Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16955

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,662,038	+				+0.3
3,662,038	+				+1.5
3,662,038	+				-0.3
3,662,039	-				-0.5
3,662,039	-				-0.4
3,662,044	-				-0.1
3,662,084	+				+0.1
3,662,084	+				+0.2
3,662,085	-				-0.1
3,662,137	+				+0.2
3,662,137	+				-0.0
3,662,137	+				-1.7
3,662,137	+				-0.5
3,662,137	+				-0.3
3,662,137	+				+0.5
3,662,137	+				-0.6
3,662,137	+				+0.5
3,662,137	+				+1.0
3,662,138	-				+0.8
3,662,138	-				+1.6
3,662,138	-				+0.2
3,662,138	-				+0.4
3,662,186	+				+0.3
3,662,186	+				-0.8
3,662,187	-				+1.9
3,662,200	-				-0.4
3,662,205	+				+0.7
3,662,205	+				-0.4
3,662,206	-				-1.0
3,662,206	-				-0.0
3,662,261	+		DZA65_RS16950	0.20	-0.2
3,662,262	-		DZA65_RS16950	0.20	-0.4
3,662,291	+		DZA65_RS16950	0.28	+0.3
3,662,292	-		DZA65_RS16950	0.28	+0.3
3,662,307	+		DZA65_RS16950	0.32	+1.1
3,662,374	+		DZA65_RS16950	0.49	-0.3
3,662,374	+		DZA65_RS16950	0.49	-0.8
3,662,374	+		DZA65_RS16950	0.49	-0.3
3,662,374	+		DZA65_RS16950	0.49	-2.3
3,662,375	-		DZA65_RS16950	0.49	-0.1
3,662,375	-		DZA65_RS16950	0.49	-0.7
3,662,375	-		DZA65_RS16950	0.49	-1.3
3,662,375	-		DZA65_RS16950	0.49	-0.1
3,662,473	+		DZA65_RS16950	0.75	-2.0
3,662,473	+		DZA65_RS16950	0.75	-1.1
3,662,473	+		DZA65_RS16950	0.75	-0.8
3,662,473	+		DZA65_RS16950	0.75	+0.4
3,662,473	+		DZA65_RS16950	0.75	-1.6
3,662,473	+		DZA65_RS16950	0.75	+0.8
3,662,474	-		DZA65_RS16950	0.75	-0.4
3,662,474	-		DZA65_RS16950	0.75	+0.2
3,662,474	-		DZA65_RS16950	0.75	-0.3
3,662,474	-		DZA65_RS16950	0.75	-0.0
3,662,474	-		DZA65_RS16950	0.75	-0.7
3,662,520	+		DZA65_RS16950	0.87	+0.5
3,662,535	+				-0.7
3,662,535	+				-0.0
3,662,536	-				+0.3
3,662,536	-				+0.6
3,662,557	-				+0.2
3,662,563	-				-1.3
3,662,593	+				-1.6
3,662,594	-				+0.7
3,662,594	-				+0.6
3,662,680	+				+0.2
3,662,680	+				-0.0
3,662,680	+				+0.5
3,662,681	-				+1.4
3,662,681	-				-0.2
3,662,681	-				-0.4
3,662,683	-				+0.1
3,662,683	-				+0.3
3,662,713	-				-0.0
3,662,893	+				+0.1
3,662,910	+				-3.6
3,662,910	+				+0.3
3,662,911	-				+1.0
3,662,911	-				-0.8
3,662,937	+				-0.8
3,662,937	+				-0.4
3,662,937	+				-0.1
3,662,974	-				+0.1
3,662,978	+				-0.0
3,662,990	+				-0.2
