Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16225

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,518,941	+		DZA65_RS16220	0.23	+0.2
3,518,941	+		DZA65_RS16220	0.23	-0.9
3,518,941	+		DZA65_RS16220	0.23	+0.9
3,518,942	-		DZA65_RS16220	0.23	+0.3
3,518,942	-		DZA65_RS16220	0.23	+2.3
3,518,947	+		DZA65_RS16220	0.23	-3.4
3,518,947	+		DZA65_RS16220	0.23	+0.6
3,518,947	+		DZA65_RS16220	0.23	+1.3
3,518,947	+		DZA65_RS16220	0.23	-0.0
3,518,947	+		DZA65_RS16220	0.23	-0.0
3,518,947	+		DZA65_RS16220	0.23	-0.5
3,518,947	+		DZA65_RS16220	0.23	+0.1
3,518,947	+		DZA65_RS16220	0.23	+1.0
3,518,947	+		DZA65_RS16220	0.23	-1.3
3,518,948	-		DZA65_RS16220	0.23	-0.1
3,518,948	-		DZA65_RS16220	0.23	-0.3
3,518,948	-		DZA65_RS16220	0.23	-0.1
3,518,948	-		DZA65_RS16220	0.23	-1.3
3,519,121	-		DZA65_RS16220	0.38	-0.7
3,519,152	+		DZA65_RS16220	0.41	+0.3
3,519,164	+		DZA65_RS16220	0.42	+1.6
3,519,164	+		DZA65_RS16220	0.42	+0.3
3,519,164	+		DZA65_RS16220	0.42	-0.2
3,519,165	-		DZA65_RS16220	0.42	-1.0
3,519,165	-		DZA65_RS16220	0.42	+0.5
3,519,166	+		DZA65_RS16220	0.42	+1.4
3,519,166	+		DZA65_RS16220	0.42	+0.0
3,519,167	-		DZA65_RS16220	0.42	+0.6
3,519,167	-		DZA65_RS16220	0.42	+0.9
3,519,167	-		DZA65_RS16220	0.42	-1.1
3,519,167	-		DZA65_RS16220	0.42	+1.0
3,519,167	-		DZA65_RS16220	0.42	+0.4
3,519,167	-		DZA65_RS16220	0.42	+0.3
3,519,167	-		DZA65_RS16220	0.42	-1.0
3,519,365	+		DZA65_RS16220	0.59	-0.5
3,519,366	-		DZA65_RS16220	0.59	+0.4
3,519,366	-		DZA65_RS16220	0.59	+1.9
3,519,366	-		DZA65_RS16220	0.59	+0.0
3,519,576	+		DZA65_RS16220	0.78	+0.3
3,519,576	+		DZA65_RS16220	0.78	-1.1
3,519,576	+		DZA65_RS16220	0.78	+0.0
3,519,576	+		DZA65_RS16220	0.78	-2.0
3,519,576	+		DZA65_RS16220	0.78	+0.3
3,519,577	-		DZA65_RS16220	0.78	-0.1
3,519,668	-		DZA65_RS16220	0.86	-1.3
3,519,689	+		DZA65_RS16220	0.88	-0.0
3,519,689	+				+1.0
3,519,689	+		DZA65_RS16220	0.88	+0.5
3,519,689	+		DZA65_RS16220	0.88	-0.8
3,519,689	+		DZA65_RS16220	0.88	+0.3
3,519,689	+		DZA65_RS16220	0.88	-0.3
3,519,690	-		DZA65_RS16220	0.88	+2.7
3,519,692	-		DZA65_RS16220	0.88	+1.9
3,519,692	-		DZA65_RS16220	0.88	+0.1
3,519,692	-		DZA65_RS16220	0.88	-0.6
3,519,695	+		DZA65_RS16220	0.88	-1.3
3,519,696	-		DZA65_RS16220	0.88	+2.7
3,519,696	-		DZA65_RS16220	0.88	+0.4
3,519,696	-		DZA65_RS16220	0.88	-1.2
3,519,766	+				-1.3
3,519,766	+				+0.6
3,519,766	+				-1.3
3,519,766	+				-2.0
3,519,767	-				+0.1
3,519,767	-				-0.2
3,519,830	+				+0.8
3,519,830	+				+0.3
3,519,830	+				+0.1
3,519,830	+				+0.0
