Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16820

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,629,260	-		DZA65_RS16815	0.25	-0.5
3,629,319	-		DZA65_RS16815	0.30	-2.0
3,629,375	-		DZA65_RS16815	0.34	-0.1
3,629,377	+		DZA65_RS16815	0.34	+0.7
3,629,378	-		DZA65_RS16815	0.34	-0.6
3,629,378	-		DZA65_RS16815	0.34	+0.9
3,629,418	+		DZA65_RS16815	0.37	-0.7
3,629,419	-		DZA65_RS16815	0.37	-1.3
3,629,460	+		DZA65_RS16815	0.40	+1.6
3,629,460	+		DZA65_RS16815	0.40	+1.1
3,629,460	+		DZA65_RS16815	0.40	-0.2
3,629,460	+		DZA65_RS16815	0.40	+0.2
3,629,460	+		DZA65_RS16815	0.40	-0.4
3,629,460	+		DZA65_RS16815	0.40	+0.3
3,629,460	+		DZA65_RS16815	0.40	+0.3
3,629,460	+		DZA65_RS16815	0.40	+0.8
3,629,460	+		DZA65_RS16815	0.40	+0.8
3,629,460	+		DZA65_RS16815	0.40	-0.2
3,629,460	+		DZA65_RS16815	0.40	+0.7
3,629,460	+		DZA65_RS16815	0.40	-0.4
3,629,460	+		DZA65_RS16815	0.40	+3.0
3,629,460	+		DZA65_RS16815	0.40	+1.0
3,629,460	+		DZA65_RS16815	0.40	+0.4
3,629,460	+		DZA65_RS16815	0.40	+1.0
3,629,460	+		DZA65_RS16815	0.40	+2.3
3,629,460	+		DZA65_RS16815	0.40	+0.9
3,629,460	+		DZA65_RS16815	0.40	+1.3
3,629,460	+		DZA65_RS16815	0.40	+0.9
3,629,460	+		DZA65_RS16815	0.40	+1.3
3,629,460	+		DZA65_RS16815	0.40	-0.4
3,629,460	+		DZA65_RS16815	0.40	+0.5
3,629,461	-		DZA65_RS16815	0.40	-1.5
3,629,461	-		DZA65_RS16815	0.40	+0.1
3,629,461	-		DZA65_RS16815	0.40	+1.3
3,629,461	-		DZA65_RS16815	0.40	+0.3
3,629,461	-		DZA65_RS16815	0.40	-0.4
3,629,461	-		DZA65_RS16815	0.40	+0.7
3,629,461	-		DZA65_RS16815	0.40	-1.2
3,629,461	-		DZA65_RS16815	0.40	+0.7
3,629,461	-		DZA65_RS16815	0.40	+0.6
3,629,461	-		DZA65_RS16815	0.40	+0.2
3,629,461	-		DZA65_RS16815	0.40	+1.5
3,629,461	-		DZA65_RS16815	0.40	+0.9
3,629,461	-		DZA65_RS16815	0.40	+0.7
3,629,461	-		DZA65_RS16815	0.40	-0.4
3,629,461	-		DZA65_RS16815	0.40	+0.5
3,629,461	-		DZA65_RS16815	0.40	+1.7
3,629,461	-		DZA65_RS16815	0.40	+0.7
3,629,461	-		DZA65_RS16815	0.40	+0.3
3,629,487	+		DZA65_RS16815	0.42	+0.5
3,629,487	+		DZA65_RS16815	0.42	+0.1
3,629,506	-		DZA65_RS16815	0.44	+1.5
3,629,506	-		DZA65_RS16815	0.44	+0.7
3,629,589	+		DZA65_RS16815	0.50	-0.5
3,629,643	+		DZA65_RS16815	0.54	-0.0
3,629,644	-		DZA65_RS16815	0.54	+0.3
3,629,693	+		DZA65_RS16815	0.58	+0.3
3,629,778	+		DZA65_RS16815	0.64	+0.5
3,629,826	+		DZA65_RS16815	0.67	+0.4
3,629,826	+		DZA65_RS16815	0.67	+2.5
3,629,827	-		DZA65_RS16815	0.68	+0.6
3,629,827	-		DZA65_RS16815	0.68	+1.2
3,629,827	-		DZA65_RS16815	0.68	-0.0
3,629,832	-		DZA65_RS16815	0.68	+0.9
3,629,832	-		DZA65_RS16815	0.68	+1.0