3,662,995	+				-1.0
3,662,995	+				+0.8
3,662,996	-				-0.5
3,663,069	+				-0.7
3,663,070	-				+0.2
3,663,080	+				+0.1
3,663,080	+				+1.9
3,663,081	-				-0.5
3,663,081	-				+1.0
3,663,081	-				-0.9
3,663,107	+		DZA65_RS16955	0.13	-0.7
3,663,107	+		DZA65_RS16955	0.13	-0.4
3,663,107	+		DZA65_RS16955	0.13	-2.3
3,663,108	-		DZA65_RS16955	0.14	-1.4
3,663,126	+		DZA65_RS16955	0.16	+0.7
3,663,126	+		DZA65_RS16955	0.16	-0.3
3,663,127	-		DZA65_RS16955	0.16	-0.8
3,663,127	-		DZA65_RS16955	0.16	+0.3
3,663,127	-		DZA65_RS16955	0.16	-1.6
3,663,287	+		DZA65_RS16955	0.40	-0.1
3,663,287	+		DZA65_RS16955	0.40	-0.2
3,663,288	-		DZA65_RS16955	0.40	-1.0
3,663,288	-		DZA65_RS16955	0.40	-0.2
3,663,291	+		DZA65_RS16955	0.40	-1.0
3,663,291	+		DZA65_RS16955	0.40	-2.3
3,663,291	+		DZA65_RS16955	0.40	+0.9
3,663,291	+		DZA65_RS16955	0.40	+0.7
3,663,291	+		DZA65_RS16955	0.40	-0.0
3,663,292	-		DZA65_RS16955	0.40	-0.0
3,663,292	-		DZA65_RS16955	0.40	-2.7
3,663,292	-		DZA65_RS16955	0.40	+0.3
3,663,311	+		DZA65_RS16955	0.43	-0.7
3,663,493	+		DZA65_RS16955	0.70	+1.3
3,663,493	+		DZA65_RS16955	0.70	+0.1
3,663,493	+		DZA65_RS16955	0.70	-1.3
3,663,493	+		DZA65_RS16955	0.70	-1.0
3,663,493	+		DZA65_RS16955	0.70	+0.5
3,663,493	+		DZA65_RS16955	0.70	-0.3
3,663,493	+				+2.6
3,663,493	+		DZA65_RS16955	0.70	+0.1
3,663,493	+		DZA65_RS16955	0.70	-1.0
3,663,493	+		DZA65_RS16955	0.70	-1.1
3,663,493	+		DZA65_RS16955	0.70	-0.1
3,663,493	+		DZA65_RS16955	0.70	-0.8
3,663,493	+		DZA65_RS16955	0.70	-0.7
3,663,494	-		DZA65_RS16955	0.70	-2.0
3,663,494	-		DZA65_RS16955	0.70	-1.7
3,663,494	-		DZA65_RS16955	0.70	-1.7
3,663,494	-		DZA65_RS16955	0.70	-1.5
3,663,494	-		DZA65_RS16955	0.70	-0.2
3,663,494	-		DZA65_RS16955	0.70	+1.1
3,663,494	-		DZA65_RS16955	0.70	+0.4
3,663,494	-		DZA65_RS16955	0.70	-0.3
3,663,542	+		DZA65_RS16955	0.77	-0.5
3,663,542	+		DZA65_RS16955	0.77	+0.7
3,663,659	+				-0.9
3,663,659	+				+0.2
3,663,699	+				-2.0
3,663,699	+				-0.2
3,663,699	+				-0.6
3,663,699	+				-0.3
3,663,702	+				-3.5
3,663,703	-				+0.2
3,663,768	+				-0.5
3,663,768	+				-0.9
3,663,768	+				-0.7
3,663,768	+				+0.6
3,663,768	+				-0.7
3,663,769	-				-0.5
3,663,781	+				+1.3
3,663,801	+				+0.3
3,663,801	+				+0.6
3,663,802	-				+0.4
