775	+				-2.7
3,735,775	+				+0.7
3,735,775	+				-0.7
3,735,775	+				-2.7
3,735,775	+				+0.3
3,735,775	+				+1.5
3,735,775	+				+0.9
3,735,775	+				-0.4
3,735,775	+				-0.5
3,735,775	+				-0.2
3,735,775	+				-1.0
3,735,775	+				-0.5
3,735,775	+				+1.0
3,735,775	+				+0.7
3,735,775	+				-0.7
3,735,775	+				-0.3
3,735,776	-				+0.3
3,735,776	-				-0.1
3,735,776	-				+0.7
3,735,776	-				+0.1
3,735,776	-				-0.4
3,735,776	-				+0.6
3,735,776	-				-0.3
3,735,776	-				+1.2
3,735,776	-				-2.7
3,735,776	-				-0.6
3,735,776	-				-1.4
3,735,776	-				+0.1
3,735,776	-				-0.5
3,735,776	-				-1.3
3,735,776	-				+0.7
3,735,776	-				-1.2
3,735,776	-				+0.1
3,735,776	-				-0.1
3,735,776	-				-0.6
3,735,776	-				+0.3
3,735,776	-				-1.4
3,735,776	-				-0.7
3,735,776	-				-0.2
3,735,776	-				-1.5
3,735,776	-				-0.0
3,735,776	-				-0.0
3,735,776	-				+0.0
3,735,779	+				-0.9
3,735,779	+				+0.3
3,735,779	+				-0.7
3,735,780	-				-2.7
3,735,780	-				-0.8
3,735,780	-				+0.0
3,735,780	-				-0.4
3,735,780	-				+0.2
3,735,805	+				+0.8
3,735,805	+				-0.1
3,735,806	-				+0.9
3,735,806	-				+1.3
3,735,847	+				+0.6
3,735,848	-				+0.1
3,735,848	-				+0.5
3,735,850	+				-0.7
3,735,850	+				-0.6
3,735,851	-				+0.0
3,735,853	+				-1.1
3,735,854	-				-0.5
3,735,854	-				+0.3
3,735,895	+				-0.2
3,735,900	+				+0.3
3,735,900	+				-1.2
3,735,901	-				-0.5
3,735,901	-				+0.5
3,735,901	-				+0.8
3,735,902	+				-1.2
3,735,903	-				-0.7
3,735,903	-				-1.2
3,735,903	-				+0.7
3,735,903	-				+1.3
3,735,925	+				-0.1
3,735,925	+				-1.4
3,735,926	-				+0.3
3,735,926	-				-0.5
3,735,982	+		DZA65_RS17325	0.11	-0.1
3,735,982	+		DZA65_RS17325	0.11	+0.9
3,735,983	-		DZA65_RS17325	0.12	+0.1
3,735,983	-		DZA65_RS17325	0.12	-1.7
3,735,983	-		DZA65_RS17325	0.12	-1.6
3,735,983	-		DZA65_RS17325	0.12	+0.8
3,735,983	-		DZA65_RS17325	0.12	+1.1
3,735,983	-		DZA65_RS17325	0.12	-1.3
3,735,983	-		DZA65_RS17325	0.12	-1.2
3,735,983	-		DZA65_RS17325	0.12	+0.6
3,735,983	-		DZA65_RS17325	0.12	-1.0
3,736,025	+		DZA65_RS17325	0.17	-0.7
3,736,031	+		DZA65_RS17325	0.18	+0.3
3,736,031	+		DZA65_RS17325	0.18	+0.3
3,736,048	-		DZA65_RS17325	0.21	+0.9
3,736,048	-		DZA65_RS17325	0.21	-0.5
3,736,048	-		DZA65_RS17325	0.21	+0.6
3,736,052	-		DZA65_RS17325	0.21	+1.5
3,736,052	-		DZA65_RS17325	0.21	-2.6
3,736,052	-		DZA65_RS17325	0.21	-0.2
3,736,052	-		DZA65_RS17325	0.21	+0.0
3,736,067	-		DZA65_RS17325	0.23	-0.7
3,736,067	-		DZA65_RS17325	0.23	+1.9
3,736,081	+		DZA65_RS17325	0.25	-0.6