3,629,894	+		DZA65_RS16815	0.73	+0.3
3,629,895	-		DZA65_RS16815	0.73	+0.5
3,629,895	-		DZA65_RS16815	0.73	+0.7
3,629,895	-		DZA65_RS16815	0.73	+0.1
3,629,917	+		DZA65_RS16815	0.74	-2.3
3,629,918	-		DZA65_RS16815	0.74	+0.3
3,629,918	-		DZA65_RS16815	0.74	+0.9
3,629,918	-		DZA65_RS16815	0.74	+0.0
3,629,918	-		DZA65_RS16815	0.74	+0.9
3,629,918	-		DZA65_RS16815	0.74	+0.7
3,629,958	+		DZA65_RS16815	0.77	+2.5
3,629,993	+		DZA65_RS16815	0.80	-0.2
3,629,994	-		DZA65_RS16815	0.80	+0.3
3,630,183	+				-0.9
3,630,364	+		DZA65_RS16820	0.14	+0.0
3,630,364	+		DZA65_RS16820	0.14	+2.5
3,630,409	+		DZA65_RS16820	0.19	+1.7
3,630,533	+		DZA65_RS16820	0.35	-0.7
3,630,533	+		DZA65_RS16820	0.35	+0.8
3,630,533	+		DZA65_RS16820	0.35	+0.5
3,630,533	+		DZA65_RS16820	0.35	-0.5
3,630,533	+		DZA65_RS16820	0.35	+1.7
3,630,533	+		DZA65_RS16820	0.35	+0.3
3,630,533	+		DZA65_RS16820	0.35	+0.5
3,630,533	+		DZA65_RS16820	0.35	+0.2
3,630,533	+		DZA65_RS16820	0.35	+1.0
3,630,533	+		DZA65_RS16820	0.35	+0.3
3,630,534	-		DZA65_RS16820	0.35	+1.5
3,630,534	-				-1.3
3,630,534	-		DZA65_RS16820	0.35	+0.9
3,630,534	-		DZA65_RS16820	0.35	+0.3
3,630,534	-		DZA65_RS16820	0.35	-0.0
3,630,534	-		DZA65_RS16820	0.35	-0.4
3,630,534	-		DZA65_RS16820	0.35	+1.0
3,630,544	+		DZA65_RS16820	0.37	-2.0
3,630,617	-		DZA65_RS16820	0.46	+2.4
3,630,771	+		DZA65_RS16820	0.65	+0.3
3,630,829	+		DZA65_RS16820	0.73	-2.3
3,630,829	+		DZA65_RS16820	0.73	+0.8
3,630,829	+		DZA65_RS16820	0.73	+0.3
3,630,829	+		DZA65_RS16820	0.73	+0.0
3,630,829	+		DZA65_RS16820	0.73	+0.2
3,630,830	-		DZA65_RS16820	0.73	-0.3
3,630,830	-		DZA65_RS16820	0.73	+1.0
3,630,830	-		DZA65_RS16820	0.73	-0.2
3,630,830	-		DZA65_RS16820	0.73	-0.7
3,630,830	-		DZA65_RS16820	0.73	-1.8
3,630,830	-		DZA65_RS16820	0.73	+1.0
3,630,830	-		DZA65_RS16820	0.73	+0.7
3,630,830	-		DZA65_RS16820	0.73	+0.9
3,630,830	-		DZA65_RS16820	0.73	+1.0
3,630,831	-		DZA65_RS16820	0.73	+0.5
3,630,837	+				+0.7
3,630,869	+		DZA65_RS16820	0.78	-0.1
3,630,869	+		DZA65_RS16820	0.78	+1.1
3,630,870	-		DZA65_RS16820	0.78	+0.8
3,630,870	-		DZA65_RS16820	0.78	+0.5
3,630,870	-		DZA65_RS16820	0.78	+0.4
3,630,870	-		DZA65_RS16820	0.78	+1.5
3,630,936	-		DZA65_RS16820	0.86	+0.3
3,631,010	+				-0.3
3,631,010	+				-1.0
3,631,025	+				+0.3
3,631,025	+				+0.5
3,631,025	+				-0.3
3,631,026	-				-0.5
3,631,026	-				+0.6
3,631,026	-				+1.4
3,631,046	+				+1.9
3,631,046	+				+0.8
3,631,047	-				+0.7
3,631,047	-				-0.6
3,631,066	+				-0.5
3,631,066	+				+0.6
3,631,066	+				+0.2
3,631,066	+				+0.4
3,631,066	+				+0.3
3,631,067	-				+1.1