3,519,830	+				-0.9
3,519,830	+				-0.2
3,519,831	-				-0.0
3,519,831	-				-1.7
3,519,842	-				-0.2
3,519,842	-				-0.5
3,519,842	-				-0.9
3,519,895	+				-0.9
3,519,936	+				-1.9
3,519,936	+				+0.3
3,519,936	+				-1.5
3,519,936	+				-0.0
3,519,937	-				-1.5
3,519,937	-				+2.5
3,519,937	-				-2.7
3,519,937	-				-2.2
3,519,937	-				-1.9
3,520,041	-		DZA65_RS16225	0.11	-0.5
3,520,066	+		DZA65_RS16225	0.13	+0.3
3,520,067	-		DZA65_RS16225	0.13	+0.9
3,520,074	+		DZA65_RS16225	0.14	-2.3
3,520,075	-		DZA65_RS16225	0.14	-0.5
3,520,075	-		DZA65_RS16225	0.14	-0.5
3,520,079	+		DZA65_RS16225	0.14	-0.3
3,520,113	+		DZA65_RS16225	0.18	+0.3
3,520,113	+		DZA65_RS16225	0.18	-2.3
3,520,113	+		DZA65_RS16225	0.18	+1.3
3,520,114	-		DZA65_RS16225	0.18	+1.6
3,520,114	-		DZA65_RS16225	0.18	-0.7
3,520,166	+		DZA65_RS16225	0.23	+0.9
3,520,166	+		DZA65_RS16225	0.23	+0.9
3,520,166	+		DZA65_RS16225	0.23	-0.5
3,520,166	+		DZA65_RS16225	0.23	-2.0
3,520,167	-		DZA65_RS16225	0.23	+0.1
3,520,167	-		DZA65_RS16225	0.23	-1.3
3,520,167	-		DZA65_RS16225	0.23	-0.4
3,520,167	-		DZA65_RS16225	0.23	-2.6
3,520,214	+		DZA65_RS16225	0.28	-0.5
3,520,214	+		DZA65_RS16225	0.28	-1.1
3,520,215	-		DZA65_RS16225	0.28	-1.3
3,520,215	-		DZA65_RS16225	0.28	-0.1
3,520,218	+		DZA65_RS16225	0.29	-1.9
3,520,218	+		DZA65_RS16225	0.29	-1.3
3,520,218	+		DZA65_RS16225	0.29	+0.0
3,520,218	+		DZA65_RS16225	0.29	-0.2
3,520,219	-		DZA65_RS16225	0.29	-0.8
3,520,219	-		DZA65_RS16225	0.29	-1.7
3,520,263	-		DZA65_RS16225	0.33	-1.5
3,520,293	+		DZA65_RS16225	0.36	-2.0
3,520,294	-		DZA65_RS16225	0.36	-3.5
3,520,294	-		DZA65_RS16225	0.36	-3.2
3,520,294	-		DZA65_RS16225	0.36	-1.0
3,520,296	+		DZA65_RS16225	0.37	-1.3
3,520,296	+		DZA65_RS16225	0.37	-0.5
3,520,297	-		DZA65_RS16225	0.37	-1.5
3,520,334	+		DZA65_RS16225	0.40	-3.3
3,520,334	+		DZA65_RS16225	0.40	-1.6
3,520,334	+		DZA65_RS16225	0.40	-1.3
3,520,334	+		DZA65_RS16225	0.40	+0.0
3,520,334	+		DZA65_RS16225	0.40	-0.9
3,520,334	+		DZA65_RS16225	0.40	-1.6
3,520,335	-		DZA65_RS16225	0.41	+0.3
3,520,337	+		DZA65_RS16225	0.41	-3.3
3,520,337	+		DZA65_RS16225	0.41	-2.2
3,520,337	+		DZA65_RS16225	0.41	-0.6
3,520,338	-		DZA65_RS16225	0.41	-1.7
3,520,338	-		DZA65_RS16225	0.41	+0.9
3,520,338	-		DZA65_RS16225	0.41	-2.5
3,520,338	-		DZA65_RS16225	0.41	-1.3
3,520,492	+		DZA65_RS16225	0.57	-1.5
3,520,493	-		DZA65_RS16225	0.57	-2.9
3,520,493	-		DZA65_RS16225	0.57	-0.9
3,520,494	+		DZA65_RS16225	0.57	-0.4
3,520,494	+		DZA65_RS16225	0.57	-2.0
3,520,494	+		DZA65_RS16225	0.57	-0.7