3,736,081	+		DZA65_RS17325	0.25	-0.8
3,736,081	+		DZA65_RS17325	0.25	-0.6
3,736,082	-		DZA65_RS17325	0.25	-0.2
3,736,114	+		DZA65_RS17325	0.30	-0.9
3,736,114	+		DZA65_RS17325	0.30	-0.5
3,736,114	+		DZA65_RS17325	0.30	-0.5
3,736,114	+		DZA65_RS17325	0.30	-0.1
3,736,114	+		DZA65_RS17325	0.30	+0.7
3,736,114	+		DZA65_RS17325	0.30	-1.7
3,736,114	+		DZA65_RS17325	0.30	-0.4
3,736,114	+		DZA65_RS17325	0.30	+0.9
3,736,114	+		DZA65_RS17325	0.30	+1.1
3,736,114	+		DZA65_RS17325	0.30	-0.6
3,736,114	+		DZA65_RS17325	0.30	-0.9
3,736,115	-		DZA65_RS17325	0.30	-0.8
3,736,115	-		DZA65_RS17325	0.30	+0.8
3,736,115	-		DZA65_RS17325	0.30	+0.1
3,736,115	-		DZA65_RS17325	0.30	-0.0
3,736,115	-		DZA65_RS17325	0.30	-0.1
3,736,115	-		DZA65_RS17325	0.30	-0.6
3,736,115	-		DZA65_RS17325	0.30	-1.0
3,736,115	-		DZA65_RS17325	0.30	-0.5
3,736,115	-		DZA65_RS17325	0.30	+0.2
3,736,214	+		DZA65_RS17325	0.43	+0.3
3,736,214	+		DZA65_RS17325	0.43	-0.5
3,736,214	+		DZA65_RS17325	0.43	-1.2
3,736,215	-		DZA65_RS17325	0.44	+0.3
3,736,215	-		DZA65_RS17325	0.44	-0.1
3,736,354	+		DZA65_RS17325	0.63	-2.4
3,736,354	+		DZA65_RS17325	0.63	-1.7
3,736,354	+		DZA65_RS17325	0.63	-1.1
3,736,354	+				-0.7
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3,736,354	+		DZA65_RS17325	0.63	-1.0
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3,736,355	-		DZA65_RS17325	0.63	-1.2
3,736,355	-		DZA65_RS17325	0.63	+0.3
3,736,355	-		DZA65_RS17325	0.63	-0.7
3,736,355	-		DZA65_RS17325	0.63	+1.7
3,736,355	-		DZA65_RS17325	0.63	-0.3
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3,736,355	-		DZA65_RS17325	0.63	-0.4
3,736,356	+		DZA65_RS17325	0.63	-0.3
3,736,356	+		DZA65_RS17325	0.63	-0.4
3,736,356	+		DZA65_RS17325	0.63	-1.1
3,736,357	-		DZA65_RS17325	0.63	-2.5
3,736,357	-		DZA65_RS17325	0.63	+2.0
3,736,357	-		DZA65_RS17325	0.63	+0.7
3,736,539	+		DZA65_RS17325	0.88	+0.4
3,736,539	+		DZA65_RS17325	0.88	+0.2
3,736,539	+		DZA65_RS17325	0.88	+2.5
3,736,539	+		DZA65_RS17325	0.88	-2.2
3,736,540	-		DZA65_RS17325	0.88	+0.3
3,736,540	-		DZA65_RS17325	0.88	-1.5
3,736,540	-		DZA65_RS17325	0.88	-0.5
3,736,578	+				-0.8
3,736,578	+				-0.2
3,736,579	-				-0.1
3,736,579	-				-0.4
3,736,617	-				+0.3
3,736,664	+				+0.9
3,736,686	+				+0.6
3,736,687	-				+1.0
3,736,754	+		DZA65_RS17330	0.11	+0.2
3,736,754	+		DZA65_RS17330	0.11	-1.9
3,736,754	+		DZA65_RS17330	0.11	-0.1
3,736,755	-		DZA65_RS17330	0.11	-1.7
3,736,755	-		DZA65_RS17330	0.11	+1.2
3,736,762	+				+1.1