Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16045

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,478,227	-		DZA65_RS16040	0.65	+1.1
3,478,294	+		DZA65_RS16040	0.69	+0.7
3,478,294	+		DZA65_RS16040	0.69	+0.5
3,478,295	-		DZA65_RS16040	0.69	-0.2
3,478,296	+		DZA65_RS16040	0.69	+2.5
3,478,296	+		DZA65_RS16040	0.69	+1.3
3,478,296	+		DZA65_RS16040	0.69	-0.6
3,478,296	+		DZA65_RS16040	0.69	+1.0
3,478,296	+		DZA65_RS16040	0.69	+0.9
3,478,297	-		DZA65_RS16040	0.69	+1.9
3,478,297	-		DZA65_RS16040	0.69	+1.4
3,478,297	-		DZA65_RS16040	0.69	-0.7
3,478,297	-		DZA65_RS16040	0.69	-0.9
3,478,297	-		DZA65_RS16040	0.69	-1.0
3,478,392	+		DZA65_RS16040	0.73	+0.9
3,478,393	-		DZA65_RS16040	0.73	+0.1
3,478,393	-		DZA65_RS16040	0.73	+0.2
3,478,839	+				+1.7
3,478,839	+				+0.2
3,478,839	+				+0.4
3,478,839	+				-0.3
3,478,839	+				-0.7
3,478,839	+				+1.9
3,478,839	+				+1.2
3,478,839	+				-0.7
3,478,839	+				-0.9
3,478,839	+				+0.1
3,478,839	+				+0.9
3,478,839	+				+0.3
3,478,840	-				-0.3
3,478,840	-				+0.0
3,478,840	-				+1.0
3,478,840	-				+0.1
3,478,840	-				-2.9
3,478,840	-				-0.1
3,478,840	-				+1.1
3,478,840	-				-0.5
3,478,840	-				+1.7
3,478,840	-				+0.0
3,478,840	-				-0.7
3,478,840	-				+1.3
3,478,840	-				-0.7
3,478,840	-				+1.3
3,478,952	+				+0.3
3,478,952	+				+0.9
3,478,952	+				+0.9
3,478,953	-				-0.9
3,478,953	-				-1.7
3,479,065	+				+0.2
3,479,065	+				-0.3
3,479,065	+				+0.1
3,479,065	+				-1.3
3,479,065	+				-0.1
3,479,065	+				-0.1
3,479,065	+				-2.3
3,479,065	+				+0.8
3,479,065	+				+0.5
3,479,065	+				+0.3
3,479,065	+				-0.3
3,479,065	+				+0.6
3,479,065	+				+1.2
3,479,065	+				-0.9
3,479,065	+				-2.0
3,479,065	+				+1.5
3,479,065	+				+0.5
3,479,065	+				+1.5
3,479,065	+				+0.3
3,479,065	+				-0.1
3,479,065	+				-0.3
3,479,065	+				+0.1
3,479,065	+				+0.4
3,479,065	+				-0.5
3,479,065	+				-1.3
3,479,065	+				+1.3
3,479,065	+				+0.3
3,479,065	+				+0.6
3,479,065	+				-0.2
3,479,065	+				+1.0
3,479,065	+				+0.2
3,479,065	+				-0.6
3,479,065	+				+1.1
3,479,065	+				+1.0
3,479,065	+				-0.3
3,479,065	+				+0.3
3,479,066	-				-2.0
3,479,066	-				-0.0
3,479,066	-				+0.7
3,479,066	-				+0.8
3,479,066	-				-1.5
3,479,066	-				+0.0
3,479,066	-				+0.5
3,479,066	-				-0.1
3,479,066	-				-0.9
3,479,066	-				-0.7
3,479,066	-				+0.0
3,479,066	-				+0.1
3,479,066	-				-1.1
3,479,066	-				+0.8
3,479,066	-				-0.1
3,479,066	-				+0.1
3,479,066	-				+0.3
3,479,066	-				-0.4
3,479,066	-				+0.9
3,479,066	-				-0.7
3,479,066	-				+0.6
3,479,066	-				+0.6
3,479,066	-				-0.1
3,479,066	-				-1.1
3,479,066	-				-0.4
3,479,066	-				+0.3
3,479,066	-				-1.5
3,479,066	-				+0.3
3,479,066	-				-1.5
3,479,066	-				-0.3
3,479,077	-				+1.6
3,479,084	+				+2.1
3,479,085	-				+0.7
3,479,085	-				+0.7
3,479,087	+				+1.3
3,479,088	-				-0.7
3,479,098	+				-0.9
3,479,098	+				-1.0
3,479,099	-				-0.7
3,479,122	+				-0.1
3,479,122	+				+1.5
3,479,123	-				-0.6
3,479,150	+				-2.0
3,479,150	+				-0.4
3,479,150	+				+0.8
3,479,151	-				-1.0
3,479,151	-				+0.5
3,479,151	-				+0.1
3,479,151	-				-0.1
3,479,151	-				-0.3
3,479,151	-				-0.1
3,479,151	-				+1.7
3,479,151	-				-1.2
3,479,151	-				-0.3
3,479,151	-				+0.3
3,479,151	-				+0.9
3,479,154	+				+0.5
3,479,155	-				-1.3
3,479,155	-				+1.0
3,479,155	-				-2.9
3,479,155	-				-1.3
3,479,155	-				+0.1
3,479,155	-				-0.3
