Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15650

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,399,129	+				+0.9
3,399,244	+		DZA65_RS15645	0.18	-0.5
3,399,253	+		DZA65_RS15645	0.19	+0.1
3,399,253	+		DZA65_RS15645	0.19	+0.5
3,399,253	+		DZA65_RS15645	0.19	+0.9
3,399,254	-		DZA65_RS15645	0.19	-1.3
3,399,368	-		DZA65_RS15645	0.30	-0.7
3,399,411	+		DZA65_RS15645	0.34	-1.3
3,399,411	+		DZA65_RS15645	0.34	-0.6
3,399,411	+		DZA65_RS15645	0.34	-1.1
3,399,411	+		DZA65_RS15645	0.34	+0.0
3,399,411	+		DZA65_RS15645	0.34	+0.5
3,399,411	+		DZA65_RS15645	0.34	+0.9
3,399,411	+		DZA65_RS15645	0.34	+2.3
3,399,411	+		DZA65_RS15645	0.34	-2.2
3,399,412	-		DZA65_RS15645	0.34	-0.7
3,399,412	-		DZA65_RS15645	0.34	+1.4
3,399,412	-		DZA65_RS15645	0.34	+1.5
3,399,412	-		DZA65_RS15645	0.34	+0.9
3,399,412	-		DZA65_RS15645	0.34	-1.2
3,399,419	+		DZA65_RS15645	0.34	-0.2
3,399,420	-		DZA65_RS15645	0.35	-1.0
3,399,420	-		DZA65_RS15645	0.35	-0.6
3,399,481	+		DZA65_RS15645	0.40	-2.5
3,399,482	-		DZA65_RS15645	0.40	-0.7
3,399,482	-		DZA65_RS15645	0.40	-0.9
3,399,482	-		DZA65_RS15645	0.40	+0.7
3,399,482	-		DZA65_RS15645	0.40	+0.1
3,399,482	-				-0.7
3,399,482	-		DZA65_RS15645	0.40	-0.4
3,399,505	+		DZA65_RS15645	0.42	-2.0
3,399,505	+		DZA65_RS15645	0.42	-1.1
3,399,505	+		DZA65_RS15645	0.42	+0.0
3,399,505	+		DZA65_RS15645	0.42	+0.3
3,399,505	+		DZA65_RS15645	0.42	+0.8
3,399,505	+		DZA65_RS15645	0.42	+0.4
3,399,510	+		DZA65_RS15645	0.43	-0.0
3,399,510	+		DZA65_RS15645	0.43	-0.6
3,399,510	+		DZA65_RS15645	0.43	+1.0
3,399,510	+		DZA65_RS15645	0.43	-0.0
3,399,510	+		DZA65_RS15645	0.43	+0.0
3,399,510	+		DZA65_RS15645	0.43	-0.2
3,399,510	+		DZA65_RS15645	0.43	+0.7
3,399,510	+		DZA65_RS15645	0.43	-1.3
3,399,510	+		DZA65_RS15645	0.43	+0.7
3,399,510	+		DZA65_RS15645	0.43	+1.3
3,399,510	+		DZA65_RS15645	0.43	+2.0
3,399,510	+		DZA65_RS15645	0.43	-2.9
3,399,510	+				-0.7
3,399,510	+		DZA65_RS15645	0.43	-0.9
3,399,510	+		DZA65_RS15645	0.43	+0.8
3,399,510	+		DZA65_RS15645	0.43	-0.7
3,399,510	+		DZA65_RS15645	0.43	+0.7
3,399,510	+		DZA65_RS15645	0.43	-0.9
3,399,510	+		DZA65_RS15645	0.43	-2.6
3,399,510	+		DZA65_RS15645	0.43	+0.0
3,399,510	+		DZA65_RS15645	0.43	-0.1
3,399,510	+		DZA65_RS15645	0.43	-1.6
3,399,510	+		DZA65_RS15645	0.43	+0.3
3,399,510	+		DZA65_RS15645	0.43	+0.0
3,399,510	+		DZA65_RS15645	0.43	-1.4
3,399,511	-		DZA65_RS15645	0.43	-0.2
3,399,511	-		DZA65_RS15645	0.43	-1.3
3,399,511	-		DZA65_RS15645	0.43	+0.1
3,399,511	-		DZA65_RS15645	0.43	+1.0
3,399,511	-		DZA65_RS15645	0.43	-0.8
3,399,511	-		DZA65_RS15645	0.43	+0.6
3,399,511	-		DZA65_RS15645	0.43	+0.6