3,663,853	+		DZA65_RS16960	0.12	-1.9
3,663,854	-		DZA65_RS16960	0.13	-0.7
3,663,911	+		DZA65_RS16960	0.88	-2.1
3,663,911	+		DZA65_RS16960	0.88	-3.3
3,663,911	+		DZA65_RS16960	0.88	-3.0
3,663,911	+		DZA65_RS16960	0.88	-3.1
3,663,912	-				-0.1
3,663,912	-				-1.3
3,663,912	-				-0.8
3,663,912	-				-1.3
3,663,912	-				-0.7
3,663,912	-				-0.1
3,663,929	-				+0.0
3,663,929	-				+1.9
3,663,931	+				-0.7
3,663,931	+				+0.3
3,663,931	+				-3.0
3,663,931	+				+0.3
3,663,931	+				-1.9
3,663,932	-				-0.3
3,663,932	-				-0.5
3,663,932	-				-1.0
3,663,932	-				-0.9
3,663,932	-				-0.2
3,663,950	+				-0.2
3,663,950	+				-2.0
3,663,951	-				+0.4
3,663,951	-				-0.0
3,663,951	-				-2.7
3,663,951	-				-0.5
3,663,951	-				+0.5
3,663,951	-				-2.0
3,663,951	-				-0.2
3,663,977	-		DZA65_RS16965	0.13	+0.3
3,663,977	-		DZA65_RS16965	0.13	-1.0
3,664,034	+		DZA65_RS16965	0.88	-1.7
3,664,056	-				+0.7
3,664,056	-				-0.1
3,664,056	-				-2.3
3,664,079	-				-0.5
3,664,149	+				+1.2
3,664,149	+				-1.0
3,664,182	+				+0.3
3,664,194	+				+0.1
3,664,208	-				-0.8
3,664,210	+				+2.0
3,664,210	+				-2.0
3,664,211	-				+0.6
3,664,211	-				-0.1
3,664,231	-				+0.5
3,664,231	-				+0.1
3,664,231	-				-2.1
3,664,235	+				-0.7
3,664,236	-				-0.3
3,664,236	-				+0.1
3,664,292	+				-0.0
3,664,293	-				-1.3
3,664,293	-				-0.2
3,664,294	+				+0.3
3,664,294	+				+0.3
3,664,294	+				+0.6
3,664,294	+				+1.0
3,664,295	-				-0.3
3,664,295	-				-2.5
3,664,295	-				+0.4
3,664,295	-				-0.1
3,664,295	-				+0.5
3,664,295	-				-0.8
3,664,295	-				-0.7
3,664,301	+				-0.5
3,664,301	+				-2.0
3,664,302	-				-0.6
3,664,302	-				-1.1
3,664,302	-				-0.6
3,664,302	-				-1.1
3,664,358	+				-0.5
3,664,390	+				-0.9
3,664,398	+				+0.2
3,664,447	+				-2.5
3,664,447	+				-0.0
3,664,448	-				+0.0
3,664,448	-				-1.3
3,664,469	+		DZA65_RS16970	0.12	+2.3
3,664,472	+		DZA65_RS16970	0.12	+0.2
3,664,472	+		DZA65_RS16970	0.12	-1.1
3,664,472	+		DZA65_RS16970	0.12	+0.7
3,664,472	+		DZA65_RS16970	0.12	-1.0
3,664,472	+		DZA65_RS16970	0.12	-0.4
3,664,472	+		DZA65_RS16970	0.12	-0.7
3,664,472	+		DZA65_RS16970	0.12	-1.3
3,664,472	+		DZA65_RS16970	0.12	+0.1
3,664,472	+		DZA65_RS16970	0.12	-0.1
3,664,472	+		DZA65_RS16970	0.12	-0.6
3,664,473	-		DZA65_RS16970	0.12	-1.9