3,631,067	-				-2.9
3,631,074	+				-1.9
3,631,177	+				-1.5
3,631,178	-				-0.9
3,631,178	-				+0.4
3,631,254	+		DZA65_RS16825	0.15	+0.7
3,631,334	+		DZA65_RS16825	0.20	+1.8
3,631,335	-		DZA65_RS16825	0.20	+0.0
3,631,352	+		DZA65_RS16825	0.21	-0.3
3,631,352	+		DZA65_RS16825	0.21	+0.4
3,631,353	-		DZA65_RS16825	0.21	-0.7
3,631,419	+		DZA65_RS16825	0.26	+1.6
3,631,419	+				+1.9
3,631,419	+		DZA65_RS16825	0.26	-0.3
3,631,473	+		DZA65_RS16825	0.30	+0.6
3,631,473	+		DZA65_RS16825	0.30	+2.0
3,631,473	+		DZA65_RS16825	0.30	+0.8
3,631,473	+		DZA65_RS16825	0.30	+0.3
3,631,473	+		DZA65_RS16825	0.30	+0.3
3,631,474	-		DZA65_RS16825	0.30	-0.5
3,631,474	-		DZA65_RS16825	0.30	+0.5
3,631,474	-		DZA65_RS16825	0.30	+0.0
3,631,495	+		DZA65_RS16825	0.31	+0.9
3,631,495	+		DZA65_RS16825	0.31	-1.7
3,631,495	+		DZA65_RS16825	0.31	+0.4
3,631,495	+		DZA65_RS16825	0.31	+1.1
3,631,495	+		DZA65_RS16825	0.31	+0.3
3,631,495	+		DZA65_RS16825	0.31	+1.0
3,631,495	+		DZA65_RS16825	0.31	-0.8
3,631,495	+		DZA65_RS16825	0.31	-0.7
3,631,495	+		DZA65_RS16825	0.31	-0.3
3,631,495	+		DZA65_RS16825	0.31	+0.9
3,631,495	+		DZA65_RS16825	0.31	+1.1
3,631,495	+		DZA65_RS16825	0.31	-1.7
3,631,495	+		DZA65_RS16825	0.31	-0.4
3,631,495	+		DZA65_RS16825	0.31	+1.3
3,631,496	-		DZA65_RS16825	0.31	-0.5
3,631,496	-		DZA65_RS16825	0.31	-1.3
3,631,496	-		DZA65_RS16825	0.31	+1.3
3,631,496	-		DZA65_RS16825	0.31	-0.7
3,631,496	-		DZA65_RS16825	0.31	+3.3
3,631,496	-		DZA65_RS16825	0.31	-0.4
3,631,496	-		DZA65_RS16825	0.31	+0.0
3,631,496	-		DZA65_RS16825	0.31	+0.7
3,631,496	-		DZA65_RS16825	0.31	+1.2
3,631,536	+		DZA65_RS16825	0.34	-1.3
3,631,538	+		DZA65_RS16825	0.34	+0.1
3,631,538	+		DZA65_RS16825	0.34	-2.3
3,631,538	+		DZA65_RS16825	0.34	+0.9
3,631,538	+		DZA65_RS16825	0.34	-2.3
3,631,538	+		DZA65_RS16825	0.34	+0.9
3,631,538	+		DZA65_RS16825	0.34	-0.1
3,631,538	+		DZA65_RS16825	0.34	+0.1
3,631,538	+		DZA65_RS16825	0.34	+0.8
3,631,539	-		DZA65_RS16825	0.34	+1.6
3,631,567	+		DZA65_RS16825	0.36	+0.9
3,631,567	+		DZA65_RS16825	0.36	+0.0
3,631,567	+		DZA65_RS16825	0.36	+0.7
3,631,567	+		DZA65_RS16825	0.36	+0.3
3,631,568	-		DZA65_RS16825	0.36	+0.3
3,631,568	-		DZA65_RS16825	0.36	+1.5
3,631,568	-		DZA65_RS16825	0.36	+1.2
3,631,581	+		DZA65_RS16825	0.37	+0.6
3,631,581	+		DZA65_RS16825	0.37	-0.3
3,631,581	+		DZA65_RS16825	0.37	+1.9
3,631,582	-		DZA65_RS16825	0.37	+0.6
3,631,582	-		DZA65_RS16825	0.37	-0.7
3,631,582	-		DZA65_RS16825	0.37	-1.8
3,631,582	-		DZA65_RS16825	0.37	+0.4
3,631,585	-		DZA65_RS16825	0.38	+1.1
3,631,801	-		DZA65_RS16825	0.53	+0.9