Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16825

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,630,183	+				-0.9
3,630,364	+		DZA65_RS16820	0.14	+0.0
3,630,364	+		DZA65_RS16820	0.14	+2.5
3,630,409	+		DZA65_RS16820	0.19	+1.7
3,630,533	+		DZA65_RS16820	0.35	-0.7
3,630,533	+		DZA65_RS16820	0.35	+0.8
3,630,533	+		DZA65_RS16820	0.35	+0.5
3,630,533	+		DZA65_RS16820	0.35	-0.5
3,630,533	+		DZA65_RS16820	0.35	+1.7
3,630,533	+		DZA65_RS16820	0.35	+0.3
3,630,533	+		DZA65_RS16820	0.35	+0.5
3,630,533	+		DZA65_RS16820	0.35	+0.2
3,630,533	+		DZA65_RS16820	0.35	+1.0
3,630,533	+		DZA65_RS16820	0.35	+0.3
3,630,534	-		DZA65_RS16820	0.35	+1.5
3,630,534	-				-1.3
3,630,534	-		DZA65_RS16820	0.35	+0.9
3,630,534	-		DZA65_RS16820	0.35	+0.3
3,630,534	-		DZA65_RS16820	0.35	-0.0
3,630,534	-		DZA65_RS16820	0.35	-0.4
3,630,534	-		DZA65_RS16820	0.35	+1.0
3,630,544	+		DZA65_RS16820	0.37	-2.0
3,630,617	-		DZA65_RS16820	0.46	+2.4
3,630,771	+		DZA65_RS16820	0.65	+0.3
3,630,829	+		DZA65_RS16820	0.73	-2.3
3,630,829	+		DZA65_RS16820	0.73	+0.8
3,630,829	+		DZA65_RS16820	0.73	+0.3
3,630,829	+		DZA65_RS16820	0.73	+0.0
3,630,829	+		DZA65_RS16820	0.73	+0.2
3,630,830	-		DZA65_RS16820	0.73	-0.3
3,630,830	-		DZA65_RS16820	0.73	+1.0
3,630,830	-		DZA65_RS16820	0.73	-0.2
3,630,830	-		DZA65_RS16820	0.73	-0.7
3,630,830	-		DZA65_RS16820	0.73	-1.8
3,630,830	-		DZA65_RS16820	0.73	+1.0
3,630,830	-		DZA65_RS16820	0.73	+0.7
3,630,830	-		DZA65_RS16820	0.73	+0.9
3,630,830	-		DZA65_RS16820	0.73	+1.0
3,630,831	-		DZA65_RS16820	0.73	+0.5
3,630,837	+				+0.7
3,630,869	+		DZA65_RS16820	0.78	-0.1
3,630,869	+		DZA65_RS16820	0.78	+1.1
3,630,870	-		DZA65_RS16820	0.78	+0.8
3,630,870	-		DZA65_RS16820	0.78	+0.5
3,630,870	-		DZA65_RS16820	0.78	+0.4
3,630,870	-		DZA65_RS16820	0.78	+1.5
3,630,936	-		DZA65_RS16820	0.86	+0.3
3,631,010	+				-0.3
3,631,010	+				-1.0
3,631,025	+				+0.3
3,631,025	+				+0.5
3,631,025	+				-0.3
3,631,026	-				-0.5
3,631,026	-				+0.6
3,631,026	-				+1.4
3,631,046	+				+1.9
3,631,046	+				+0.8
3,631,047	-				+0.7
3,631,047	-				-0.6
3,631,066	+				-0.5
3,631,066	+				+0.6
3,631,066	+				+0.2
3,631,066	+				+0.4
3,631,066	+				+0.3
3,631,067	-				+1.1
3,631,067	-				-2.9
3,631,074	+				-1.9
3,631,177	+				-1.5
3,631,178	-				-0.9
3,631,178	-				+0.4
3,631,254	+		DZA65_RS16825	0.15	+0.7
3,631,334	+		DZA65_RS16825	0.20	+1.8
3,631,335	-		DZA65_RS16825	0.20	+0.0
3,631,352	+		DZA65_RS16825	0.21	-0.3
3,631,352	+		DZA65_RS16825	0.21	+0.4
3,631,353	-		DZA65_RS16825	0.21	-0.7
3,631,419	+		DZA65_RS16825	0.26	+1.6
3,631,419	+				+1.9
3,631,419	+		DZA65_RS16825	0.26	-0.3
3,631,473	+		DZA65_RS16825	0.30	+0.6
3,631,473	+		DZA65_RS16825	0.30	+2.0
3,631,473	+		DZA65_RS16825	0.30	+0.8
3,631,473	+		DZA65_RS16825	0.30	+0.3
3,631,473	+		DZA65_RS16825	0.30	+0.3
3,631,474	-		DZA65_RS16825	0.30	-0.5
