Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17245

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS17240 and DZA65_RS17245 are separated by 52 nucleotidesDZA65_RS17245 and DZA65_RS17250 are separated by 118 nucleotidesDZA65_RS17250 and DZA65_RS17255 overlap by 47 nucleotides DZA65_RS17240: DZA65_RS17240 - class 1b ribonucleoside-diphosphate reductase subunit beta, at 3,719,926 to 3,720,888 _RS17240 DZA65_RS17245: DZA65_RS17245 - tRNA-Asp, at 3,720,941 to 3,721,017 _RS17245 DZA65_RS17250: DZA65_RS17250 - DNA polymerase III subunit epsilon, at 3,721,136 to 3,721,870 _RS17250 DZA65_RS17255: DZA65_RS17255 - ribonuclease HI, at 3,721,824 to 3,722,390 _RS17255 Position (kb) 3720 3721 3722Strain fitness (log2 ratio) -2 -1 0 1 2at 3720.051 kb on + strand, within DZA65_RS17240at 3720.051 kb on + strand, within DZA65_RS17240at 3720.052 kb on - strand, within DZA65_RS17240at 3720.109 kb on - strand, within DZA65_RS17240at 3720.142 kb on - strand, within DZA65_RS17240at 3720.208 kb on - strand, within DZA65_RS17240at 3720.217 kb on - strand, within DZA65_RS17240at 3720.241 kb on + strand, within DZA65_RS17240at 3720.241 kb on + strand, within DZA65_RS17240at 3720.241 kb on + strand, within DZA65_RS17240at 3720.241 kb on + strand, within DZA65_RS17240at 3720.242 kb on - strand, within DZA65_RS17240at 3720.242 kb on - strand, within DZA65_RS17240at 3720.242 kb on - strand, within DZA65_RS17240at 3720.242 kb on - strandat 3720.242 kb on - strand, within DZA65_RS17240at 3720.293 kb on - strand, within DZA65_RS17240at 3720.293 kb on - strand, within DZA65_RS17240at 3720.293 kb on - strand, within DZA65_RS17240at 3720.294 kb on + strand, within DZA65_RS17240at 3720.294 kb on + strand, within DZA65_RS17240at 3720.294 kb on + strand, within DZA65_RS17240at 3720.295 kb on - strand, within DZA65_RS17240at 3720.295 kb on - strand, within DZA65_RS17240at 3720.352 kb on + strand, within DZA65_RS17240at 3720.416 kb on - strand, within DZA65_RS17240at 3720.427 kb on + strand, within DZA65_RS17240at 3720.428 kb on - strand, within DZA65_RS17240at 3720.439 kb on + strand, within DZA65_RS17240at 3720.440 kb on - strand, within DZA65_RS17240at 3720.517 kb on + strand, within DZA65_RS17240at 3720.517 kb on + strand, within DZA65_RS17240at 3720.518 kb on - strand, within DZA65_RS17240at 3720.520 kb on + strand, within DZA65_RS17240at 3720.520 kb on + strand, within DZA65_RS17240at 3720.520 kb on + strand, within DZA65_RS17240at 3720.520 kb on + strand, within DZA65_RS17240at 3720.520 kb on + strand, within DZA65_RS17240at 3720.520 kb on + strand, within DZA65_RS17240at 3720.520 kb on + strand, within DZA65_RS17240at 3720.520 kb on + strand, within DZA65_RS17240at 3720.521 kb on - strand, within DZA65_RS17240at 3720.521 kb on - strand, within DZA65_RS17240at 3720.521 kb on - strand, within DZA65_RS17240at 3720.521 kb on - strand, within DZA65_RS17240at 3720.521 kb on - strand, within DZA65_RS17240at 3720.521 kb on - strand, within DZA65_RS17240at 3720.521 kb on - strand, within DZA65_RS17240at 3720.521 kb on - strand, within DZA65_RS17240at 3720.535 kb on + strand, within DZA65_RS17240at 3720.535 kb on + strand, within DZA65_RS17240at 3720.535 kb on + strand, within DZA65_RS17240at 3720.536 kb on - strand, within DZA65_RS17240at 3720.536 kb on - strand, within DZA65_RS17240at 3720.616 kb on + strand, within DZA65_RS17240at 3720.617 kb on - strand, within DZA65_RS17240at 3720.635 kb on - strand, within DZA65_RS17240at 3720.649 kb on + strand, within DZA65_RS17240at 3720.650 kb on - strand, within DZA65_RS17240at 3720.650 kb on - strand, within DZA65_RS17240at 3720.650 kb on - strand, within DZA65_RS17240at 3720.650 kb on - strand, within DZA65_RS17240at 3720.650 kb on - strand, within DZA65_RS17240at 3720.677 kb on + strand, within DZA65_RS17240at 3720.677 kb on + strand, within DZA65_RS17240at 3720.678 kb on - strand, within DZA65_RS17240at 3720.678 kb on - strand, within DZA65_RS17240at 3720.678 kb on - strand, within DZA65_RS17240at 3720.678 kb on - strand, within DZA65_RS17240at 3720.678 kb on - strand, within DZA65_RS17240at 3720.678 kb on - strand, within DZA65_RS17240at 3720.694 kb on + strand, within DZA65_RS17240at 3720.694 kb on + strand, within DZA65_RS17240at 3720.695 kb on - strand, within DZA65_RS17240at 3720.695 kb on - strand, within DZA65_RS17240at 3720.695 kb on - strand, within DZA65_RS17240at 3720.695 kb on - strand, within DZA65_RS17240at 3720.695 kb on - strand, within DZA65_RS17240at 3720.695 kb on - strand, within DZA65_RS17240at 3720.695 kb on - strand, within DZA65_RS17240at 3720.696 kb on + strand, within DZA65_RS17240at 3720.696 kb on + strand, within DZA65_RS17240at 3720.696 kb on + strand, within DZA65_RS17240at 3720.696 kb on + strand, within DZA65_RS17240at 3720.696 kb on + strand, within DZA65_RS17240at 3720.696 kb on + strand, within DZA65_RS17240at 3720.696 kb on + strand, within DZA65_RS17240at 3720.697 kb on - strand, within DZA65_RS17240at 3720.697 kb on - strand, within DZA65_RS17240at 3720.697 kb on - strand, within DZA65_RS17240at 3720.697 kb on - strand, within DZA65_RS17240at 3720.697 kb on - strand, within DZA65_RS17240at 3720.697 kb on - strand, within DZA65_RS17240at 3720.697 kb on - strand, within DZA65_RS17240at 3720.697 kb on - strand, within DZA65_RS17240at 3720.737 kb on + strand, within DZA65_RS17240at 3720.738 kb on - strand, within DZA65_RS17240at 3720.838 kb on + strandat 3720.838 