Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16795

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,623,448	+		DZA65_RS16790	0.71	+1.0
3,623,448	+		DZA65_RS16790	0.71	-0.8
3,623,448	+		DZA65_RS16790	0.71	-0.9
3,623,449	-		DZA65_RS16790	0.71	-0.5
3,623,449	-		DZA65_RS16790	0.71	-1.3
3,623,460	+		DZA65_RS16790	0.72	-0.7
3,623,460	+		DZA65_RS16790	0.72	-0.5
3,623,461	-		DZA65_RS16790	0.72	-0.7
3,623,461	-		DZA65_RS16790	0.72	+0.6
3,623,461	-		DZA65_RS16790	0.72	+0.1
3,623,500	-		DZA65_RS16790	0.76	-0.7
3,623,552	+		DZA65_RS16790	0.80	-0.7
3,623,665	-		DZA65_RS16790	0.89	-0.5
3,623,665	-		DZA65_RS16790	0.89	-1.0
3,623,700	+				-1.0
3,623,700	+				-0.3
3,623,700	+				+0.6
3,623,701	-				-0.3
3,623,701	-				+0.1
3,623,702	+				-1.2
3,623,702	+				+1.1
3,623,702	+				-0.3
3,623,702	+				+1.4
3,623,702	+				+0.5
3,623,703	-				+0.8
3,623,703	-				-0.2
3,623,703	-				+0.5
3,623,703	-				-2.9
3,623,724	+				-0.9
3,623,724	+				+0.3
3,623,724	+				+1.6
3,623,725	-				+0.5
3,623,725	-				+0.1
3,623,725	-				-0.7
3,623,725	-				+1.9
3,623,725	-				-0.3
3,623,725	-				+0.4
3,623,725	-				+1.1
3,623,742	-				+0.5
3,623,757	-				-0.3
3,623,810	+				-0.8
3,623,887	-				-0.6
3,623,887	-				-0.6
3,623,887	-				-0.3
3,623,934	-				+0.5
3,623,979	+				+0.5
3,623,979	+				+0.2
3,623,979	+				-2.1
3,623,998	+				-0.7
3,623,998	+				-0.6
3,624,013	-				+2.2
3,624,043	-				+0.3
3,624,146	-				-1.7
3,624,302	+				-1.1
3,624,302	+				-0.7
3,624,302	+				-0.9
3,624,302	+				+0.1
3,624,303	-				-1.6
3,624,303	-				-2.1
3,624,303	-				-2.4
3,624,304	+				+0.3
3,624,305	-				-0.7
3,624,323	-				+1.6
3,624,323	-				-0.1
3,624,363	+				+0.5
3,624,516	-		DZA65_RS16795	0.16	-1.3
3,624,516	-		DZA65_RS16795	0.16	-1.4
3,624,519	+		DZA65_RS16795	0.17	-0.5
3,624,624	-		DZA65_RS16795	0.26	+0.9
3,624,624	-		DZA65_RS16795	0.26	-1.9
3,624,624	-		DZA65_RS16795	0.26	+1.6
3,624,624	-		DZA65_RS16795	0.26	-1.3
3,624,752	-		DZA65_RS16795	0.36	-0.5
3,624,761	-		DZA65_RS16795	0.37	-0.7
3,624,767	+		DZA65_RS16795	0.38	-0.5
3,624,767	+		DZA65_RS16795	0.38	-2.7
3,624,851	-		DZA65_RS16795	0.45	+0.4
3,624,851	-		DZA65_RS16795	0.45	-0.3
3,624,914	+		DZA65_RS16795	0.50	+1.3
3,624,914	+		DZA65_RS16795	0.50	+0.2
3,624,914	+		DZA65_RS16795	0.50	+1.6
3,624,914	+		DZA65_RS16795	0.50	+3.1
3,624,914	+		DZA65_RS16795	0.50	+1.6
3,624,914	+				+0.3
3,624,914	+		DZA65_RS16795	0.50	-2.3
3,624,914	+		DZA65_RS16795	0.50	-1.1
3,624,914	+		DZA65_RS16795	0.50	-1.5
3,624,914	+		DZA65_RS16795	0.50	+1.6
3,624,914	+		DZA65_RS16795	0.50	+0.8
3,624,914	+		DZA65_RS16795	0.50	+0.3