3,520,494	+		DZA65_RS16225	0.57	-3.3
3,520,494	+		DZA65_RS16225	0.57	-1.5
3,520,494	+		DZA65_RS16225	0.57	-2.3
3,520,494	+		DZA65_RS16225	0.57	-1.0
3,520,495	-		DZA65_RS16225	0.57	-1.3
3,520,495	-		DZA65_RS16225	0.57	-0.7
3,520,495	-		DZA65_RS16225	0.57	-4.2
3,520,495	-		DZA65_RS16225	0.57	+0.3
3,520,498	+		DZA65_RS16225	0.57	-1.0
3,520,499	-		DZA65_RS16225	0.57	-1.3
3,520,499	-		DZA65_RS16225	0.57	+0.3
3,520,499	-		DZA65_RS16225	0.57	-1.6
3,520,556	-		DZA65_RS16225	0.63	-2.3
3,520,570	+		DZA65_RS16225	0.65	-1.2
3,520,570	+		DZA65_RS16225	0.65	-0.9
3,520,570	+		DZA65_RS16225	0.65	-1.7
3,520,571	-		DZA65_RS16225	0.65	-1.9
3,520,589	-		DZA65_RS16225	0.66	-2.3
3,520,685	+		DZA65_RS16225	0.76	-1.3
3,520,685	+		DZA65_RS16225	0.76	-1.2
3,520,710	-		DZA65_RS16225	0.79	-0.9
3,520,710	-		DZA65_RS16225	0.79	-1.6
3,520,757	+		DZA65_RS16225	0.84	-0.7
3,520,757	+		DZA65_RS16225	0.84	-2.6
3,520,762	+		DZA65_RS16225	0.84	-0.7
3,520,762	+		DZA65_RS16225	0.84	-2.2
3,520,762	+		DZA65_RS16225	0.84	+1.3
3,520,762	+		DZA65_RS16225	0.84	-1.3
3,520,762	+		DZA65_RS16225	0.84	-1.5
3,520,762	+		DZA65_RS16225	0.84	-1.5
3,520,763	-		DZA65_RS16225	0.84	-0.9
3,520,763	-		DZA65_RS16225	0.84	-3.3
3,520,763	-		DZA65_RS16225	0.84	-0.7
3,520,763	-		DZA65_RS16225	0.84	-1.3
3,520,763	-		DZA65_RS16225	0.84	+0.3
3,520,763	-		DZA65_RS16225	0.84	-1.7
3,520,763	-		DZA65_RS16225	0.84	-0.8
3,520,763	-		DZA65_RS16225	0.84	+0.5
3,520,764	+		DZA65_RS16225	0.84	-1.0
3,520,764	+		DZA65_RS16225	0.84	-1.1
3,520,765	-		DZA65_RS16225	0.84	-4.2
3,520,765	-		DZA65_RS16225	0.84	-2.3
3,520,765	-		DZA65_RS16225	0.84	-1.3
3,520,765	-		DZA65_RS16225	0.84	-1.7
3,520,765	-		DZA65_RS16225	0.84	-1.8
3,520,767	+		DZA65_RS16225	0.85	-2.5
3,520,767	+		DZA65_RS16225	0.85	-2.4
3,520,768	-		DZA65_RS16225	0.85	-0.3
3,520,768	-		DZA65_RS16225	0.85	-0.7
3,520,781	+		DZA65_RS16225	0.86	-2.2
3,520,781	+		DZA65_RS16225	0.86	-0.1
3,520,782	-		DZA65_RS16225	0.86	-0.9
3,520,782	-		DZA65_RS16225	0.86	-1.3
3,520,782	-		DZA65_RS16225	0.86	-0.1
3,520,896	+				-0.8
3,520,921	-				+0.6
3,520,932	+				+2.3
3,520,932	+				+0.7
3,520,932	+				+1.3
3,520,932	+				-0.2
3,520,932	+				+0.1
3,520,932	+				+0.1
3,520,932	+				+0.2
3,520,932	+				+0.3
3,520,932	+				+0.3
3,520,933	-				+0.7
3,520,933	-				-0.5
3,520,933	-				-0.0
3,520,933	-				+1.7
3,520,933	-				+1.1
3,520,933	-				-0.2
3,520,933	-				-0.4
3,520,933	-				-0.7
3,520,962	-				-0.1
3,520,966	+				+0.2
3,520,976	-				+1.1
3,520,985	-				+0.1
3,521,002	+				-0.5
3,521,002	+				+0.9