3,399,511	-		DZA65_RS15645	0.43	+0.8
3,399,511	-		DZA65_RS15645	0.43	-0.9
3,399,511	-		DZA65_RS15645	0.43	+0.5
3,399,511	-		DZA65_RS15645	0.43	-0.1
3,399,511	-		DZA65_RS15645	0.43	+0.3
3,399,511	-		DZA65_RS15645	0.43	-2.5
3,399,511	-		DZA65_RS15645	0.43	+0.5
3,399,511	-		DZA65_RS15645	0.43	-0.9
3,399,511	-		DZA65_RS15645	0.43	-1.2
3,399,511	-		DZA65_RS15645	0.43	-0.4
3,399,511	-		DZA65_RS15645	0.43	-0.7
3,399,511	-		DZA65_RS15645	0.43	+1.5
3,399,511	-		DZA65_RS15645	0.43	+0.5
3,399,511	-		DZA65_RS15645	0.43	-0.0
3,399,511	-		DZA65_RS15645	0.43	-1.2
3,399,511	-		DZA65_RS15645	0.43	+1.4
3,399,511	-		DZA65_RS15645	0.43	+0.1
3,399,511	-		DZA65_RS15645	0.43	-0.9
3,399,511	-		DZA65_RS15645	0.43	-0.5
3,399,511	-		DZA65_RS15645	0.43	+2.0
3,399,511	-		DZA65_RS15645	0.43	+0.4
3,399,511	-		DZA65_RS15645	0.43	-0.1
3,399,511	-		DZA65_RS15645	0.43	-0.8
3,399,511	-		DZA65_RS15645	0.43	+0.3
3,399,635	+		DZA65_RS15645	0.54	+0.6
3,399,635	+		DZA65_RS15645	0.54	+0.9
3,399,649	-		DZA65_RS15645	0.56	-0.1
3,399,700	+		DZA65_RS15645	0.60	-0.2
3,399,701	-		DZA65_RS15645	0.61	+0.7
3,399,701	-		DZA65_RS15645	0.61	-0.5
3,399,706	+		DZA65_RS15645	0.61	+0.7
3,399,706	+		DZA65_RS15645	0.61	+0.7
3,399,706	+		DZA65_RS15645	0.61	-0.6
3,399,706	+		DZA65_RS15645	0.61	+0.3
3,399,707	-		DZA65_RS15645	0.61	+0.6
3,399,707	-		DZA65_RS15645	0.61	+0.7
3,399,707	-		DZA65_RS15645	0.61	-1.7
3,399,709	+		DZA65_RS15645	0.61	-1.7
3,399,709	+		DZA65_RS15645	0.61	-1.6
3,399,727	+		DZA65_RS15645	0.63	-2.0
3,399,727	+		DZA65_RS15645	0.63	+0.4
3,399,727	+		DZA65_RS15645	0.63	+1.1
3,399,727	+		DZA65_RS15645	0.63	+0.3
3,399,727	+		DZA65_RS15645	0.63	+0.3
3,399,728	-		DZA65_RS15645	0.63	-0.6
3,399,728	-		DZA65_RS15645	0.63	+0.9
3,399,736	+		DZA65_RS15645	0.64	+1.6
3,399,742	+		DZA65_RS15645	0.64	+0.3
3,399,742	+		DZA65_RS15645	0.64	+0.9
3,399,772	+		DZA65_RS15645	0.67	+0.5
3,399,772	+		DZA65_RS15645	0.67	-0.8
3,399,773	-		DZA65_RS15645	0.67	-1.3
3,399,910	+		DZA65_RS15645	0.80	+1.9
3,399,910	+		DZA65_RS15645	0.80	-0.2
3,399,911	-		DZA65_RS15645	0.80	-0.0
3,399,911	-		DZA65_RS15645	0.80	-0.5
3,399,944	+		DZA65_RS15645	0.83	+0.3
3,399,944	+		DZA65_RS15645	0.83	-2.5
3,399,945	-		DZA65_RS15645	0.83	-1.3
3,399,945	-		DZA65_RS15645	0.83	+0.3
3,399,978	+		DZA65_RS15645	0.86	-0.4
3,400,004	+		DZA65_RS15645	0.89	+0.1
3,400,004	+		DZA65_RS15645	0.89	+0.0
3,400,004	+		DZA65_RS15645	0.89	+2.0
3,400,004	+		DZA65_RS15645	0.89	+2.3
3,400,004	+		DZA65_RS15645	0.89	-0.2
3,400,004	+		DZA65_RS15645	0.89	-0.8
3,400,004	+		DZA65_RS15645	0.89	-0.2
3,400,005	-		DZA65_RS15645	0.89	-0.1
3,400,005	-		DZA65_RS15645	0.89	+0.5
