Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16870

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,645,831	-		DZA65_RS16865	0.86	-0.5
3,645,864	-		DZA65_RS16865	0.88	-1.7
3,645,894	+		DZA65_RS16865	0.90	+0.9
3,645,895	-		DZA65_RS16865	0.90	+0.8
3,645,911	+				+0.0
3,646,015	+				-0.2
3,646,016	-				+0.8
3,646,018	+				-2.0
3,646,019	-				-1.3
3,646,021	+				+0.1
3,646,022	-				-0.0
3,646,024	+				+0.1
3,646,025	-				+0.9
3,646,025	-				-1.3
3,646,025	-				-0.2
3,646,033	+				+0.4
3,646,034	-				+1.7
3,646,035	+				-0.1
3,646,036	-				-0.3
3,646,036	-				+0.1
3,646,044	-				-0.8
3,646,050	+				-2.1
3,646,050	+				-0.1
3,646,051	-				+0.7
3,646,122	+				-0.6
3,646,122	+				+2.5
3,646,122	+				+0.1
3,646,122	+				+0.7
3,646,122	+				-0.3
3,646,122	+				-1.1
3,646,122	+				-0.5
3,646,122	+				+0.3
3,646,122	+				+0.4
3,646,122	+				+0.6
3,646,122	+				-0.0
3,646,122	+				+0.1
3,646,123	-				+0.7
3,646,123	-				-1.2
3,646,123	-				-1.8
3,646,168	+				+0.9
3,646,168	+				-1.4
3,646,168	+				+0.7
3,646,215	+				-0.7
3,646,216	-				+0.6
3,646,235	+				+0.3
3,646,235	+				-0.5
3,646,235	+				+0.7
3,646,236	-				-0.0
3,646,236	-				+0.5
3,646,247	+				-2.0
3,646,247	+				-0.3
3,646,247	+				-1.6
3,646,247	+				+1.3
3,646,247	+				+1.9
3,646,248	-				+0.3
3,646,248	-				+1.1
3,646,267	+				+0.3
3,646,268	-				-1.5
3,646,271	+				-0.4
3,646,271	+				+0.7
3,646,289	+				-0.3
3,646,290	-				+0.3
3,646,303	-				-0.3
3,646,304	+				+0.9
3,646,305	-				-0.9
3,646,305	-				-0.7
3,646,313	+				+0.5
3,646,314	-				-0.2
3,646,314	-				+0.1
3,646,317	+				-0.3
3,646,318	-				-0.9
3,646,320	-				+0.1
3,646,325	+				+0.3
3,646,325	+				+1.1
3,646,326	-				-0.5
3,646,326	-				-1.0
3,646,346	+				-0.7
3,646,475	-				-0.5
3,646,546	+				-2.3
3,646,546	+				+0.1
3,646,593	-				-1.0
3,646,613	-				+1.3
3,646,622	+				+1.1
3,646,622	+				+0.2
3,646,623	-				-0.1
3,646,627	-				+1.0
3,646,627	-				-0.4
3,646,675	+				+0.3
3,646,676	-				-0.0
3,646,695	+				-0.1
3,646,696	-				-0.0
3,646,696	-				+0.5
3,646,708	+				-0.0
3,646,723	+				+0.6
3,646,778	+				-2.3
3,646,779	-				+1.9
3,646,779	-				-1.7
3,646,779	-				-0.2
3,646,790	+				-0.3
3,646,790	+				+0.9
3,646,811	-				+0.3
3,646,826	+				-0.5
3,646,826	+				-1.9
3,646,826	+				-0.4
3,646,826	+				+0.3
3,646,826	+				+0.3
3,646,826	+				+0.5
3,646,827	-				+1.3
3,646,827	-				-1.7
3,646,883	+				-1.8
3,646,884	-				+0.5
3,646,884	-				-0.6
3,646,905	+		DZA65_RS16870	0.10	-1.6
3,646,906	-		DZA65_RS16870	0.10	+0.2
3,646,965	+		DZA65_RS16870	0.18	-1.1
3,646,965	+		DZA65_RS16870	0.18	-0.7
3,646,965	+		DZA65_RS16870	0.18	+0.9
3,646,965	+		DZA65_RS16870	0.18	-1.4
3,646,965	+		DZA65_RS16870	0.18	-0.5
3,646,965	+		DZA65_RS16870	0.18	-0.3
3,646,965	+		DZA65_RS16870	0.18	-0.7
3,646,965	+		DZA65_RS16870	0.18	+1.0
