Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17125

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,699,469	+		DZA65_RS17120	0.70	+0.5
3,699,482	+		DZA65_RS17120	0.71	-1.5
3,699,513	+		DZA65_RS17120	0.72	-1.5
3,699,514	-		DZA65_RS17120	0.72	-1.0
3,699,646	+		DZA65_RS17120	0.77	+0.3
3,699,647	-		DZA65_RS17120	0.77	+0.8
3,699,702	+		DZA65_RS17120	0.80	+0.1
3,699,702	+		DZA65_RS17120	0.80	+1.5
3,699,702	+		DZA65_RS17120	0.80	+1.3
3,699,703	-		DZA65_RS17120	0.80	+0.3
3,699,705	+		DZA65_RS17120	0.80	+0.5
3,699,706	-		DZA65_RS17120	0.80	+1.7
3,699,706	-		DZA65_RS17120	0.80	+3.5
3,699,706	-		DZA65_RS17120	0.80	+0.3
3,700,049	+				-1.6
3,700,049	+				-2.0
3,700,049	+				-0.7
3,700,049	+				+0.2
3,700,050	-				-1.7
3,700,052	+				+0.1
3,700,052	+				-0.1
3,700,052	+				-0.4
3,700,052	+				-1.7
3,700,053	-				+1.1
3,700,053	-				+1.0
3,700,053	-				+1.0
3,700,053	-				+1.1
3,700,053	-				-0.1
3,700,197	+				-1.6
3,700,198	-				+0.9
3,700,217	+				-0.1
3,700,277	+				-0.9
3,700,278	-				+0.6
3,700,281	+				-0.6
3,700,281	+				+0.6
3,700,282	-				+1.5
3,700,282	-				-1.0
3,700,282	-				+0.1
3,700,282	-				+1.1
3,700,282	-				+0.3
3,700,290	+				-0.1
3,700,290	+				-0.1
3,700,290	+				+0.3
3,700,291	-				-0.6
3,700,291	-				+1.3
3,700,291	-				-0.4
3,700,291	-				+0.6
3,700,298	+				+1.7
3,700,298	+				-0.2
3,700,298	+				+0.2
3,700,298	+				-0.3
3,700,298	+				+0.2
3,700,299	-				+0.3
3,700,299	-				+0.9
3,700,303	-				+0.9
3,700,303	-				-2.0
3,700,303	-				+2.8
3,700,303	-				+0.7
3,700,358	+				+1.2
3,700,378	+				+1.0
3,700,378	+				-2.1
3,700,379	-				+1.3
3,700,379	-				+0.2
3,700,379	-				+0.6
3,700,379	-				+0.4
3,700,384	+				+0.4
3,700,384	+				-0.8
3,700,384	+				-0.8
3,700,384	+				-1.3
3,700,384	+				-1.7
3,700,384	+				+0.3
3,700,385	-				+0.4
3,700,385	-				-0.1
3,700,388	+				-1.1
3,700,388	+				-2.0
3,700,389	-				-0.0
3,700,389	-				+0.2
3,700,400	+				-0.4
3,700,400	+				-0.3
3,700,400	+				-1.1
3,700,400	+				+0.6
3,700,400	+				-0.1
3,700,400	+				-1.3
3,700,401	-				+1.5
3,700,401	-				-0.5
3,700,401	-				+0.6
3,700,401	-				-0.0
3,700,401	-				-1.1
3,700,498	+		DZA65_RS17125	0.12	+0.5
3,700,498	+		DZA65_RS17125	0.12	+0.3
3,700,498	+		DZA65_RS17125	0.12	+0.1
3,700,498	+		DZA65_RS17125	0.12	-0.1
3,700,498	+		DZA65_RS17125	0.12	+0.3
3,700,498	+		DZA65_RS17125	0.12	-0.1