3,400,045	+				-1.7
3,400,045	+				-1.2
3,400,046	-				-0.3
3,400,046	-				+0.0
3,400,046	-				+1.1
3,400,046	-				+1.3
3,400,048	+				-1.9
3,400,048	+				+0.7
3,400,185	+				-0.6
3,400,186	-				-0.5
3,400,186	-				-1.5
3,400,277	+		DZA65_RS15650	0.21	-1.0
3,400,277	+		DZA65_RS15650	0.21	+0.3
3,400,329	+		DZA65_RS15650	0.28	-0.9
3,400,344	+		DZA65_RS15650	0.30	-0.0
3,400,344	+		DZA65_RS15650	0.30	+0.3
3,400,344	+		DZA65_RS15650	0.30	-1.0
3,400,345	-		DZA65_RS15650	0.30	-0.0
3,400,345	-		DZA65_RS15650	0.30	+0.3
3,400,411	+		DZA65_RS15650	0.39	+0.3
3,400,411	+		DZA65_RS15650	0.39	+0.2
3,400,411	+		DZA65_RS15650	0.39	+0.1
3,400,412	-		DZA65_RS15650	0.39	+1.2
3,400,412	-		DZA65_RS15650	0.39	-0.6
3,400,412	-		DZA65_RS15650	0.39	+0.7
3,400,412	-		DZA65_RS15650	0.39	-1.7
3,400,412	-		DZA65_RS15650	0.39	-0.0
3,400,433	-		DZA65_RS15650	0.42	+0.3
3,400,444	+		DZA65_RS15650	0.43	+1.2
3,400,445	-		DZA65_RS15650	0.43	-0.4
3,400,484	+		DZA65_RS15650	0.49	+1.9
3,400,484	+		DZA65_RS15650	0.49	-1.4
3,400,485	-		DZA65_RS15650	0.49	-0.3
3,400,551	+		DZA65_RS15650	0.58	-0.9
3,400,551	+		DZA65_RS15650	0.58	+0.8
3,400,552	-		DZA65_RS15650	0.58	+0.7
3,400,552	-		DZA65_RS15650	0.58	-0.0
3,400,612	+		DZA65_RS15650	0.66	+1.0
3,400,612	+		DZA65_RS15650	0.66	-0.2
3,400,612	+		DZA65_RS15650	0.66	+0.3
3,400,612	+		DZA65_RS15650	0.66	+1.1
3,400,612	+		DZA65_RS15650	0.66	+1.6
3,400,612	+		DZA65_RS15650	0.66	-1.5
3,400,613	-		DZA65_RS15650	0.66	+0.5
3,400,613	-		DZA65_RS15650	0.66	-0.9
3,400,613	-		DZA65_RS15650	0.66	+0.8
3,400,613	-		DZA65_RS15650	0.66	+0.9
3,400,613	-		DZA65_RS15650	0.66	+0.3
3,400,613	-		DZA65_RS15650	0.66	+0.0
3,400,613	-		DZA65_RS15650	0.66	+1.3
3,400,631	+		DZA65_RS15650	0.69	+1.0
3,400,646	+		DZA65_RS15650	0.71	-0.4
3,400,647	-		DZA65_RS15650	0.71	-0.1
3,400,839	+				+0.3
3,400,840	-				-0.6
3,400,903	-		DZA65_RS15655	0.11	-1.0
3,400,950	+		DZA65_RS15655	0.24	+0.3
3,400,950	+		DZA65_RS15655	0.24	-0.1
3,400,951	-		DZA65_RS15655	0.24	+0.0
3,400,992	-		DZA65_RS15655	0.35	+0.5
3,400,992	-		DZA65_RS15655	0.35	+0.1
3,401,021	+		DZA65_RS15655	0.43	+0.5
3,401,022	-		DZA65_RS15655	0.43	-0.5
3,401,022	-		DZA65_RS15655	0.43	+1.2
3,401,242	+				-0.0
3,401,242	+				-0.2
3,401,243	-				-0.1
3,401,280	-				-0.1
3,401,283	-				+0.3
3,401,306	+		DZA65_RS15660	0.12	-0.8
3,401,307	-		DZA65_RS15660	0.12	-1.2
3,401,307	-		DZA65_RS15660	0.12	-0.4
3,401,315	+		DZA65_RS15660	0.14	-0.6
3,401,316	-		DZA65_RS15660	0.14	+0.4
3,401,426	+		DZA65_RS15660	0.34	+0.3
3,401,426	+		DZA65_RS15660	0.34	-0.5
3,401,426	+		DZA65_RS15660	0.34	+1.7
3,401,426	+		DZA65_RS15660	0.34	+0.8