3,646,965	+		DZA65_RS16870	0.18	+0.2
3,646,965	+		DZA65_RS16870	0.18	-2.3
3,646,965	+		DZA65_RS16870	0.18	+0.2
3,646,965	+		DZA65_RS16870	0.18	+0.1
3,646,966	-				+0.3
3,646,966	-		DZA65_RS16870	0.18	-0.7
3,646,966	-		DZA65_RS16870	0.18	-1.7
3,646,966	-		DZA65_RS16870	0.18	+0.7
3,646,966	-		DZA65_RS16870	0.18	-2.3
3,646,966	-		DZA65_RS16870	0.18	-0.1
3,646,970	+		DZA65_RS16870	0.18	-0.1
3,646,970	+		DZA65_RS16870	0.18	-0.7
3,646,970	+		DZA65_RS16870	0.18	+0.3
3,646,971	-		DZA65_RS16870	0.18	+1.6
3,646,971	-		DZA65_RS16870	0.18	+0.1
3,646,971	-		DZA65_RS16870	0.18	-0.5
3,646,971	-		DZA65_RS16870	0.18	-0.2
3,646,971	-		DZA65_RS16870	0.18	-0.0
3,646,971	-		DZA65_RS16870	0.18	-0.1
3,646,971	-		DZA65_RS16870	0.18	-2.1
3,646,971	-		DZA65_RS16870	0.18	-0.5
3,646,971	-		DZA65_RS16870	0.18	-1.3
3,646,971	-		DZA65_RS16870	0.18	-1.4
3,646,981	+		DZA65_RS16870	0.20	+0.3
3,646,981	+		DZA65_RS16870	0.20	-2.9
3,646,981	+		DZA65_RS16870	0.20	+0.1
3,646,981	+		DZA65_RS16870	0.20	-0.1
3,646,986	+		DZA65_RS16870	0.20	-0.2
3,647,034	+		DZA65_RS16870	0.26	+0.6
3,647,034	+		DZA65_RS16870	0.26	-1.1
3,647,034	+		DZA65_RS16870	0.26	-0.9
3,647,034	+		DZA65_RS16870	0.26	+0.3
3,647,034	+		DZA65_RS16870	0.26	-2.3
3,647,035	-		DZA65_RS16870	0.27	-1.0
3,647,069	+		DZA65_RS16870	0.31	-0.6
3,647,070	-		DZA65_RS16870	0.31	-0.1
3,647,160	+		DZA65_RS16870	0.42	+1.3
3,647,160	+		DZA65_RS16870	0.42	+0.1
3,647,278	-		DZA65_RS16870	0.57	+0.6
3,647,278	-		DZA65_RS16870	0.57	+0.2
3,647,278	-		DZA65_RS16870	0.57	+0.6
3,647,355	+		DZA65_RS16870	0.67	-0.1
3,647,355	+		DZA65_RS16870	0.67	-1.3
3,647,355	+		DZA65_RS16870	0.67	-1.0
3,647,359	+		DZA65_RS16870	0.67	-0.6
3,647,359	+		DZA65_RS16870	0.67	-0.9
3,647,360	-		DZA65_RS16870	0.68	-0.0
3,647,360	-		DZA65_RS16870	0.68	+0.1
3,647,360	-		DZA65_RS16870	0.68	-1.4
3,647,360	-		DZA65_RS16870	0.68	-0.0
3,647,390	+		DZA65_RS16870	0.71	-0.9
3,647,390	+		DZA65_RS16870	0.71	-1.3
3,647,390	+		DZA65_RS16870	0.71	-0.3
3,647,390	+		DZA65_RS16870	0.71	+0.1
3,647,390	+		DZA65_RS16870	0.71	-0.9
3,647,391	-		DZA65_RS16870	0.71	-0.9
3,647,391	-		DZA65_RS16870	0.71	-2.2
3,647,391	-		DZA65_RS16870	0.71	-0.6
3,647,391	-		DZA65_RS16870	0.71	-0.5
3,647,391	-		DZA65_RS16870	0.71	-0.0
3,647,391	-		DZA65_RS16870	0.71	+1.1
3,647,404	+		DZA65_RS16870	0.73	-1.1
3,647,461	+		DZA65_RS16870	0.80	+0.5
3,647,481	-		DZA65_RS16870	0.83	+0.6
3,647,481	-		DZA65_RS16870	0.83	+0.1
3,647,498	+		DZA65_RS16870	0.85	-1.5
3,647,589	+				-0.7
3,647,589	+				+1.1
3,647,589	+				+0.8
3,647,590	-				-1.9
3,647,602	+				-2.0
3,647,602	+				+0.2
3,647,602	+				+0.5
3,647,602	+				-0.4
3,647,602	+				-0.3
3,647,602	+				-0.2
3,647,602	+				+0.5
3,647,602	+				-1.7
3,647,603	-				+0.3
3,647,603	-				+1.2
3,647,603	-				+1.1
3,647,603	-				-1.1
3,647,603	-				-0.7
3,647,603	-				+0.9
3,647,603	-				-1.3