3,521,003	-				-1.5
3,521,003	-				-0.0
3,521,003	-				+0.3
3,521,003	-				-1.3
3,521,003	-				-2.0
3,521,086	-				-1.3
3,521,088	+				-0.5
3,521,088	+				-0.5
3,521,088	+				-0.9
3,521,088	+				-1.5
3,521,089	-				+0.0
3,521,089	-				-0.2
3,521,094	-				-1.3
3,521,124	+				+1.1
3,521,125	-				-0.4
3,521,125	-				-1.7
3,521,161	+		DZA65_RS16230	0.14	+0.7
3,521,162	-		DZA65_RS16230	0.14	-0.1
3,521,182	-		DZA65_RS16230	0.16	+1.3
3,521,182	-		DZA65_RS16230	0.16	+1.5
3,521,271	+		DZA65_RS16230	0.27	-0.0
3,521,272	-		DZA65_RS16230	0.27	+1.9
3,521,272	-		DZA65_RS16230	0.27	+1.3
3,521,325	+		DZA65_RS16230	0.33	-0.4
3,521,383	-		DZA65_RS16230	0.40	+0.5
3,521,388	+		DZA65_RS16230	0.41	-0.7
3,521,388	+		DZA65_RS16230	0.41	-1.3
3,521,388	+		DZA65_RS16230	0.41	-0.3
3,521,390	+		DZA65_RS16230	0.41	-0.1
3,521,390	+		DZA65_RS16230	0.41	-0.3
3,521,420	+		DZA65_RS16230	0.44	+0.1
3,521,451	-		DZA65_RS16230	0.48	+0.6
3,521,463	+		DZA65_RS16230	0.49	+1.0
3,521,638	-		DZA65_RS16230	0.70	-1.3
3,521,638	-		DZA65_RS16230	0.70	-2.5
3,521,639	+		DZA65_RS16230	0.70	-0.7
3,521,639	+		DZA65_RS16230	0.70	-0.0
3,521,640	-		DZA65_RS16230	0.70	-1.3
3,521,640	-		DZA65_RS16230	0.70	-0.4
3,521,640	-		DZA65_RS16230	0.70	+0.7
3,521,679	+		DZA65_RS16230	0.75	-0.2
3,521,679	+		DZA65_RS16230	0.75	+1.5
3,521,679	+		DZA65_RS16230	0.75	-0.9
3,521,680	-		DZA65_RS16230	0.75	+1.3
3,521,680	-		DZA65_RS16230	0.75	+1.6
3,521,707	-		DZA65_RS16230	0.78	-1.5
3,521,719	-		DZA65_RS16230	0.79	-1.5
3,521,757	+		DZA65_RS16230	0.84	-1.6
3,521,758	-		DZA65_RS16230	0.84	-1.3
3,521,758	-		DZA65_RS16230	0.84	-0.8
3,521,766	+		DZA65_RS16230	0.85	-0.3
3,521,766	+		DZA65_RS16230	0.85	+0.0
3,521,766	+		DZA65_RS16230	0.85	+0.4
3,521,767	-		DZA65_RS16230	0.85	+0.3
3,521,768	+		DZA65_RS16230	0.85	-1.3
3,521,768	+		DZA65_RS16230	0.85	-0.2
3,521,768	+		DZA65_RS16230	0.85	-1.5
3,521,768	+		DZA65_RS16230	0.85	-1.0
3,521,768	+		DZA65_RS16230	0.85	-0.5
3,521,768	+		DZA65_RS16230	0.85	+0.5
3,521,769	-		DZA65_RS16230	0.85	+1.0
3,521,769	-		DZA65_RS16230	0.85	-2.7
3,521,790	+		DZA65_RS16230	0.88	+0.7
3,521,859	+				-2.7
3,521,860	-				+0.3
3,521,860	-				-2.2
3,521,860	-				-0.3
3,521,863	+				+0.5
3,521,891	+				-0.7
3,521,891	+				-2.5
3,521,891	+				-0.8
3,521,891	+				-0.5
3,521,892	-				-0.5
3,521,892	-				-1.7
3,521,895	+				+1.9
3,521,895	+				-0.6
3,521,895	+				-0.9
3,521,895	+				+1.5
3,521,895	+				-0.1
3,521,896	-				-2.5
3,521,896	-				-0.7
3,521,896	-				-0.8
3,521,896	-				+0.0
3,521,909	+				-0.1