3,664,473	-		DZA65_RS16970	0.12	+0.2
3,664,473	-		DZA65_RS16970	0.12	-1.0
3,664,476	+		DZA65_RS16970	0.12	-2.9
3,664,476	+		DZA65_RS16970	0.12	-0.2
3,664,476	+		DZA65_RS16970	0.12	+1.3
3,664,476	+		DZA65_RS16970	0.12	-2.3
3,664,476	+		DZA65_RS16970	0.12	+0.8
3,664,476	+		DZA65_RS16970	0.12	-0.3
3,664,476	+		DZA65_RS16970	0.12	-0.1
3,664,476	+		DZA65_RS16970	0.12	-0.7
3,664,477	-		DZA65_RS16970	0.12	-0.4
3,664,477	-		DZA65_RS16970	0.12	-0.7
3,664,477	-		DZA65_RS16970	0.12	+1.2
3,664,477	-		DZA65_RS16970	0.12	-0.3
3,664,477	-		DZA65_RS16970	0.12	-0.5
3,664,477	-		DZA65_RS16970	0.12	-2.4
3,664,477	-		DZA65_RS16970	0.12	-0.9
3,664,477	-		DZA65_RS16970	0.12	+0.7
3,664,477	-		DZA65_RS16970	0.12	+0.6
3,664,477	-		DZA65_RS16970	0.12	+1.0
3,664,477	-		DZA65_RS16970	0.12	+2.0
3,664,477	-		DZA65_RS16970	0.12	+0.6
3,664,477	-		DZA65_RS16970	0.12	-0.2
3,664,477	-		DZA65_RS16970	0.12	+0.7
3,664,477	-		DZA65_RS16970	0.12	+0.0
3,664,477	-		DZA65_RS16970	0.12	-0.2
3,664,487	+		DZA65_RS16970	0.13	-0.3
3,664,487	+		DZA65_RS16970	0.13	+0.8
3,664,488	-		DZA65_RS16970	0.13	+0.1
3,664,488	-		DZA65_RS16970	0.13	+0.3
3,664,541	+		DZA65_RS16970	0.17	+0.9
3,664,579	+		DZA65_RS16970	0.20	+1.3
3,664,580	-		DZA65_RS16970	0.20	-0.7
3,664,585	-		DZA65_RS16970	0.21	+0.4
3,664,585	-		DZA65_RS16970	0.21	+0.3
3,664,585	-		DZA65_RS16970	0.21	+0.3
3,664,585	-		DZA65_RS16970	0.21	-0.3
3,664,619	+		DZA65_RS16970	0.23	+0.9
3,664,619	+		DZA65_RS16970	0.23	-2.0
3,664,620	-		DZA65_RS16970	0.23	-0.4
3,664,620	-		DZA65_RS16970	0.23	+0.4
3,664,639	+		DZA65_RS16970	0.25	+1.1
3,664,639	+		DZA65_RS16970	0.25	+0.1
3,664,639	+		DZA65_RS16970	0.25	+0.5
3,664,639	+		DZA65_RS16970	0.25	+0.8
3,664,639	+		DZA65_RS16970	0.25	-0.7
3,664,639	+		DZA65_RS16970	0.25	+0.3
3,664,639	+		DZA65_RS16970	0.25	+1.2
3,664,639	+		DZA65_RS16970	0.25	+0.3
3,664,639	+		DZA65_RS16970	0.25	-1.3
3,664,639	+				+2.2
3,664,639	+		DZA65_RS16970	0.25	-0.8
3,664,639	+		DZA65_RS16970	0.25	-1.3
3,664,639	+		DZA65_RS16970	0.25	-1.9
3,664,639	+		DZA65_RS16970	0.25	-0.5
3,664,639	+		DZA65_RS16970	0.25	+1.0
3,664,639	+				-0.1
3,664,639	+		DZA65_RS16970	0.25	-1.0
3,664,639	+		DZA65_RS16970	0.25	+0.1
3,664,640	-		DZA65_RS16970	0.25	-0.7
3,664,640	-		DZA65_RS16970	0.25	-0.6