kb on + strandat 3720.838 kb on + strandat 3720.838 kb on + strandat 3720.838 kb on + strandat 3720.838 kb on + strandat 3720.838 kb on + strandat 3720.838 kb on + strandat 3720.839 kb on - strandat 3720.839 kb on - strandat 3720.839 kb on - strandat 3720.839 kb on - strandat 3720.839 kb on - strandat 3720.996 kb on + strand, within DZA65_RS17245at 3721.009 kb on + strand, within DZA65_RS17245at 3721.032 kb on + strandat 3721.032 kb on + strandat 3721.032 kb on + strandat 3721.032 kb on + strandat 3721.032 kb on + strandat 3721.032 kb on + strandat 3721.032 kb on + strandat 3721.033 kb on - strandat 3721.033 kb on - strandat 3721.033 kb on - strandat 3721.033 kb on - strandat 3721.033 kb on - strandat 3721.067 kb on + strandat 3721.068 kb on - strandat 3721.091 kb on + strandat 3721.856 kb on - strandat 3721.882 kb on - strand, within DZA65_RS17255at 3721.895 kb on - strand, within DZA65_RS17255at 3721.910 kb on + strand, within DZA65_RS17255at 3721.918 kb on + strand, within DZA65_RS17255at 3721.919 kb on - strand, within DZA65_RS17255

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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3,720,051 + DZA65_RS17240 0.13 -0.0
3,720,051 + DZA65_RS17240 0.13 -0.0
3,720,052 - DZA65_RS17240 0.13 +0.4
3,720,109 - DZA65_RS17240 0.19 -2.5
3,720,142 - DZA65_RS17240 0.22 -0.5
3,720,208 - DZA65_RS17240 0.29 +0.4
3,720,217 - DZA65_RS17240 0.30 +0.2
3,720,241 + DZA65_RS17240 0.33 -0.5
3,720,241 + DZA65_RS17240 0.33 +0.7
3,720,241 + DZA65_RS17240 0.33 +0.8
3,720,241 + DZA65_RS17240 0.33 -0.7
3,720,242 - DZA65_RS17240 0.33 -0.5
3,720,242 - DZA65_RS17240 0.33 +1.6
3,720,242 - DZA65_RS17240 0.33 -1.2
3,720,242 - +1.3
3,720,242 - DZA65_RS17240 0.33 +0.9
3,720,293 - DZA65_RS17240 0.38 +0.1
3,720,293 - DZA65_RS17240 0.38 +2.3
3,720,293 - DZA65_RS17240 0.38 +0.5
3,720,294 + DZA65_RS17240 0.38 -0.4
3,720,294 + DZA65_RS17240 0.38 +0.8
3,720,294 + DZA65_RS17240 0.38 -2.0
3,720,295 - DZA65_RS17240 0.38 -0.3
3,720,295 - DZA65_RS17240 0.38 +0.5
3,720,352 + DZA65_RS17240 0.44 +0.2
3,720,416 - DZA65_RS17240 0.51 -1.6
3,720,427 + DZA65_RS17240 0.52 -0.9
3,720,428 - DZA65_RS17240 0.52 -1.2
3,720,439 + DZA65_RS17240 0.53 +0.7
3,720,440 - DZA65_RS17240 0.53 +0.6
3,720,517 + DZA65_RS17240 0.61 +1.6
3,720,517 + DZA65_RS17240 0.61 +0.9
3,720,518 - DZA65_RS17240 0.61 +0.3
3,720,520 + DZA65_RS17240 0.62 -0.8
3,720,520 + DZA65_RS17240 0.62 -0.6
3,720,520 + DZA65_RS17240 0.62 +0.7
3,720,520 + DZA65_RS17240 0.62 +0.0
3,720,520 + DZA65_RS17240 0.62 -1.1
3,720,520 + DZA65_RS17240 0.62 +0.2
3,720,520 + DZA65_RS17240 0.62 -0.8
3,720,520 + DZA65_RS17240 0.62 +0.8
3,720,521 - DZA65_RS17240 0.62 -1.0
3,720,521 - DZA65_RS17240 0.62 +0.0
3,720,521 - DZA65_RS17240 0.62 -0.1