3,700,498	+		DZA65_RS17125	0.12	+0.1
3,700,499	-		DZA65_RS17125	0.12	+1.9
3,700,499	-				+3.1
3,700,499	-		DZA65_RS17125	0.12	+1.3
3,700,499	-		DZA65_RS17125	0.12	+1.2
3,700,649	+		DZA65_RS17125	0.40	-0.9
3,700,649	+		DZA65_RS17125	0.40	-0.4
3,700,650	-		DZA65_RS17125	0.40	+1.4
3,700,656	-		DZA65_RS17125	0.42	-1.5
3,700,745	+		DZA65_RS17125	0.58	-0.0
3,700,746	-		DZA65_RS17125	0.58	+1.4
3,700,746	-		DZA65_RS17125	0.58	+0.3
3,700,746	-		DZA65_RS17125	0.58	-0.1
3,700,751	-		DZA65_RS17125	0.59	+0.7
3,700,780	-		DZA65_RS17125	0.65	+2.8
3,700,808	+		DZA65_RS17125	0.70	-0.3
3,700,809	-		DZA65_RS17125	0.70	+0.0
3,700,809	-		DZA65_RS17125	0.70	+1.5
3,700,894	+		DZA65_RS17125	0.86	+0.5
3,700,895	-		DZA65_RS17125	0.86	+1.2
3,700,896	+		DZA65_RS17125	0.87	+0.5
3,700,975	+				+0.5
3,700,975	+				+0.1
3,700,975	+				-0.3
3,700,975	+				-0.9
3,700,975	+				+1.0
3,700,975	+				-0.3
3,700,975	+				-0.7
3,700,975	+				-0.2
3,700,976	-				+1.3
3,700,976	-				-0.7
3,700,976	-				-0.0
3,700,976	-				-0.8
3,700,976	-				+0.4
3,700,976	-				+1.5
3,701,025	+				-0.4
3,701,025	+				-1.4
3,701,025	+				-2.0
3,701,026	-				-0.0
3,701,026	-				+0.8
3,701,137	-		DZA65_RS17130	0.22	-0.1
3,701,137	-		DZA65_RS17130	0.22	+0.9
3,701,137	-		DZA65_RS17130	0.22	+1.2
3,701,166	+		DZA65_RS17130	0.26	+1.0
3,701,167	-		DZA65_RS17130	0.26	-1.3
3,701,167	-		DZA65_RS17130	0.26	+0.4
3,701,174	+		DZA65_RS17130	0.27	-0.1
3,701,175	-		DZA65_RS17130	0.27	-1.0
3,701,219	-		DZA65_RS17130	0.33	+1.5
3,701,219	-		DZA65_RS17130	0.33	-0.9
3,701,219	-		DZA65_RS17130	0.33	+1.2
3,701,223	-		DZA65_RS17130	0.34	-1.4
3,701,289	+		DZA65_RS17130	0.43	-0.3
3,701,289	+		DZA65_RS17130	0.43	-2.1
3,701,290	-		DZA65_RS17130	0.43	+1.1
3,701,317	-		DZA65_RS17130	0.47	-1.4
3,701,339	-		DZA65_RS17130	0.50	-0.3
3,701,347	+		DZA65_RS17130	0.51	-0.4
3,701,347	+		DZA65_RS17130	0.51	+0.3
3,701,347	+		DZA65_RS17130	0.51	+1.7
3,701,348	-		DZA65_RS17130	0.51	-0.2
3,701,348	-		DZA65_RS17130	0.51	+0.9
3,701,348	-		DZA65_RS17130	0.51	+0.2
3,701,348	-		DZA65_RS17130	0.51	-0.7
3,701,350	+		DZA65_RS17130	0.51	-0.3
3,701,351	-		DZA65_RS17130	0.52	-0.7
3,701,376	+		DZA65_RS17130	0.55	+0.3
3,701,376	+		DZA65_RS17130	0.55	-0.1
3,701,376	+		DZA65_RS17130	0.55	-0.4
3,701,377	-		DZA65_RS17130	0.55	+1.5
3,701,378	+		DZA65_RS17130	0.55	-2.4
3,701,379	-		DZA65_RS17130	0.55	+0.0