3,624,914	+		DZA65_RS16795	0.50	-3.1
3,624,914	+		DZA65_RS16795	0.50	+1.2
3,624,914	+		DZA65_RS16795	0.50	+0.3
3,624,914	+		DZA65_RS16795	0.50	+0.8
3,624,914	+		DZA65_RS16795	0.50	-1.7
3,624,915	-		DZA65_RS16795	0.50	-0.0
3,624,915	-		DZA65_RS16795	0.50	-0.4
3,624,915	-		DZA65_RS16795	0.50	-0.1
3,624,915	-		DZA65_RS16795	0.50	-0.3
3,624,915	-		DZA65_RS16795	0.50	-0.7
3,624,915	-		DZA65_RS16795	0.50	+1.5
3,624,915	-		DZA65_RS16795	0.50	-0.5
3,624,915	-		DZA65_RS16795	0.50	-1.3
3,624,915	-		DZA65_RS16795	0.50	+0.1
3,624,939	-		DZA65_RS16795	0.52	-0.6
3,624,939	-		DZA65_RS16795	0.52	-1.1
3,624,939	-		DZA65_RS16795	0.52	-1.3
3,624,998	+		DZA65_RS16795	0.57	-0.1
3,625,157	+		DZA65_RS16795	0.71	+0.4
3,625,157	+		DZA65_RS16795	0.71	+0.9
3,625,157	+		DZA65_RS16795	0.71	-0.5
3,625,157	+		DZA65_RS16795	0.71	+0.1
3,625,157	+				+1.3
3,625,158	-		DZA65_RS16795	0.71	-0.4
3,625,158	-		DZA65_RS16795	0.71	+1.5
3,625,158	-		DZA65_RS16795	0.71	-2.0
3,625,169	+		DZA65_RS16795	0.72	-0.9
3,625,169	+		DZA65_RS16795	0.72	-2.0
3,625,169	+		DZA65_RS16795	0.72	+0.3
3,625,170	-		DZA65_RS16795	0.72	+0.2
3,625,170	-		DZA65_RS16795	0.72	-0.3
3,625,170	-				+0.3
3,625,202	+		DZA65_RS16795	0.75	+0.8
3,625,208	+		DZA65_RS16795	0.75	-1.3
3,625,208	+		DZA65_RS16795	0.75	-0.3
3,625,208	+		DZA65_RS16795	0.75	-0.2
3,625,208	+		DZA65_RS16795	0.75	+2.1
3,625,208	+		DZA65_RS16795	0.75	-2.9
3,625,209	-		DZA65_RS16795	0.75	+2.3
3,625,209	-		DZA65_RS16795	0.75	+0.6
3,625,209	-		DZA65_RS16795	0.75	+0.0
3,625,209	-		DZA65_RS16795	0.75	+1.0
3,625,210	+		DZA65_RS16795	0.75	+1.0
3,625,210	+		DZA65_RS16795	0.75	-0.4
3,625,210	+		DZA65_RS16795	0.75	-2.0
3,625,210	+		DZA65_RS16795	0.75	-0.5
3,625,210	+		DZA65_RS16795	0.75	-2.9
3,625,210	+		DZA65_RS16795	0.75	+0.1
3,625,210	+		DZA65_RS16795	0.75	+0.4
3,625,211	-		DZA65_RS16795	0.75	+0.2
3,625,211	-		DZA65_RS16795	0.75	-2.0
3,625,211	-		DZA65_RS16795	0.75	+0.7
3,625,211	-		DZA65_RS16795	0.75	-2.1
3,625,211	-		DZA65_RS16795	0.75	+1.6
3,625,211	-		DZA65_RS16795	0.75	+0.3
3,625,430	+				-0.9
3,625,430	+				-0.4
3,625,430	+				+1.0
3,625,431	-				+0.7
3,625,431	-				+1.9
3,625,431	-				-0.5
3,625,431	-				-0.9
3,625,462	+				-1.4
3,625,463	-				+0.7
3,625,474	+				-0.0
3,625,474	+				-0.1
3,625,474	+				+1.1
3,625,475	-				+1.2
3,625,475	-				+0.1
3,625,499	+				-1.3
3,625,499	+				+1.6
3,625,500	-				-0.7
3,625,500	-				+0.7
3,625,603	-				-0.7
3,625,674	-				+1.9
3,625,710	+				+0.6
3,625,722	+				-1.2
3,625,722	+				+0.4
3,625,722	+				+0.5
3,625,722	+				-0.5
3,625,722	+				+0.7