3,479,157	+				-0.3
3,479,157	+				-1.6
3,479,158	-				-0.9
3,479,158	-				-1.7
3,479,158	-				+0.3
3,479,158	-				-1.8
3,479,158	-				+0.5
3,479,158	-				+0.1
3,479,158	-				-0.1
3,479,161	+				+0.9
3,479,161	+				+0.1
3,479,161	+				+0.7
3,479,161	+				+0.5
3,479,162	-				-0.3
3,479,162	-				-0.2
3,479,162	-				-0.7
3,479,162	-				-1.5
3,479,162	-				+1.1
3,479,167	+				-0.9
3,479,167	+				+0.9
3,479,167	+				-0.8
3,479,167	+				+0.3
3,479,167	+				+0.3
3,479,167	+				+0.2
3,479,167	+				+0.2
3,479,167	+				+0.3
3,479,168	-				-1.3
3,479,177	+				-0.6
3,479,177	+				+0.3
3,479,178	-				-0.1
3,479,178	-				-1.3
3,479,179	-				-2.9
3,479,183	-				-0.6
3,479,213	+				-0.5
3,479,213	+				-2.0
3,479,213	+				-2.3
3,479,217	+				-1.3
3,479,318	+				-0.1
3,479,318	+				+0.3
3,479,477	+		DZA65_RS16045	0.14	-3.4
3,479,478	-		DZA65_RS16045	0.14	-2.0
3,479,478	-		DZA65_RS16045	0.14	-0.9
3,479,616	+		DZA65_RS16045	0.20	+1.0
3,479,654	+		DZA65_RS16045	0.22	-2.5
3,479,654	+		DZA65_RS16045	0.22	-2.0
3,479,654	+		DZA65_RS16045	0.22	-0.7
3,479,654	+		DZA65_RS16045	0.22	-1.7
3,479,654	+		DZA65_RS16045	0.22	-0.0
3,479,654	+		DZA65_RS16045	0.22	-1.7
3,479,655	-		DZA65_RS16045	0.22	-0.6
3,479,660	+		DZA65_RS16045	0.22	-1.7
3,479,660	+		DZA65_RS16045	0.22	+0.6
3,479,797	+		DZA65_RS16045	0.29	-0.5
3,479,861	+		DZA65_RS16045	0.32	+0.3
3,479,862	-		DZA65_RS16045	0.32	-0.7
3,480,048	-		DZA65_RS16045	0.41	-2.9
3,480,210	+		DZA65_RS16045	0.49	+0.6
3,480,210	+		DZA65_RS16045	0.49	-1.3
3,480,218	+		DZA65_RS16045	0.49	-3.6
3,480,219	-		DZA65_RS16045	0.49	-0.9
3,480,247	-		DZA65_RS16045	0.51	-0.2
3,480,247	-		DZA65_RS16045	0.51	-3.7
3,480,308	+		DZA65_RS16045	0.54	-3.5
3,480,309	-		DZA65_RS16045	0.54	-0.5
3,480,837	-		DZA65_RS16045	0.79	-1.7
3,480,925	+		DZA65_RS16045	0.84	-0.3
3,481,220	+				-1.7
3,481,220	+				-1.7
3,481,220	+				-0.9
3,481,220	+				-2.3
3,481,220	+				-2.7
3,481,220	+				+0.0
3,481,221	-				-1.0
3,481,221	-				+0.4
3,481,221	-				+0.6
3,481,221	-				+0.5
3,481,221	-				-0.5
3,481,221	-				-1.0
3,481,221	-				-0.9
3,481,222	-				-1.3
3,481,226	+				-1.3
3,481,228	+				-1.3
3,481,229	-				-0.7
3,481,229	-				-1.7
3,481,283	+				-2.0
3,481,283	+				+1.0
3,481,348	+				+0.9
3,481,349	-				+0.3
3,481,535	+		DZA65_RS16050	0.17	+0.2
3,481,535	+		DZA65_RS16050	0.17	-3.3
3,481,536	-		DZA65_RS16050	0.17	+0.3
3,481,595	+		DZA65_RS16050	0.21	+0.1
3,481,595	+		DZA65_RS16050	0.21	-1.2
3,481,596	-		DZA65_RS16050	0.21	-0.6
3,481,596	-		DZA65_RS16050	0.21	+0.1
3,481,596	-		DZA65_RS16050	0.21	-0.5
3,481,686	-		DZA65_RS16050	0.27	-0.3
3,481,885	-		DZA65_RS16050	0.40	-0.1
3,481,885	-		DZA65_RS16050	0.40	-0.1
3,481,889	+		DZA65_RS16050	0.41	-1.0
3,481,889	+		DZA65_RS16050	0.41	-0.5
3,481,889	+		DZA65_RS16050	0.41	+0.6
3,481,890	-		DZA65_RS16050	0.41	-0.7
3,481,890	-		DZA65_RS16050	0.41	+1.0
3,481,890	-		DZA65_RS16050	0.41	+1.0
3,481,890	-		DZA65_RS16050	0.41	+0.4
3,481,890	-		DZA65_RS16050	0.41	-2.2
3,481,893	+		DZA65_RS16050	0.41	-0.7
3,481,893	+		DZA65_RS16050	0.41	-0.9
3,481,894	-				-1.3
3,481,894	-		DZA65_RS16050	0.41	-0.3
3,481,905	+		DZA65_RS16050	0.42	+0.7
3,481,905	+		DZA65_RS16050	0.42	-2.5
3,481,906	-		DZA65_RS16050	0.42	+0.3
3,481,906	-		DZA65_RS16050	0.42	-0.2
3,482,081	-		DZA65_RS16050	0.53	+0.3
3,482,105	-		DZA65_RS16050	0.55	-0.3
3,482,105	-		DZA65_RS16050	0.55	-1.4
3,482,248	-		DZA65_RS16050	0.64	-0.6