3,720,521 - DZA65_RS17240 0.62 +0.6
3,720,521 - DZA65_RS17240 0.62 +0.8
3,720,521 - DZA65_RS17240 0.62 -0.4
3,720,521 - DZA65_RS17240 0.62 +0.5
3,720,521 - DZA65_RS17240 0.62 -0.2
3,720,535 + DZA65_RS17240 0.63 +0.2
3,720,535 + DZA65_RS17240 0.63 -0.0
3,720,535 + DZA65_RS17240 0.63 +1.2
3,720,536 - DZA65_RS17240 0.63 -0.2
3,720,536 - DZA65_RS17240 0.63 +0.4
3,720,616 + DZA65_RS17240 0.72 -0.7
3,720,617 - DZA65_RS17240 0.72 +0.5
3,720,635 - DZA65_RS17240 0.74 +1.0
3,720,649 + DZA65_RS17240 0.75 -0.5
3,720,650 - DZA65_RS17240 0.75 +0.3
3,720,650 - DZA65_RS17240 0.75 -0.2
3,720,650 - DZA65_RS17240 0.75 +0.2
3,720,650 - DZA65_RS17240 0.75 +0.2
3,720,650 - DZA65_RS17240 0.75 -0.1
3,720,677 + DZA65_RS17240 0.78 +0.9
3,720,677 + DZA65_RS17240 0.78 +1.3
3,720,678 - DZA65_RS17240 0.78 +0.7
3,720,678 - DZA65_RS17240 0.78 +0.8
3,720,678 - DZA65_RS17240 0.78 +0.1
3,720,678 - DZA65_RS17240 0.78 +0.6
3,720,678 - DZA65_RS17240 0.78 +1.2
3,720,678 - DZA65_RS17240 0.78 -0.0
3,720,694 + DZA65_RS17240 0.80 +1.2
3,720,694 + DZA65_RS17240 0.80 -1.1
3,720,695 - DZA65_RS17240 0.80 +1.0
3,720,695 - DZA65_RS17240 0.80 -0.3
3,720,695 - DZA65_RS17240 0.80 -0.2
3,720,695 - DZA65_RS17240 0.80 -1.5
3,720,695 - DZA65_RS17240 0.80 +0.3
3,720,695 - DZA65_RS17240 0.80 +0.1
3,720,695 - DZA65_RS17240 0.80 +0.2
3,720,696 + DZA65_RS17240 0.80 +2.3
3,720,696 + DZA65_RS17240 0.80 -0.3
3,720,696 + DZA65_RS17240 0.80 -2.7
3,720,696 + DZA65_RS17240 0.80 +0.5
3,720,696 + DZA65_RS17240 0.80 -0.1
3,720,696 + DZA65_RS17240 0.80 -1.9
3,720,696 + DZA65_RS17240 0.80 -1.8
3,720,697 - DZA65_RS17240 0.80 +1.3
3,720,697 - DZA65_RS17240 0.80 -0.1
3,720,697 - DZA65_RS17240 0.80 -0.7
3,720,697 - DZA65_RS17240 0.80 -0.5
3,720,697 - DZA65_RS17240 0.80 -0.2
3,720,697 - DZA65_RS17240 0.80 -0.2
3,720,697 - DZA65_RS17240 0.80 +0.1
3,720,697 - DZA65_RS17240 0.80 +0.0
3,720,737 + DZA65_RS17240 0.84 -0.1
3,720,738 - DZA65_RS17240 0.84 -0.4
3,720,838 + +1.1
3,720,838 + +0.5
3,720,838 + -0.0
3,720,838 + -0.1
3,720,838 + -1.5
3,720,838 + +0.3
3,720,838 + +0.2
3,720,838 + -0.8
3,720,839 - -0.2
3,720,839 - +0.0
3,720,839 - +2.3
3,720,839 - +0.9
3,720,839 - +0.1
3,720,996 + DZA65_RS17245 0.71 -1.2
3,721,009 + DZA65_RS17245 0.88 -1.5
3,721,032 + -1.7
3,721,032 + -0.3
3,721,032 + -1.2
3,721,032 + -0.1
3,721,032 + -0.3
3,721,032 + +1.8
3,721,032 + +0.6
3,721,033 - +0.8
3,721,033 - -0.7
3,721,033 - +1.0
3,721,033 - -2.2
3,721,033 - -0.3
3,721,067 + +0.1
3,721,068 - +0.5
3,721,091 + -1.4
3,721,856 - +0.6
3,721,882 - DZA65_RS17255 0.10 +0.7
3,721,895 - DZA65_RS17255 0.13 -0.7
3,721,910 + DZA65_RS17255 0.15 -0.8
3,721,918 + DZA65_RS17255 0.17 -0.2
3,721,919 - DZA65_RS17255 0.17 +0.9

Or see this region's nucleotide sequence