3,701,379	-		DZA65_RS17130	0.55	-1.3
3,701,379	-		DZA65_RS17130	0.55	-0.3
3,701,401	+		DZA65_RS17130	0.58	-0.6
3,701,401	+		DZA65_RS17130	0.58	-0.1
3,701,421	+		DZA65_RS17130	0.61	-0.7
3,701,421	+		DZA65_RS17130	0.61	-2.1
3,701,421	+		DZA65_RS17130	0.61	-2.0
3,701,422	-		DZA65_RS17130	0.61	-0.5
3,701,503	+		DZA65_RS17130	0.73	-1.7
3,701,558	+		DZA65_RS17130	0.80	+0.3
3,701,558	+		DZA65_RS17130	0.80	+1.9
3,701,558	+		DZA65_RS17130	0.80	+1.2
3,701,558	+		DZA65_RS17130	0.80	+0.5
3,701,558	+		DZA65_RS17130	0.80	+2.1
3,701,558	+		DZA65_RS17130	0.80	+1.1
3,701,559	-		DZA65_RS17130	0.80	-1.8
3,701,559	-		DZA65_RS17130	0.80	-2.9
3,701,559	-		DZA65_RS17130	0.80	+1.3
3,701,559	-		DZA65_RS17130	0.80	-1.7
3,701,559	-		DZA65_RS17130	0.80	-0.0
3,701,559	-		DZA65_RS17130	0.80	+2.5
3,701,559	-		DZA65_RS17130	0.80	+0.0
3,701,559	-		DZA65_RS17130	0.80	-0.2
3,701,572	-		DZA65_RS17130	0.82	+1.8
3,701,581	+		DZA65_RS17130	0.83	-1.3
3,701,584	+		DZA65_RS17130	0.84	+0.6
3,701,584	+		DZA65_RS17130	0.84	+0.1
3,701,585	-		DZA65_RS17130	0.84	+0.2
3,701,585	-		DZA65_RS17130	0.84	-0.4
3,701,623	-		DZA65_RS17130	0.89	+2.3
3,701,623	-		DZA65_RS17130	0.89	+0.4
3,701,623	-		DZA65_RS17130	0.89	-0.3
3,701,633	+				+0.1
3,701,648	+				-0.9
3,701,649	-				-1.6
3,701,649	-				+1.7
3,701,656	+				-0.5
3,701,657	-				-0.2
3,701,657	-				-1.3
3,701,669	-				-0.4
3,701,679	-				-0.4
3,701,697	+				+0.7
3,701,698	-				+0.4
3,701,698	-				+0.9
3,701,698	-				-1.1
3,701,713	+				-0.3
3,701,713	+				+0.9
3,701,713	+				-1.3
3,701,713	+				-0.0
3,701,713	+				+1.1
3,701,714	-				+0.5
3,701,714	-				+0.3
3,701,714	-				-0.2
3,701,717	+				-1.4
3,701,718	-				-0.5
3,701,718	-				+0.3
3,701,718	-				+0.0
3,701,718	-				+0.3
3,701,720	+				+0.2
3,701,720	+				+0.2
3,701,720	+				-0.2
3,701,720	+				-0.4
3,701,720	+				-0.3
3,701,721	-				-0.3
3,701,721	-				+0.1
3,701,721	-				-1.5
3,701,721	-				-0.7
3,701,721	-				-0.1
3,701,721	-				-0.0
3,701,733	+				-0.1
3,701,733	+				-0.1
3,701,734	-				+0.6
3,701,734	-				-0.2
3,701,734	-				-1.0
3,701,784	+				-0.0
3,701,784	+				-1.3
3,701,798	+				-0.7
3,701,798	+				-0.8
3,701,799	-				-3.7
3,701,802	+				-0.1
3,701,804	+				-0.1
3,701,804	+				+0.5
3,701,855	+				+0.8
3,701,855	+				-0.8
3,701,855	+				-0.8
3,701,855	+				+0.7
3,701,859	+				-0.0
3,701,859	+				-2.7