3,401,493	+		DZA65_RS15660	0.47	+1.5
3,401,503	+		DZA65_RS15660	0.49	+0.4
3,401,503	+		DZA65_RS15660	0.49	+3.4
3,401,503	+		DZA65_RS15660	0.49	-2.5
3,401,503	+		DZA65_RS15660	0.49	-1.7
3,401,503	+		DZA65_RS15660	0.49	-1.0
3,401,503	+		DZA65_RS15660	0.49	-0.2
3,401,504	-		DZA65_RS15660	0.49	-0.4
3,401,504	-		DZA65_RS15660	0.49	+0.5
3,401,504	-		DZA65_RS15660	0.49	-0.0
3,401,504	-		DZA65_RS15660	0.49	+0.1
3,401,504	-		DZA65_RS15660	0.49	-0.7
3,401,504	-		DZA65_RS15660	0.49	+2.0
3,401,508	+		DZA65_RS15660	0.49	-0.1
3,401,508	+		DZA65_RS15660	0.49	-0.9
3,401,508	+		DZA65_RS15660	0.49	+0.9
3,401,508	+		DZA65_RS15660	0.49	-1.7
3,401,508	+		DZA65_RS15660	0.49	-1.8
3,401,509	-		DZA65_RS15660	0.50	+1.4
3,401,509	-		DZA65_RS15660	0.50	-1.2
3,401,585	+		DZA65_RS15660	0.64	-0.7
3,401,586	-		DZA65_RS15660	0.64	+0.3
3,401,587	+		DZA65_RS15660	0.64	+0.6
3,401,587	+		DZA65_RS15660	0.64	-0.7
3,401,587	+		DZA65_RS15660	0.64	+0.3
3,401,587	+		DZA65_RS15660	0.64	-0.7
3,401,587	+		DZA65_RS15660	0.64	-1.0
3,401,587	+		DZA65_RS15660	0.64	+0.5
3,401,587	+		DZA65_RS15660	0.64	+0.7
3,401,587	+		DZA65_RS15660	0.64	-1.3
3,401,587	+		DZA65_RS15660	0.64	-0.5
3,401,587	+		DZA65_RS15660	0.64	-1.5
3,401,587	+		DZA65_RS15660	0.64	-0.7
3,401,587	+		DZA65_RS15660	0.64	+0.7
3,401,588	-		DZA65_RS15660	0.64	+0.1
3,401,588	-		DZA65_RS15660	0.64	-0.7
3,401,588	-		DZA65_RS15660	0.64	-0.4
3,401,588	-		DZA65_RS15660	0.64	+0.8
3,401,588	-		DZA65_RS15660	0.64	-1.0
3,401,588	-		DZA65_RS15660	0.64	-1.7
3,401,588	-		DZA65_RS15660	0.64	-2.2
3,401,588	-		DZA65_RS15660	0.64	+0.6
3,401,588	-		DZA65_RS15660	0.64	-0.5
3,401,588	-		DZA65_RS15660	0.64	+1.1
3,401,588	-		DZA65_RS15660	0.64	-0.5
3,401,588	-		DZA65_RS15660	0.64	-1.0
3,401,588	-		DZA65_RS15660	0.64	-0.0
3,401,588	-		DZA65_RS15660	0.64	-0.6
3,401,588	-		DZA65_RS15660	0.64	-1.8
3,401,588	-		DZA65_RS15660	0.64	+0.4
3,401,588	-		DZA65_RS15660	0.64	+1.5
3,401,588	-		DZA65_RS15660	0.64	-0.2
3,401,600	+		DZA65_RS15660	0.66	-0.7
3,401,601	-		DZA65_RS15660	0.67	-1.0
3,401,601	-		DZA65_RS15660	0.67	-2.3
3,401,633	-		DZA65_RS15660	0.73	+1.1
3,401,685	-		DZA65_RS15660	0.82	+1.1
3,401,736	+				+0.8
3,401,762	+				+2.5
3,401,762	+				+1.1
3,401,762	+				+0.7
3,401,762	+				-0.2
3,401,762	+				-1.5
3,401,762	+				+0.1
3,401,762	+				+0.1
3,401,762	+				+0.1
3,401,762	+				+1.1
3,401,763	-				+0.0
3,401,763	-				-2.0
3,401,763	-				-1.5
3,401,763	-				-1.7
3,401,763	-				+0.3
3,401,763	-				+0.1
3,401,763	-				-1.0
3,401,803	+				-0.3
3,401,804	-				-0.5
3,401,806	+				-0.9
3,401,806	+				-0.1
3,401,807	-				+0.4
3,401,842	+		DZA65_RS15665	0.13	-0.1