3,631,474	-		DZA65_RS16825	0.30	+0.5
3,631,474	-		DZA65_RS16825	0.30	+0.0
3,631,495	+		DZA65_RS16825	0.31	+0.9
3,631,495	+		DZA65_RS16825	0.31	-1.7
3,631,495	+		DZA65_RS16825	0.31	+0.4
3,631,495	+		DZA65_RS16825	0.31	+1.1
3,631,495	+		DZA65_RS16825	0.31	+0.3
3,631,495	+		DZA65_RS16825	0.31	+1.0
3,631,495	+		DZA65_RS16825	0.31	-0.8
3,631,495	+		DZA65_RS16825	0.31	-0.7
3,631,495	+		DZA65_RS16825	0.31	-0.3
3,631,495	+		DZA65_RS16825	0.31	+0.9
3,631,495	+		DZA65_RS16825	0.31	+1.1
3,631,495	+		DZA65_RS16825	0.31	-1.7
3,631,495	+		DZA65_RS16825	0.31	-0.4
3,631,495	+		DZA65_RS16825	0.31	+1.3
3,631,496	-		DZA65_RS16825	0.31	-0.5
3,631,496	-		DZA65_RS16825	0.31	-1.3
3,631,496	-		DZA65_RS16825	0.31	+1.3
3,631,496	-		DZA65_RS16825	0.31	-0.7
3,631,496	-		DZA65_RS16825	0.31	+3.3
3,631,496	-		DZA65_RS16825	0.31	-0.4
3,631,496	-		DZA65_RS16825	0.31	+0.0
3,631,496	-		DZA65_RS16825	0.31	+0.7
3,631,496	-		DZA65_RS16825	0.31	+1.2
3,631,536	+		DZA65_RS16825	0.34	-1.3
3,631,538	+		DZA65_RS16825	0.34	+0.1
3,631,538	+		DZA65_RS16825	0.34	-2.3
3,631,538	+		DZA65_RS16825	0.34	+0.9
3,631,538	+		DZA65_RS16825	0.34	-2.3
3,631,538	+		DZA65_RS16825	0.34	+0.9
3,631,538	+		DZA65_RS16825	0.34	-0.1
3,631,538	+		DZA65_RS16825	0.34	+0.1
3,631,538	+		DZA65_RS16825	0.34	+0.8
3,631,539	-		DZA65_RS16825	0.34	+1.6
3,631,567	+		DZA65_RS16825	0.36	+0.9
3,631,567	+		DZA65_RS16825	0.36	+0.0
3,631,567	+		DZA65_RS16825	0.36	+0.7
3,631,567	+		DZA65_RS16825	0.36	+0.3
3,631,568	-		DZA65_RS16825	0.36	+0.3
3,631,568	-		DZA65_RS16825	0.36	+1.5
3,631,568	-		DZA65_RS16825	0.36	+1.2
3,631,581	+		DZA65_RS16825	0.37	+0.6
3,631,581	+		DZA65_RS16825	0.37	-0.3
3,631,581	+		DZA65_RS16825	0.37	+1.9
3,631,582	-		DZA65_RS16825	0.37	+0.6
3,631,582	-		DZA65_RS16825	0.37	-0.7
3,631,582	-		DZA65_RS16825	0.37	-1.8
3,631,582	-		DZA65_RS16825	0.37	+0.4
3,631,585	-		DZA65_RS16825	0.38	+1.1
3,631,801	-		DZA65_RS16825	0.53	+0.9
3,632,086	-		DZA65_RS16825	0.73	+1.2
3,632,120	+		DZA65_RS16825	0.75	+1.6
3,632,120	+		DZA65_RS16825	0.75	-2.4
3,632,121	-		DZA65_RS16825	0.75	+0.7
3,632,139	-		DZA65_RS16825	0.76	+1.6
3,632,141	+		DZA65_RS16825	0.76	-0.3
3,632,141	+		DZA65_RS16825	0.76	+0.9
3,632,141	+		DZA65_RS16825	0.76	+1.2
3,632,141	+		DZA65_RS16825	0.76	-1.4
3,632,141	+		DZA65_RS16825	0.76	+0.3
3,632,141	+				+0.3
3,632,141	+		DZA65_RS16825	0.76	+0.4
3,632,141	+		DZA65_RS16825	0.76	-1.5
3,632,141	+		DZA65_RS16825	0.76	+0.9
3,632,141	+		DZA65_RS16825	0.76	+0.3
3,632,141	+		DZA65_RS16825	0.76	+1.0
3,632,141	+		DZA65_RS16825	0.76	-0.3
3,632,141	+		DZA65_RS16825	0.76	-0.3
3,632,141	+				+2.4
3,632,142	-		DZA65_RS16825	0.76	-0.2
3,632,142	-		DZA65_RS16825	0.76	+1.5
3,632,142	-		DZA65_RS16825	0.76	+0.3
3,632,142	-		DZA65_RS16825	0.76	+0.1
3,632,142	-		DZA65_RS16825	0.76	-0.0
3,632,142	-		DZA65_RS16825	0.76	+0.6