3,664,640	-				+1.3
3,664,640	-		DZA65_RS16970	0.25	-0.6
3,664,640	-		DZA65_RS16970	0.25	-0.4
3,664,641	+		DZA65_RS16970	0.25	+0.4
3,664,641	+		DZA65_RS16970	0.25	-0.4
3,664,641	+		DZA65_RS16970	0.25	+0.1
3,664,642	-		DZA65_RS16970	0.25	-0.9
3,664,649	+		DZA65_RS16970	0.26	-0.5
3,664,650	-		DZA65_RS16970	0.26	+0.1
3,664,653	+		DZA65_RS16970	0.26	-0.6
3,664,653	+		DZA65_RS16970	0.26	+0.6
3,664,653	+		DZA65_RS16970	0.26	+1.2
3,664,653	+		DZA65_RS16970	0.26	+0.7
3,664,653	+		DZA65_RS16970	0.26	-0.1
3,664,653	+		DZA65_RS16970	0.26	+0.3
3,664,654	-		DZA65_RS16970	0.26	+1.5
3,664,654	-		DZA65_RS16970	0.26	-0.4
3,664,654	-		DZA65_RS16970	0.26	+0.5
3,664,654	-				+0.3
3,664,654	-		DZA65_RS16970	0.26	-0.1
3,664,654	-		DZA65_RS16970	0.26	+0.5
3,664,654	-		DZA65_RS16970	0.26	+0.8
3,664,654	-		DZA65_RS16970	0.26	-1.7
3,664,654	-		DZA65_RS16970	0.26	+2.2
3,664,654	-		DZA65_RS16970	0.26	+1.1
3,664,654	-		DZA65_RS16970	0.26	-1.1
3,664,654	-		DZA65_RS16970	0.26	+0.7
3,664,654	-				+0.9
3,664,654	-		DZA65_RS16970	0.26	-0.6
3,664,654	-		DZA65_RS16970	0.26	+0.6
3,664,654	-		DZA65_RS16970	0.26	+0.3
3,664,654	-		DZA65_RS16970	0.26	+2.2
3,664,654	-		DZA65_RS16970	0.26	-1.7
3,664,654	-		DZA65_RS16970	0.26	+1.3
3,664,655	+		DZA65_RS16970	0.26	+0.6
3,664,655	+		DZA65_RS16970	0.26	-1.0
3,664,655	+		DZA65_RS16970	0.26	+0.5
3,664,655	+		DZA65_RS16970	0.26	-0.9
3,664,655	+		DZA65_RS16970	0.26	-0.3
3,664,655	+		DZA65_RS16970	0.26	-1.2
3,664,655	+		DZA65_RS16970	0.26	+0.1
3,664,655	+		DZA65_RS16970	0.26	+0.5
3,664,655	+		DZA65_RS16970	0.26	+0.5
3,664,655	+		DZA65_RS16970	0.26	+0.7
3,664,656	-		DZA65_RS16970	0.26	-1.5
3,664,656	-		DZA65_RS16970	0.26	-0.3
3,664,656	-		DZA65_RS16970	0.26	+0.1
3,664,656	-		DZA65_RS16970	0.26	-0.3
3,664,660	+		DZA65_RS16970	0.27	-1.5
3,664,660	+		DZA65_RS16970	0.27	-0.3
3,664,660	+		DZA65_RS16970	0.27	-0.3
3,664,660	+		DZA65_RS16970	0.27	-1.5
3,664,660	+		DZA65_RS16970	0.27	-0.0
3,664,660	+		DZA65_RS16970	0.27	-0.2
3,664,661	-		DZA65_RS16970	0.27	+1.2
3,664,661	-		DZA65_RS16970	0.27	-0.3
3,664,661	-		DZA65_RS16970	0.27	+0.8
3,664,670	+		DZA65_RS16970	0.27	-0.7
3,664,671	-		DZA65_RS16970	0.27	-1.1
3,664,671	-		DZA65_RS16970	0.27	-0.4
3,664,671	-		DZA65_RS16970	0.27	+0.9