3,625,722	+				-0.6
3,625,722	+				+0.3
3,625,722	+				+0.2
3,625,722	+				-0.9
3,625,722	+				-1.0
3,625,722	+				+0.4
3,625,722	+				+0.0
3,625,722	+				-0.4
3,625,723	-				-0.4
3,625,723	-				+1.5
3,625,723	-				+0.3
3,625,723	-				-0.1
3,625,723	-				-0.5
3,625,723	-				-0.1
3,625,723	-				+1.2
3,625,723	-				+0.9
3,625,723	-				+0.3
3,625,723	-				-0.1
3,625,723	-				-0.3
3,625,723	-				+1.5
3,625,723	-				+1.1
3,625,723	-				-1.6
3,625,723	-				-0.2
3,625,723	-				-0.1
3,625,725	+				+0.5
3,625,750	+		DZA65_RS16800	0.10	+0.5
3,625,778	+		DZA65_RS16800	0.12	+0.1
3,625,778	+		DZA65_RS16800	0.12	-1.9
3,625,778	+		DZA65_RS16800	0.12	-0.1
3,625,779	-		DZA65_RS16800	0.12	-0.7
3,625,779	-		DZA65_RS16800	0.12	-2.3
3,625,779	-		DZA65_RS16800	0.12	+0.2
3,625,779	-		DZA65_RS16800	0.12	+0.1
3,625,815	-		DZA65_RS16800	0.14	-1.2
3,625,815	-		DZA65_RS16800	0.14	-1.3
3,625,840	+		DZA65_RS16800	0.16	+0.3
3,625,961	+		DZA65_RS16800	0.23	+0.7
3,625,961	+		DZA65_RS16800	0.23	+0.9
3,625,962	-		DZA65_RS16800	0.23	+0.9
3,625,986	+		DZA65_RS16800	0.25	-0.8
3,625,986	+		DZA65_RS16800	0.25	+0.3
3,625,989	+		DZA65_RS16800	0.25	-0.9
3,626,041	+		DZA65_RS16800	0.28	-0.1
3,626,041	+		DZA65_RS16800	0.28	-0.4
3,626,041	+		DZA65_RS16800	0.28	-2.0
3,626,041	+		DZA65_RS16800	0.28	-0.0
3,626,041	+		DZA65_RS16800	0.28	+2.0
3,626,041	+		DZA65_RS16800	0.28	-2.5
3,626,042	-		DZA65_RS16800	0.28	-2.7
3,626,042	-		DZA65_RS16800	0.28	-0.0
3,626,042	-		DZA65_RS16800	0.28	-1.9
3,626,042	-		DZA65_RS16800	0.28	+0.2
3,626,042	-		DZA65_RS16800	0.28	-0.1
3,626,043	+		DZA65_RS16800	0.28	-1.3
3,626,043	+				+1.9
3,626,043	+		DZA65_RS16800	0.28	+0.3
3,626,043	+		DZA65_RS16800	0.28	+0.3
3,626,043	+		DZA65_RS16800	0.28	-0.0
3,626,044	-		DZA65_RS16800	0.28	+0.4
3,626,044	-		DZA65_RS16800	0.28	+0.1
3,626,044	-		DZA65_RS16800	0.28	-0.1
3,626,044	-		DZA65_RS16800	0.28	-2.0
3,626,044	-		DZA65_RS16800	0.28	+0.4
3,626,257	+		DZA65_RS16800	0.41	-0.4
3,626,257	+		DZA65_RS16800	0.41	-1.0
3,626,258	-		DZA65_RS16800	0.41	-0.1
3,626,258	-		DZA65_RS16800	0.41	+0.2
3,626,258	-		DZA65_RS16800	0.41	-0.1
3,626,258	-		DZA65_RS16800	0.41	-1.1
3,626,286	+		DZA65_RS16800	0.43	-0.7
3,626,287	-		DZA65_RS16800	0.43	+1.7
3,626,345	-		DZA65_RS16800	0.46	+0.3
3,626,345	-		DZA65_RS16800	0.46	+1.0
3,626,443	+		DZA65_RS16800	0.52	+0.4
3,626,443	+		DZA65_RS16800	0.52	-1.0
3,626,443	+		DZA65_RS16800	0.52	+1.1
3,626,443	+		DZA65_RS16800	0.52	-0.7
3,626,443	+		DZA65_RS16800	0.52	-1.7
3,626,444	-		DZA65_RS16800	0.52	-1.1
3,626,444	-		DZA65_RS16800	0.52	-0.7
3,626,444	-		DZA65_RS16800	0.52	-0.5