3,632,142	-		DZA65_RS16825	0.76	+0.3
3,632,142	-		DZA65_RS16825	0.76	+0.3
3,632,142	-		DZA65_RS16825	0.76	+0.2
3,632,190	-		DZA65_RS16825	0.80	-0.2
3,632,211	-		DZA65_RS16825	0.81	-0.8
3,632,256	-		DZA65_RS16825	0.84	-0.7
3,632,256	-		DZA65_RS16825	0.84	-2.2
3,632,280	+		DZA65_RS16825	0.86	+0.6
3,632,319	+		DZA65_RS16825	0.89	+0.7
3,632,319	+		DZA65_RS16825	0.89	-0.0
3,632,319	+		DZA65_RS16825	0.89	+0.0
3,632,319	+		DZA65_RS16825	0.89	-0.5
3,632,319	+		DZA65_RS16825	0.89	+0.8
3,632,320	-		DZA65_RS16825	0.89	-0.3
3,632,320	-		DZA65_RS16825	0.89	+1.4
3,632,320	-		DZA65_RS16825	0.89	+2.4
3,632,320	-		DZA65_RS16825	0.89	+1.6
3,632,320	-		DZA65_RS16825	0.89	+0.5
3,632,320	-		DZA65_RS16825	0.89	-2.5
3,632,325	+		DZA65_RS16825	0.89	-0.7
3,632,325	+		DZA65_RS16825	0.89	+0.3
3,632,326	-		DZA65_RS16825	0.89	+1.0
3,632,326	-		DZA65_RS16825	0.89	-0.0
3,632,349	+				+0.2
3,632,350	-				+1.2
3,632,369	+				-0.3
3,632,369	+				-0.2
3,632,370	-				+1.8
3,632,378	+				+0.3
3,632,378	+				+0.5
3,632,402	-				+1.5
3,632,402	-				+0.8
3,632,479	-				-0.5
3,632,509	-				-1.5
3,632,535	+				+0.4
3,632,536	-				+2.2
3,632,650	+				-2.2
3,632,660	+				+0.6
3,632,660	+				-0.4
3,632,660	+				-1.1
3,632,661	-				-1.3
3,632,674	+				-0.3
3,632,675	-				-0.1
3,632,705	+				+0.9
3,632,705	+				-0.0
3,632,706	-				+0.8
3,632,706	-				-0.3
3,632,706	-				-3.4
3,632,725	+				-1.7
3,632,725	+				+1.0
3,632,726	-				+0.7
3,632,726	-				+1.4
3,632,729	+				-1.3
3,632,730	-				+0.3
3,632,730	-				-0.0
3,632,767	+				-0.0
3,632,767	+				+0.3
3,632,784	+				-0.7
3,632,784	+				-0.7
3,632,785	-				+0.0
3,632,791	-				+0.4
3,632,812	+				+0.3
3,632,837	+				-0.5
3,632,837	+				+0.0
3,632,837	+				+0.5
3,632,837	+				+1.1
3,632,837	+				-1.7
3,632,838	-				+1.3
3,632,871	+				-0.5
3,632,871	+				+0.5
3,632,872	-				-1.0
3,633,001	+				-0.8
3,633,001	+				+0.9
3,633,001	+				-0.7
3,633,002	-				-0.3
3,633,002	-				+1.0
3,633,002	-				-0.2
3,633,002	-				+0.3
3,633,027	-				+0.4
3,633,040	+				+0.2
3,633,041	-				+1.2
3,633,118	+				+0.6
3,633,123	+				-0.0
3,633,123	+				+0.6
3,633,123	+				+1.2
3,633,123	+				+1.4
3,633,123	+				+0.7
3,633,123	+				+0.3
3,633,124	-				+0.1
3,633,173	-				-0.3
3,633,181	+				-0.4
3,633,181	+				-0.1
3,633,182	-				-1.7
3,633,186	+				+0.5
3,633,191	+				+0.6
3,633,230	+				-1.0
3,633,230	+				-0.1
3,633,230	+				-0.2
3,633,230	+				+0.3
3,633,230	+				+0.1
3,633,230	+				-0.6
3,633,230	+				-0.7
3,633,230	+				+1.2
3,633,230	+				-0.9
3,633,231	-				-0.9
3,633,231	-				-0.2
3,633,231	-				-1.5
3,633,231	-				+1.0
3,633,231	-				+0.1
3,633,231	-				-1.3
3,633,231	-				-0.2
3,633,231	-				-1.2
3,633,231	-				+0.8
3,633,324	-				-1.6
3,633,409	+				-0.1
3,633,409	+				-2.0
3,633,410	-				-1.6
3,633,410	-				-0.3
3,633,422	-				-1.5