3,647,604	+				+0.6
3,647,604	+				+1.1
3,647,604	+				-0.1
3,647,604	+				-0.7
3,647,604	+				-0.0
3,647,604	+				-0.4
3,647,604	+				-0.2
3,647,604	+				+0.2
3,647,604	+				+1.6
3,647,604	+				-0.1
3,647,605	-				-0.5
3,647,605	-				+0.1
3,647,605	-				+0.3
3,647,605	-				-0.7
3,647,605	-				-1.1
3,647,605	-				-1.4
3,647,605	-				-0.3
3,647,637	-				-0.9
3,647,642	+				+0.3
3,647,642	+				-0.8
3,647,642	+				+0.8
3,647,642	+				+2.0
3,647,642	+				-0.0
3,647,642	+				+0.7
3,647,642	+				-1.5
3,647,643	-				-0.4
3,647,644	+				-0.5
3,647,645	-				+1.8
3,647,704	+				-0.7
3,647,704	+				-1.1
3,647,704	+				+0.8
3,647,705	-				+1.1
3,647,714	+				-1.1
3,647,715	-				+1.2
3,647,715	-				-2.0
3,647,720	-				-2.0
3,647,789	+				-0.6
3,647,807	-				-2.5
3,647,809	+				-0.1
3,647,810	-				-0.7
3,647,816	+				-1.3
3,647,830	+				-0.2
3,647,830	+				-0.5
3,647,830	+				-0.7
3,647,830	+				+0.3
3,647,830	+				+1.8
3,647,830	+				-0.1
3,647,831	-				-0.0
3,647,831	-				-0.1
3,647,833	-				+0.0
3,647,833	-				-1.7
3,647,853	-				-2.7
3,647,891	-				-1.3
3,647,891	-				-0.4
3,647,891	-				-1.0
3,647,929	+				-1.0
3,647,929	+				-1.0
3,647,929	+				+0.3
3,647,930	-				-1.1
3,647,930	-				+1.2
3,647,931	+				+0.5
3,647,931	+				-1.1
3,647,932	-				-1.3
3,647,932	-				+0.4
3,647,932	-				-2.3
3,647,994	+		DZA65_RS16875	0.11	-1.2
3,647,995	-		DZA65_RS16875	0.11	-1.4
3,647,995	-		DZA65_RS16875	0.11	+0.4
3,648,003	+		DZA65_RS16875	0.15	-0.7
3,648,004	-		DZA65_RS16875	0.15	-1.5
3,648,004	-		DZA65_RS16875	0.15	+0.3
3,648,004	-		DZA65_RS16875	0.15	-1.0
3,648,004	-		DZA65_RS16875	0.15	+1.0
3,648,004	-		DZA65_RS16875	0.15	+0.9
3,648,025	-		DZA65_RS16875	0.23	-2.3
3,648,025	-		DZA65_RS16875	0.23	-0.0
3,648,025	-		DZA65_RS16875	0.23	+0.5
3,648,055	+		DZA65_RS16875	0.34	-1.7
3,648,056	-		DZA65_RS16875	0.35	-0.3
3,648,056	-		DZA65_RS16875	0.35	-0.5
3,648,056	-		DZA65_RS16875	0.35	-0.7
3,648,071	+		DZA65_RS16875	0.41	-0.4
3,648,072	-		DZA65_RS16875	0.41	-0.1
3,648,072	-		DZA65_RS16875	0.41	-0.3
3,648,072	-		DZA65_RS16875	0.41	-1.4
3,648,072	-		DZA65_RS16875	0.41	-1.3
3,648,097	+		DZA65_RS16875	0.51	+0.1
3,648,098	-		DZA65_RS16875	0.51	+0.8
3,648,098	-		DZA65_RS16875	0.51	+0.3
3,648,103	-		DZA65_RS16875	0.53	-0.5
3,648,156	+		DZA65_RS16875	0.73	-0.1
3,648,157	-		DZA65_RS16875	0.74	-0.2
3,648,216	+				-2.0
3,648,223	+				+0.1
3,648,223	+				-0.3
3,648,223	+				-1.6
3,648,223	+				+0.1
3,648,224	-				+0.3
3,648,224	-				+0.1
3,648,224	-				+0.9
3,648,224	-				+0.3
3,648,224	-				-0.4
3,648,224	-				-2.0
3,648,224	-				-0.1
3,648,254	+				-0.7
3,648,254	+				-1.5
3,648,284	+				-0.4
3,648,285	-				-0.3
3,648,285	-				+0.5
3,648,285	-				+2.2
3,648,367	+		DZA65_RS16880	0.30	-1.7
3,648,367	+		DZA65_RS16880	0.30	+2.1
3,648,367	+		DZA65_RS16880	0.30	-0.0
3,648,515	+		DZA65_RS16880	0.69	+0.1